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Daniel Aguilar-Hidalgo

Publications and source records attributed to Daniel Aguilar-Hidalgo.

3 recordsLinked to original sources

Self-organization drives symmetry-breaking, scaling, and critical growth transitions in stem cell-derived organoids

The emergence of spatial patterns and organized growth is a hallmark of developing tissues. While symmetry-breaking and scaling laws govern these processes, how cells coordinate spatial patterning with size regulation remains unclear. Here, we combine quantitative imaging, a Turing activator-repressor model with self-organized reactive boundaries, and in vitro models of early mouse development to study mesodermal pattern formation in two-dimensional (2D) gastruloids. We show that colony size dictates symmetry: small colonies (radius approximately 100 micrometers) spontaneously break symmetry, while larger ones remain centro-symmetric, consistent with size-dependent positional information and model predictions. The mesodermal domain area scales robustly with colony size following a power law, independent of cell density, indicating that cells sense and respond to gastruloid size. Time-lapse imaging reveals a biphasic growth law: an early power-law expansion followed by exponential arrest, marking a dynamical phase transition. These dynamics, conserved across sizes, reflect features of criticality seen in physical systems, where self-organization, scaling, and boundary feedback converge. Our findings uncover a minimal mechanism for size-dependent pattern formation and growth control. This framework enables quantitative investigation of symmetry-breaking and scaling in self-organizing tissues, offering insights into the physical principles underlying multicellular organization.

q-bio.TO↗

Core regulatory network motif underlies the ocellar complex patterning in Drosophila melanogaster

During organogenesis, developmental programs governed by Gene Regulatory Networks (GRN) define the functionality, size and shape of the different constituents of living organisms. Robustness, thus, is an essential characteristic that GRNs need to fulfill in order to maintain viability and reproducibility in a species. In the present work we analyze the robustness of the patterning for the ocellar complex formation in Drosophila melanogaster fly. We have systematically pruned the GRN that drives the development of this visual system to obtain the minimum pathway able to satisfy this pattern. We found that the mechanism underlying the patterning obeys to the dynamics of a 3-nodes network motif with a double negative feedback loop fed by a morphogenetic gradient that triggers the inhibition in a French flag problem fashion. A Boolean modeling of the GRN confirms robustness in the patterning mechanism showing the same result for different network complexity levels. Interestingly, the network provides a steady state solution in the interocellar part of the patterning and an oscillatory regime in the ocelli. This theoretical result predicts that the ocellar pattern may underlie oscillatory dynamics in its genetic regulation.

q-bio.TO↗

Collective computation in a network with distributed information

We analyze a distributed information network in which each node has access to the information contained in a limited set of nodes (its neighborhood) at a given time. A collective computation is carried out in which each node calculates a value that implies all information contained in the network (in our case, the average value of a variable that can take different values in each network node). The neighborhoods can change dynamically by exchanging neighbors with other nodes. The results of this collective calculation show rapid convergence and good scalability with the network size. These results are compared with those of a fixed network arranged as a square lattice, in which the number of rounds to achieve a given accuracy is very high when the size of the network increases. The results for the evolving networks are interpreted in light of the properties of complex networks and are directly relevant to the diameter and characteristic path length of the networks, which seem to express "small world" properties.

cs.SI↗