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Daniel Baumgarten

Publications and source records attributed to Daniel Baumgarten.

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Scatter-based common spatial patterns -- a unified spatial filtering framework

The common spatial pattern (CSP) approach is known as one of the most popular spatial filtering techniques for EEG classification in motor imagery (MI) based brain-computer interfaces (BCIs). However, it still suffers some drawbacks such as sensitivity to noise, non-stationarity, and limitation to binary classification.Therefore, we propose a novel spatial filtering framework called scaCSP based on the scatter matrices of spatial covariances of EEG signals, which works generally in both binary and multi-class problems whereas CSP can be cast into our framework as a special case when only the range space of the between-class scatter matrix is used in binary cases.We further propose subspace enhanced scaCSP algorithms which easily permit incorporating more discriminative information contained in other range spaces and null spaces of the between-class and within-class scatter matrices in two scenarios: a nullspace components reduction scenario and an additional spatial filter learning scenario.The proposed algorithms are evaluated on two data sets including 4 MI tasks. The classification performance is compared against state-of-the-art competing algorithms: CSP, Tikhonov regularized CSP (TRCSP), stationary CSP (sCSP) and stationary TRCSP (sTRCSP) in the binary problems whilst multi-class extensions of CSP based on pair-wise and one-versus-rest techniques in the multi-class problems. The results show that the proposed framework outperforms all the competing algorithms in terms of average classification accuracy and computational efficiency in both binary and multi-class problems.The proposed scsCSP works as a unified framework for general multi-class problems and is promising for improving the performance of MI-BCIs.

eess.SP

Online functional connectivity analysis of large all-to-all networks

The analysis of EEG/MEG functional connectivity has become an important tool in neural research. Especially the high time resolution of EEG/MEG enables important insight into the functioning of the human brain. To date, functional connectivity is commonly estimated offline, i.e., after the conclusion of the experiment. However, online computation of functional connectivity has the potential to enable unique experimental paradigms. For example, changes of functional connectivity due to learning processes could be tracked in real time and the experiment be adjusted based on these observations. Furthermore, the connectivity estimates can be used for neurofeedback applications or the instantaneous inspection of measurement results. In this study, we present the implementation and evaluation of online sensor and source space functional connectivity estimation in the open-source software MNE Scan. Online capable implementations of several functional connectivity metrics were established in the Connectivity library within MNE-CPP and made available as a plugin in MNE Scan. Online capability was achieved by enforcing multithreading and high efficiency for all computations, so that repeated computations were avoided wherever possible, which allows for a major speed-up in the case of overlapping intervalls. We present comprehensive performance evaluations of these implementations proving the online capability for the computation of large all-to-all functional connectivity networks. As a proof of principle, we demonstrate the feasibility of online functional connectivity estimation in the evaluation of somatosensory evoked brain activity.

eess.SP

The Inverse Problem of Magnetorelaxometry Imaging

The aim of this paper is to provide a solid mathematical discussion of the inverse problem in Magnetorelaxometry Imaging (MRXI), a currently developed technique for quantitative biomedical imaging using magnetic nanoparticles. We provide a detailed discussion of the mathematical modeling of the forward problems including possible ways to activate and measure, leading to a severely ill-posed linear inverse problem. Moreover, we formulate an idealized version of the inverse problem for infinitesimal small activation coils, which allows for a more detailed analysis of uniqueness issues. We propose a variational regularization approach to compute stable approximations of the solution and discuss its discretization and numerical solution. Results on synthetic are presented and improvements to methods used previously in practice are demonstrated. Finally we give an outlook to further questions and in particular experimental design.

math.NA

European research on magnetic nanoparticles for biomedical applications: standardisation aspects

Magnetic nanoparticles have many applications in biomedicine and other technical areas. Despite their huge economic impact, there are no standardised procedures available to measure their basic magnetic properties. The International Organization for Standardization is working on a series of documents on the definition of characteristics of magnetic nanomaterials. We review previous and ongoing European research projects on characteristics of magnetic nanoparticles and present results of an online survey among European researchers.

physics.med-ph

Douglas-Rachford Algorithm for Magnetorelaxometry Imaging using Random and Deterministic Activations

Magnetorelaxometry imaging is a novel tool for quantitative determination of the spatial distribution of magnetic nanoparticle inside an organism. The use of multiple excitation patterns has been demonstrated to significantly improve spatial resolution. However, increasing the number of excitation patterns is considerably more time consuming, because several sequential measurements have to be performed. In this paper, we use compressed sensing in combination with sparse recovery to reduce the total measurement time and to improve spatial resolution. For image reconstruction, we propose using the Douglas-Rachford splitting algorithm applied to the sparse Tikhonov functional including a positivity constraint. Our numerical experiments demonstrate that the resulting algorithm is capable to accurately recover the magnetic nanoparticle distribution from a small number of activation patterns. For example, our algorithm applied with 10 activations yields half the reconstruction error of quadratic Tikhonov regularization applied with 50 activations, for a tumor-like phantom.

math.NA