arXiv subjects

Daniel M. Busiello

Publications and source records attributed to Daniel M. Busiello.

At least 19 recordsLinked to original sources

arXiv2026

Refining Unified Colored-Noise Approximation

Countless biological and physical systems experience fluctuations that exhibit non-trivial temporal correlations. The Unified Colored-Noise Approximation (UCNA) is a framework providing an approximate description of such stochastic dynamics with colored noise, valid in the limits of vanishing and infinite correlation time of the noise. We first pinpoint and address some criticalities in its original derivation, recasting the result through a time-scale separation procedure. By using our approach, we derive the next-to-leading order correction to the dynamics in both limiting regimes, and highlight the relevant physical scalings of these approximations. Our result helps frame the limits of validity of both the original and the refined formulas, especially in comparison with those derived through different approximation procedures. We show our findings in two paradigmatic examples, a quartic potential and a stochastic logistic growth with multiplicative noise.

cond-mat.stat-mech↗

arXiv2026

Universal thermokinetic decomposition of short-time information fluctuations

Biological, artificial, and physical systems dissipate energy to accurately transmit information. While tools of information theory have been used to characterize information-processing capabilities, how reliably this information is acquired along individual trajectories, and which aspects require a thermodynamic cost, is an open question. In this work, we focus on the stochastic predictability of an arbitrary Langevin dynamics, defined as the pointwise mutual information between the current and future states of a system. We show that the fluctuations of predictability obey a universal thermokinetic decomposition at short times, which reveals that information fluctuations are suppressed by energy dissipation and become stronger with increased dynamical activity. Remarkably, we find that the average predictability, i.e., the short-time mutual information, does not carry any dependence on the underlying thermodynamic and kinetic features. Thus, the role of dissipation at short times is not to enhance information, but to reduce its fluctuations. Such dissipative control is effective only when instantiated by nonlinear operations. Moreover, energy consumption governs short- and long-time precision in stochastic oscillators through structurally different mechanisms that can be independently tuned. Our decomposition offers a fundamental thermodynamic basis for understanding the reliability of information transmission in nonequilibrium systems, the constraints on precision in biological systems, and the design of energy-limited control strategies.

cond-mat.stat-mech↗

arXiv2025

Plasticity-induced multistability on fast and slow timescales enables optimal information encoding and spontaneous sequence discrimination

Neural circuits exhibit remarkable computational flexibility, enabling adaptive responses to noisy and ever-changing environmental cues. A fundamental question in neuroscience concerns how a wide range of behaviors can emerge from a relatively limited set of underlying biological mechanisms. In particular, the interaction between activities of neuronal populations and plasticity modulation of synaptic connections may endow neural circuits with a variety of functional responses when coordinated over different characteristic timescales. Here, we develop an information-theoretic framework to quantitatively explore this idea. We consider a stochastic model for neural activities that incorporates the presence of a coupled dynamic plasticity and time-varying stimuli. We show that long-term plasticity modulations play the functional role of steering neural activities towards a regime of optimal information encoding. By constructing the associated phase diagram, we demonstrate that either Hebbian or anti-Hebbian plasticity may become optimal strategies depending on how the external input is projected to the target neural populations. Conversely, short-term plasticity enables the discrimination of temporal ordering in sequences of inputs by navigating the emergent multistable attractor landscape. By allowing a degree of variability in external stimuli, we also highlight the existence of an optimal variability for sequence discrimination at a given plasticity strength. In summary, the timescale of plasticity modulation shapes how inputs are represented in neural activities, thereby fundamentally altering the computational properties of the system. Our approach offers a unifying information-theoretic perspective of the role of plasticity, paving the way for a quantitative understanding of the emergence of complex computations in coupled neuronal-synaptic dynamics.

cond-mat.stat-mech↗

arXiv2025

Stochastic processes with multiple temporal scales: timescale separation and information

Complex systems are often characterized by the interplay of multiple interconnected dynamical processes operating across a range of temporal scales. This phenomenon is widespread in both biological and artificial scenarios, making it crucial to understand how such multiscale dynamics influence the overall functioning and behavior of these systems. Here, we present a general timescale separation approach that is valid for any set of stochastic differential equations coupled across multiple timescales. We show two alternative derivations, one based on an iterative procedure, and the other grounded on an a priori expansion in relevant small parameters associated with faster timescales. We provide an explicit expression for the conditional structure of the joint probability distribution of the whole set of processes that is solely determined by the multiscale interactions. This result has important consequences in determining how information is generated in the system and how it propagates across different timescales. To demonstrate that our findings are valid independently of the specific dynamical model, we test them against four different (linear and non-linear) dynamics. Then, we focus on the scenario in which two degrees of freedom are reciprocally coupled across their timescales. In this case, we show that the statistics of the fastest dynamics is captured by an effective self-interaction term in the slowest one, creating a regulatory loop. Finally, a connection with analogous previous results obtained for discrete-state systems with higher-order interactions is drawn, elucidating similarities and differences in the physical interpretation of the system. The presented framework might open the avenue for a clearer understanding of the interplay between the underlying multiscale structure and emergent functional behavior of biological and artificial systems.

cond-mat.stat-mech↗

arXiv2024

Splitting of nonequilibrium phase transitions in driven Ising models

Spontaneous symmetry breaking occurs in various equilibrium and nonequilibrium systems, where phase transitions are typically marked by a single critical point that separates ordered and disordered regimes. We reveal a novel phenomenon in which the interplay between different temperatures and driving forces splits the order-disorder transition into two distinct transition points depending on which ordered state initially dominates. Crucially, these two emerging phases have distinct scaling behaviors and thermodynamic properties. To study this, we propose a minimal variant of the Ising model where spins are coupled to two thermal baths and subjected to two opposite driving forces associated to them. Our findings, robust both for all-to-all interactions (where exact solutions are possible) and nearest-neighbor couplings on a square lattice, uncover unique nonequilibrium behaviors and scaling laws for crucial thermodynamic quantities, such as efficiency, dissipation, power and its fluctuations, that are different between the two ordered phases. We also highlight that one of these emerging phases enables heat-engine operations that are less dissipative and show reduced fluctuations. In this setup, the system can also operate near maximum power and efficiency over a wide parameter range. Our results offer new insights into the relevance of phase transitions under nonequilibrium conditions.

cond-mat.stat-mech↗

arXiv2024

Multiscale nonlinear integration drives accurate encoding of input information

Biological and artificial systems encode information through several complex nonlinear operations, making their exact study a formidable challenge. These internal mechanisms often take place across multiple timescales and process external signals to enable functional output responses. In this work, we focus on two widely implemented paradigms: nonlinear summation, where signals are first processed independently and then combined; and nonlinear integration, where they are combined first and then processed. We study a general model where the input signal is propagated to an output unit through a processing layer via nonlinear activation functions. Further, we distinguish between the two cases of fast and slow processing timescales. We demonstrate that integration and fast-processing capabilities systematically enhance input-output mutual information over a wide range of parameters and system sizes, while simultaneously enabling tunable input discrimination. Moreover, we reveal that high-dimensional embeddings and low-dimensional projections emerge naturally as optimal competing strategies. Our results uncover the foundational features of nonlinear information processing with profound implications for both biological and artificial systems.

cond-mat.stat-mech↗

arXiv2024

Information interference driven by environmental activity

Real-world systems are shaped by both their complex internal interactions and the changes in their noisy environments. In this work, we study how a shared active bath affects the statistical dependencies between two interacting Brownian particles by evaluating their mutual information. We decompose the mutual information into three terms: information stemming from the internal interactions between the particles; information induced by the shared bath, which encodes environmental changes; a term describing information interference that quantifies how the combined presence of both internal interactions and environment either masks (destructive interference) or boosts (constructive interference) information. By studying exactly the case of linear interactions, we find that the sign of information interference depends solely on that of the internal coupling. However, when internal interactions are described by a nonlinear activation function, we show that both constructive and destructive interference appear depending on the interplay between the timescale of the active environment, the internal interactions, and the environmental coupling. Finally, we show that our results generalize to hierarchical systems where asymmetric couplings to the environment mimic the scenario where the active bath is only partially accessible to one particle. This setting allows us to quantify how this asymmetry drives information interference. Our work underscores how information and functional relationships in complex multi-scale systems are fundamentally shaped by the environmental context.

cond-mat.stat-mech↗

arXiv2024

Phase boundaries promote chemical reactions through localized fluxes

One of the hypothesized functions of biomolecular condensates is to act as chemical reactors, where chemical reactions can be modulated, i.e. accelerated or slowed down, while substrate molecules enter and products exit from the condensate. Likewise, the components themselves that take part in the architectural integrity of condensates might be modified by active (energy consuming, non-equilibrium) processes, e.g. by ATPase chaperones or by kinases and phosphatases. In this work, we study how the presence of spatial inhomogeneities, such as in the case of liquid-liquid phase separation, affects active chemical reactions and results in the presence of directional flows of matter, which are one of the hallmarks of non-equilibirum processes. We establish the minimal conditions for the existence of such spatial currents, and we furthermore find that these fluxes are maximal at the condensate interface. These results propose that some condensates might be most efficient as chemical factories due to their interfaces rather than their volumes, and could suggest a possible biological reason for the the observed abundance of small non-fusing condensates inside the cell, thus maximizing their surface and the associated fluxes.

physics.bio-ph↗

arXiv2022

Information-driven transitions in projections of underdamped dynamics

Low-dimensional representations of underdamped systems often provide insightful grasps and analytical tractability. Here, we build such representations via information projections, obtaining an optimal model that captures the most information on observed spatial trajectories. We show that, in paradigmatic systems, the minimization of the information loss drives the appearance of a discontinuous transition in the optimal model parameters. Our results raise serious warnings for general inference approaches and unravel fundamental properties of effective dynamical representations, impacting several fields, from biophysics to dimensionality reduction.

cond-mat.stat-mech↗

arXiv2020

Tighter thermodynamic bound on speed limit in systems with unidirectional transitions

We consider a general discrete state-space system with both unidirectional and bidirectional links. In contrast to bidirectional links, there is no reverse transition along the unidirectional links. Herein, we first compute the statistical length and the thermodynamic cost function for transitions in the probability space, highlighting contributions from total, environmental, and resetting (unidirectional) entropy production. Then, we derive the thermodynamic bound on the speed limit to connect two distributions separated by a finite time, showing the effect of the presence of unidirectional transitions. Novel uncertainty relationships can be found for the \textit{temporal} first and second moments of the average resetting entropy production. We derive simple expressions in the limit of slow unidirectional transition rates. Finally, we present a refinement of the thermodynamic bound, by means of an optimization procedure. We numerically investigate these results on systems that stochastically reset with constant and periodic resetting rate.

cond-mat.stat-mech↗

arXiv2020

Coarse-grained entropy production with multiple reservoirs: unraveling the role of time-scales and detailed balance in biology-inspired systems

A general framework to describe a vast majority of biology-inspired systems is to model them as stochastic processes in which multiple couplings are in play at the same time. Molecular motors, chemical reaction networks, catalytic enzymes, and particles exchanging heat with different baths, constitute some interesting examples of such a modelization. Moreover, they usually operate out of equilibrium, being characterized by a net production of entropy, which entails a constrained efficiency. Hitherto, in order to investigate multiple processes simultaneously driving a system, all theoretical approaches deal with them independently, at a coarse-grained level, or employing a separation of time-scales. Here, we explicitly take in consideration the interplay among time-scales of different processes, and whether or not their own evolution eventually relaxes toward an equilibrium state in a given sub-space. We propose a general framework for multiple coupling, from which the well-known formulas for the entropy production can be derived, depending on the available information about each single process. Furthermore, when one of the processes does not equilibrate in its sub-space, even if much faster than all the others, it introduces a finite correction to the entropy production. We employ our framework in various simple and pedagogical examples, for which such a corrective term can be related to a typical scaling of physical quantities in play.

cond-mat.stat-mech↗

arXiv2019

Entropy production for coarse-grained dynamics

Systems out of equilibrium exhibit a net production of entropy. We study the dynamics of a stochastic system represented by a Master Equation that can be modeled by a Fokker-Planck equation in a coarse-grained, mesoscopic description. We show that the corresponding coarse-grained entropy production contains information on microscopic currents that are not captured by the Fokker-Planck equation and thus cannot be deduced from it. We study a discrete-state and a continuous-state system, deriving in both the cases an analytical expression for the coarse-graining corrections to the entropy production. This result elucidates the limits in which there is no loss of information in passing from a Master Equation to a Fokker-Planck equation describing the same system. Our results are amenable of experimental verification, which could help to infer some information about the underlying microscopic processes.

cond-mat.stat-mech↗

arXiv2018

Similarities and Differences Between Nonequilibrium Steady States and Time-Periodic Driving in Diffusive Systems

A system that violates detailed balance evolves asymptotically into a nonequilibrium steady state with non-vanishing currents. Analogously, when detailed balance holds at any instant of time but the system is driven through time-periodic variations of external parameters, it evolves toward a time-periodic state, which can also support non-vanishing currents. In both cases the maintenance of currents throughout the system incurs a cost in terms of entropy production. Here we compare these two scenarios for one dimensional diffusive systems with periodic boundary condition, a framework commonly used to model biological and artificial molecular machines. We first show that the entropy production rate in a periodically driven system is necessarily greater than that in a stationary system without detailed balance, when both are described by the same (time-averaged) current and probability distribution. Next, we show how to construct both a non-equilibrium steady state and a periodic driving that support a given time averaged probability distribution and current. Lastly, we show that although the entropy production rate of a periodically driven system is higher than that of an equivalent steady state, the difference between the two entropy production rates can be tuned to be arbitrarily small.

cond-mat.stat-mech↗

arXiv2018

Coarse-grained patterns in multiplex networks

A new class of patterns for multiplex networks is studied, which consists in a collection of different homogeneous states each referred to a distinct layer. The associated stability diagram exhibits a tricritical point, as a function of the inter-layer diffusion coefficients. The coarse-grained patterns made of alternating homogenous layers, are dynamically selected via non homogeneous perturbations superposed to the underlying, globally homogeneous, fixed point and by properly modulating the coupling strength between layers. Furthermore, layer-homogenous fixed points can turn unstable following a mechanism à la Turing, instigated by the intra-layer diffusion. This novel class of solutions enriches the spectrum of dynamical phenomena as displayed within the variegated realm of multiplex science.

cond-mat.stat-mech↗

arXiv2017

Entropy production in systems with random transition rates

We study the entropy production of a system with a finite number of states connected by random transition rates. The stationary entropy production, driven out of equilibrium both by asymmetric transition rates and by an external probability current, is shown to be composed of two contributions whose exact distributions are calculated in the large system size and close to equilibrium. The first contribution is related to Joule's law for the heat dissipated in a classical electrical circuit whereas the second one has a Gaussian distribution with an extensive average and a finite variance.

cond-mat.stat-mech↗

arXiv2017

Explorability and the origin of Network Sparsity in Living Systems

The increasing volume of ecologically and biologically relevant data has revealed a wide collection of emergent patterns in living systems. Analyzing different datasets, ranging from metabolic gene-regulatory to species interaction networks, we find that these networks are sparse, i.e. the percentage of the active interactions scales inversely proportional to the system size. This puzzling characteristic has been neither yet considered nor explained. Herein, we introduce the new concept of explorability, a measure of the ability of the system to adapt to newly intervening changes. We show that sparsity is an emergent property resulting from a variational principle aiming at the optimization of both explorability and dynamical robustness, the capacity of the system to remain stable after perturbations of the underlying dynamics. Networks with higher connectivities lead to an incremental difficulty to find better values for both the explorability and dynamical robustness, associated with the fine-tuning of the newly added interactions. A relevant characteristic of our solution is its scale invariance, that is, it remains optimal when several communities are assembled togheter. Connectivity is also a key ingredient determining ecosystem stability and our proposed solution contributes to solving May's celebrated complexity-stability paradox.

physics.soc-ph↗

arXiv2015

Pattern formation for reactive species undergoing anisotropic diffusion

Turing instabilities for a two species reaction-diffusion systems is studied under anisotropic diffusion. More specifically, the diffusion constants which characterize the ability of the species to relocate in space are direction sensitive. Under this working hypothesis, the conditions for the onset of the instability are mathematically derived and numerically validated. Patterns which closely resemble those obtained in the classical context of isotropic diffusion, develop when the usual Turing condition is violated, along one of the two accessible directions of migration. Remarkably, the instability can also set in when the activator diffuses faster than the inhibitor, along the direction for which the usual Turing conditions are not matched.

cond-mat.stat-mech↗

arXiv2014

Turing instabilities on Cartesian product networks

The problem of Turing instabilities for a reaction-diffusion system defined on a complex Cartesian product networks is considered. To this end we operate in the linear regime and expand the time dependent perturbation on a basis formed by the tensor product of the eigenvectors of the discrete Laplacian operators, associated to each of the individual networks that build the Cartesian product. The dispersion relation which controls the onset of the instability depends on a set of discrete wave- lenghts, the eigenvalues of the aforementioned Laplacians. Patterns can develop on the Cartesian network, if they are supported on at least one of its constituive sub-graphs. Multiplex networks are also obtained under specific prescriptions. In this case, the criteria for the instability reduce to compact explicit formulae. Numerical simulations carried out for the Mimura-Murray reaction kinetics confirm the adequacy of the proposed theory.

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