arXiv subjects

Daniel N. Wilke

Publications and source records attributed to Daniel N. Wilke.

14 recordsLinked to original sources

arXiv2026

Instrumented data for causal scientific machine learning

Scientific machine learning is limited less by model size than by the data it is trained on. Observational data records what happened but not why; template synthetic data has a known generating process but only for the simulator's template, not the case a user faces. We argue a third option is now operationally feasible: instrumented data, in which every datum carries the mechanistic model that produced it, an explicit uncertainty over that model, and an executable family of counterfactuals. Verification-and-validation (V&V) instrumented image-to-simulation pipelines are one realisation: a sensor observation becomes a fully specified, solver-backed simulation with explicit, editable parameters and a propagated aleatoric/epistemic uncertainty. The substrate is case-specific, mechanistically supervised, and supports causal interventions through Pearl's do-operator. Near-term consequences for validation, auditing, and surrogate training span computational biology, climate, materials, fluid mechanics, and medical imaging; a longer-term, falsifiable implication concerns foundation models for scientific reasoning.

cs.LG↗

arXiv2026

From Perception to Autonomous Computational Modeling: A Multi-Agent Approach

We present a solver-agnostic framework in which coordinated large language model (LLM) agents autonomously execute the complete computational mechanics workflow, from perceptual data of an engineering component through geometry extraction, material inference, discretisation, solver execution, uncertainty quantification, and code-compliant assessment, to an engineering report with actionable recommendations. Agents are formalised as conditioned operators on a shared context space with quality gates that introduce conditional iteration between pipeline layers. We introduce a mathematical framework for extracting engineering information from perceptual data under uncertainty using interval bounds, probability densities, and fuzzy membership functions, and introduce task-dependent conservatism to resolve the ambiguity of what `conservative' means when different limit states are governed by opposing parameter trends. The framework is demonstrated through a finite element analysis pipeline applied to a photograph of a steel L-bracket, producing a 171,504-node tetrahedral mesh, seven analyses across three boundary condition hypotheses, and a code-compliant assessment revealing structural failure with a quantified redesign. All results are presented as generated in the first autonomous iteration without manual correction, reinforcing that a professional engineer must review and sign off on any such analysis.

cs.CE↗

arXiv2026

Towards a data-scale independent regulariser for robust sparse identification of non-linear dynamics

Data normalisation, a common and often necessary preprocessing step in engineering and scientific applications, can severely distort the discovery of governing equations by magnitudebased sparse regression methods. This issue is particularly acute for the Sparse Identification of Nonlinear Dynamics (SINDy) framework, where the core assumption of sparsity is undermined by the interaction between data scaling and measurement noise. The resulting discovered models can be dense, uninterpretable, and physically incorrect. To address this critical vulnerability, we introduce the Sequential Thresholding of Coefficient of Variation (STCV), a novel, computationally efficient sparse regression algorithm that is inherently robust to data scaling. STCV replaces conventional magnitude-based thresholding with a dimensionless statistical metric, the Coefficient Presence (CP), which assesses the statistical validity and consistency of candidate terms in the model library. This shift from magnitude to statistical significance makes the discovery process invariant to arbitrary data scaling. Through comprehensive benchmarking on canonical dynamical systems and practical engineering problems, including a physical mass-spring-damper experiment, we demonstrate that STCV consistently and significantly outperforms standard Sequential Thresholding Least Squares (STLSQ) and Ensemble-SINDy (E-SINDy) on normalised, noisy datasets. The results show that STCV-based methods can successfully identify the correct, sparse physical laws even when other methods fail. By mitigating the distorting effects of normalisation, STCV makes sparse system identification a more reliable and automated tool for real-world applications, thereby enhancing model interpretability and trustworthiness.

cs.LG↗

arXiv2025

Towards scientific machine learning for granular material simulations -- challenges and opportunities

Micro-scale mechanisms, such as inter-particle and particle-fluid interactions, govern the behaviour of granular systems. While particle-scale simulations provide detailed insights into these interactions, their computational cost is often prohibitive. Attended by researchers from both the granular materials (GM) and machine learning (ML) communities, a recent Lorentz Center Workshop on "Machine Learning for Discrete Granular Media" brought the ML community up to date with GM challenges. This position paper emerged from the workshop discussions. We define granular materials and identify seven key challenges that characterise their distinctive behaviour across various scales and regimes, ranging from gas-like to fluid-like and solid-like. Addressing these challenges is essential for developing robust and efficient digital twins for granular systems in various industrial applications. To showcase the potential of ML to the GM community, we present classical and emerging machine/deep learning techniques that have been, or could be, applied to granular materials. We reviewed sequence-based learning models for path-dependent constitutive behaviour, followed by encoder-decoder type models for representing high-dimensional data. We then explore graph neural networks and recent advances in neural operator learning. Lastly, we discuss model-order reduction and probabilistic learning techniques for high-dimensional parameterised systems, which are crucial for quantifying uncertainties arising from physics-based and data-driven models. We present a workflow aimed at unifying data structures and modelling pipelines and guiding readers through the selection, training, and deployment of ML surrogates for granular material simulations. Finally, we illustrate the workflow's practical use with two representative examples, focusing on granular materials in solid-like and fluid-like regimes.

cond-mat.soft↗

arXiv2025

Design for Sensing and Digitalisation (DSD): A Modern Approach to Engineering Design

This paper introduces Design for Sensing and Digitalisation (DSD), a new engineering design paradigm that integrates sensor technology for digitisation and digitalisation from the earliest stages of the design process. Unlike traditional methodologies that treat sensing as an afterthought, DSD emphasises sensor integration, signal path optimisation, and real-time data utilisation as core design principles. The paper outlines DSD's key principles, discusses its role in enabling digital twin technology, and argues for its importance in modern engineering education. By adopting DSD, engineers can create more intelligent and adaptable systems that leverage real-time data for continuous design iteration, operational optimisation and data-driven predictive maintenance.

eess.SY↗

arXiv2024

Generalised envelope spectrum-based signal-to-noise objectives: Formulation, optimisation and application for gear fault detection under time-varying speed conditions

In vibration-based condition monitoring, optimal filter design improves fault detection by enhancing weak fault signatures within vibration signals. This process involves optimising a derived objective function from a defined objective. The objectives are often based on proxy health indicators to determine the filter's parameters. However, these indicators can be compromised by irrelevant extraneous signal components and fluctuating operational conditions, affecting the filter's efficacy. Fault detection primarily uses the fault component's prominence in the squared envelope spectrum, quantified by a squared envelope spectrum-based signal-to-noise ratio. New optimal filter objective functions are derived from the proposed generalised envelope spectrum-based signal-to-noise objective for machines operating under variable speed conditions. Instead of optimising proxy health indicators, the optimal filter coefficients of the formulation directly maximise the squared envelope spectrum-based signal-to-noise ratio over targeted frequency bands using standard gradient-based optimisers. Four derived objective functions from the proposed objective effectively outperform five prominent methods in tests on three experimental datasets.

eess.SP↗

arXiv2023

A spectral regularisation framework for latent variable models designed for single channel applications

Latent variable models (LVMs) are commonly used to capture the underlying dependencies, patterns, and hidden structure in observed data. Source duplication is a by-product of the data hankelisation pre-processing step common to single channel LVM applications, which hinders practical LVM utilisation. In this article, a Python package titled spectrally-regularised-LVMs is presented. The proposed package addresses the source duplication issue via the addition of a novel spectral regularisation term. This package provides a framework for spectral regularisation in single channel LVM applications, thereby making it easier to investigate and utilise LVMs with spectral regularisation. This is achieved via the use of symbolic or explicit representations of potential LVM objective functions which are incorporated into a framework that uses spectral regularisation during the LVM parameter estimation process. The objective of this package is to provide a consistent linear LVM optimisation framework which incorporates spectral regularisation and caters to single channel time-series applications.

stat.ML↗

arXiv2023

Latent Space Perspicacity and Interpretation Enhancement (LS-PIE) Framework

Linear latent variable models such as principal component analysis (PCA), independent component analysis (ICA), canonical correlation analysis (CCA), and factor analysis (FA) identify latent directions (or loadings) either ordered or unordered. The data is then projected onto the latent directions to obtain their projected representations (or scores). For example, PCA solvers usually rank the principal directions by explaining the most to least variance, while ICA solvers usually return independent directions unordered and often with single sources spread across multiple directions as multiple sub-sources, which is of severe detriment to their usability and interpretability. This paper proposes a general framework to enhance latent space representations for improving the interpretability of linear latent spaces. Although the concepts in this paper are language agnostic, the framework is written in Python. This framework automates the clustering and ranking of latent vectors to enhance the latent information per latent vector, as well as, the interpretation of latent vectors. Several innovative enhancements are incorporated including latent ranking (LR), latent scaling (LS), latent clustering (LC), and latent condensing (LCON). For a specified linear latent variable model, LR ranks latent directions according to a specified metric, LS scales latent directions according to a specified metric, LC automatically clusters latent directions into a specified number of clusters, while, LCON automatically determines an appropriate number of clusters into which to condense the latent directions for a given metric. Additional functionality of the framework includes single-channel and multi-channel data sources, data preprocessing strategies such as Hankelisation to seamlessly expand the applicability of linear latent variable models (LLVMs) to a wider variety of data. The effectiveness of LR, LS, and LCON are showcased on two crafted foundational problems with two applied latent variable models, namely, PCA and ICA.

stat.ML↗

arXiv2023

A Novel and Fully Automated Domain Transformation Scheme for Near Optimal Surrogate Construction

Recent developments in surrogate construction predominantly focused on two strategies to improve surrogate accuracy. Firstly, component-wise domain scaling informed by cross-validation. Secondly, regression to construct response surfaces using additional information in the form of additional function-values sampled from multi-fidelity models and gradients. Component-wise domain scaling reliably improves the surrogate quality at low dimensions but has been shown to suffer from high computational costs for higher dimensional problems. The second strategy, adding gradients to train surrogates, typically results in regression surrogates. Counter-intuitively, these gradient-enhanced regression-based surrogates do not exhibit improved accuracy compared to surrogates only interpolating function values. This study empirically establishes three main findings. Firstly, constructing the surrogate in poorly scaled domains is the predominant cause of deteriorating response surfaces when regressing with additional gradient information. Secondly, surrogate accuracy improves if the surrogates are constructed in a fully transformed domain, by scaling and rotating the original domain, not just simply scaling the domain. The domain transformation scheme should be based on the local curvature of the approximation surface and not its global curvature. Thirdly, the main benefit of gradient information is to efficiently determine the (near) optimal domain in which to construct the surrogate. This study proposes a foundational transformation algorithm that performs near-optimal transformations for lower dimensional problems. The algorithm consistently outperforms cross-validation-based component-wise domain scaling for higher dimensional problems. A carefully selected test problem set that varies between 2 and 16-dimensional problems is used to clearly demonstrate the three main findings of this study.

math.OC↗

arXiv2023

On the momentum diffusion over multiphase surfaces with meshless methods

This work investigates the effects of the choice of momentum diffusion operator on the evolution of multiphase fluid systems resolved with Meshless Lagrangian Methods (MLM). Specifically, the effects of a non-zero viscosity gradient at multiphase interfaces are explored. This work shows that both the typical Smoothed Particle Hydrodynamics (SPH) and Generalized Finite Difference (GFD) diffusion operators under-predict the shear divergence at multiphase interfaces. Furthermore, it was shown that larger viscosity ratios increase the significance of this behavior. A multiphase GFD scheme is proposed that makes use of a computationally efficient diffusion operator that accounts for the effects arising from the jump discontinuity in viscosity. This scheme is used to simulate a 3D bubble submerged in a heavier fluid with a density ratio of 2:1 and a dynamic viscosity ratio of 100:1. When comparing the effects of momentum diffusion operators, a discrepancy of 57.2% was observed in the bubble's ascent velocity.

physics.flu-dyn↗

arXiv2021

Traction chain networks: Insights beyond force chain networks for non-spherical particle systems

Force chain networks are generally applied in granular materials to gain insight into inter-particle granular contact. For conservative spherical particle systems, i.e. frictionless and undamped, force chains are information complete due to symmetries resulting from isotropy and constant curvature of a sphere. In fact, for conservative spherical particle systems, given the geometry and material, the force chain network uniquely defines the contact state that includes elastic forces, penetration distance, overlap volume, contact areas and contact pressures in a particle system. This is, however, not the case for conservative non-spherical particle systems. The reason is that a force chain network is not sufficient to uniquely define the contact state in a conservative non-spherical particle system. Additional information is required to define the contact state of non-spherical granular systems. Traction chain networks are proposed to complement force chain networks for the improved quantification of the state of contact of a granular system.

cond-mat.soft↗

arXiv2021

GOALS: Gradient-Only Approximations for Line Searches Towards Robust and Consistent Training of Deep Neural Networks

Mini-batch sub-sampling (MBSS) is favored in deep neural network training to reduce the computational cost. Still, it introduces an inherent sampling error, making the selection of appropriate learning rates challenging. The sampling errors can manifest either as a bias or variances in a line search. Dynamic MBSS re-samples a mini-batch at every function evaluation. Hence, dynamic MBSS results in point-wise discontinuous loss functions with smaller bias but larger variance than static sampled loss functions. However, dynamic MBSS has the advantage of having larger data throughput during training but requires the complexity regarding discontinuities to be resolved. This study extends the gradient-only surrogate (GOS), a line search method using quadratic approximation models built with only directional derivative information, for dynamic MBSS loss functions. We propose a gradient-only approximation line search (GOALS) with strong convergence characteristics with defined optimality criterion. We investigate GOALS's performance by applying it on various optimizers that include SGD, RMSprop and Adam on ResNet-18 and EfficientNetB0. We also compare GOALS's against the other existing learning rate methods. We quantify both the best performing and most robust algorithms. For the latter, we introduce a relative robust criterion that allows us to quantify the difference between an algorithm and the best performing algorithm for a given problem. The results show that training a model with the recommended learning rate for a class of search directions helps to reduce the model errors in multimodal cases.

stat.ML↗

arXiv2020

Resolving learning rates adaptively by locating Stochastic Non-Negative Associated Gradient Projection Points using line searches

Learning rates in stochastic neural network training are currently determined a priori to training, using expensive manual or automated iterative tuning. This study proposes gradient-only line searches to resolve the learning rate for neural network training algorithms. Stochastic sub-sampling during training decreases computational cost and allows the optimization algorithms to progress over local minima. However, it also results in discontinuous cost functions. Minimization line searches are not effective in this context, as they use a vanishing derivative (first order optimality condition), which often do not exist in a discontinuous cost function and therefore converge to discontinuities as opposed to minima from the data trends. Instead, we base candidate solutions along a search direction purely on gradient information, in particular by a directional derivative sign change from negative to positive (a Non-negative Associative Gradient Projection Point (NN- GPP)). Only considering a sign change from negative to positive always indicates a minimum, thus NN-GPPs contain second order information. Conversely, a vanishing gradient is purely a first order condition, which may indicate a minimum, maximum or saddle point. This insight allows the learning rate of an algorithm to be reliably resolved as the step size along a search direction, increasing convergence performance and eliminating an otherwise expensive hyperparameter.

stat.ML↗

arXiv2019

Empirical study towards understanding line search approximations for training neural networks

Choosing appropriate step sizes is critical for reducing the computational cost of training large-scale neural network models. Mini-batch sub-sampling (MBSS) is often employed for computational tractability. However, MBSS introduces a sampling error, that can manifest as a bias or variance in a line search. This is because MBSS can be performed statically, where the mini-batch is updated only when the search direction changes, or dynamically, where the mini-batch is updated every-time the function is evaluated. Static MBSS results in a smooth loss function along a search direction, reflecting low variance but large bias in the estimated "true" (or full batch) minimum. Conversely, dynamic MBSS results in a point-wise discontinuous function, with computable gradients using backpropagation, along a search direction, reflecting high variance but lower bias in the estimated "true" (or full batch) minimum. In this study, quadratic line search approximations are considered to study the quality of function and derivative information to construct approximations for dynamic MBSS loss functions. An empirical study is conducted where function and derivative information are enforced in various ways for the quadratic approximations. The results for various neural network problems show that being selective on what information is enforced helps to reduce the variance of predicted step sizes.

stat.ML↗