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Daniel Gonzalez-Alvarado

Publications and source records attributed to Daniel Gonzalez-Alvarado.

5 recordsLinked to original sources

Generative Modeling of Discrete Data Using Geometric Latent Subspaces

We propose a geometric latent-subspace framework for generative modeling of discrete data. Specifically, we introduce latent subspaces in the exponential parameter space of product manifolds of categorical distributions as a novel method for learning generative models of discrete data. The resulting low-dimensional latent space encodes statistical dependencies and removes redundant degrees of freedom among the categorical variables. We equip the parameter domain with a Riemannian geometry such that the latent subspace and induced data manifold are related by isometries enabling consistent flow matching. Exploiting this structure, we propose a geometry-aware dimensionality reduction objective, called geometric PCA (GPCA), which we formulate as a regularized cross-entropy minimization that encourages small Riemannian distances between the data and their reconstructions. In particular, under the induced geometry, geodesics become straight lines in the latent parameter space which makes model training by flow matching effective. Empirical results show that low-dimensional latent representations suffice to accurately model high-dimensional discrete data.

stat.ML↗

Riemannian Patch Assignment Gradient Flows

This paper introduces patch assignment flows for metric data labeling on graphs. Labelings are determined by regularizing initial local labelings through the dynamic interaction of both labels and label assignments across the graph, entirely encoded by a dictionary of competing labeled patches and mediated by patch assignment variables. Maximal consistency of patch assignments is achieved by geometric numerical integration of a Riemannian ascent flow, as critical point of a Lagrangian action functional. Experiments illustrate properties of the approach, including uncertainty quantification of label assignments.

cs.CV↗

Generative Assignment Flows for Representing and Learning Joint Distributions of Discrete Data

We introduce a novel generative model for the representation of joint probability distributions of a possibly large number of discrete random variables. The approach uses measure transport by randomized assignment flows on the statistical submanifold of factorizing distributions, which enables to represent and sample efficiently from any target distribution and to assess the likelihood of unseen data points. The complexity of the target distribution only depends on the parametrization of the affinity function of the dynamical assignment flow system. Our model can be trained in a simulation-free manner by conditional Riemannian flow matching, using the training data encoded as geodesics on the assignment manifold in closed-form, with respect to the e-connection of information geometry. Numerical experiments devoted to distributions of structured image labelings demonstrate the applicability to large-scale problems, which may include discrete distributions in other application areas. Performance measures show that our approach scales better with the increasing number of classes than recent related work.

stat.ML↗

Generative Modeling of Discrete Joint Distributions by E-Geodesic Flow Matching on Assignment Manifolds

This paper introduces a novel generative model for discrete distributions based on continuous normalizing flows on the submanifold of factorizing discrete measures. Integration of the flow gradually assigns categories and avoids issues of discretizing the latent continuous model like rounding, sample truncation etc. General non-factorizing discrete distributions capable of representing complex statistical dependencies of structured discrete data, can be approximated by embedding the submanifold into a the meta-simplex of all joint discrete distributions and data-driven averaging. Efficient training of the generative model is demonstrated by matching the flow of geodesics of factorizing discrete distributions. Various experiments underline the approach's broad applicability.

cs.LG↗

High-resolution computer meshes of the lower body bones of an adult human female derived from CT images

Background Computer-based geometrical meshes of bones are important for applications in computational biomechanics as well as clinical software. There is however a lack of freely available detailed bone meshes, especially related to the human female morphology. Methods & Results We provide high resolution bone meshes of the lower body, derived from CT images of a 59 year old female cadaver that were sourced from the Visible Human Data Set, Visible Human Project (NIH, USA). Important bone landmarks and joint rotation axes are identified from the extracted meshes. A script-based framework is developed to provide a graphical user interface that can visualize, resample and modify the meshes to fit different subject scales. Conclusion This open-data resource fills a gap in available data and is provided for free usage in research and other applications. The associated scripts allows users to easily transform the meshes to different laboratory and software setups. This resource may be accessed through the following web link: https://github.com/manishsreenivasa/BMFToolkit This document is the author's version of this article.

q-bio.TO↗