arXiv subjects

Daniel P. Jeong

Publications and source records attributed to Daniel P. Jeong.

5 recordsLinked to original sources

arXiv2026

Reporting Practice Matters: The Impact of Reference Choice on Chest X-ray Report Evaluation

Radiologists follow heterogeneous reporting practices. Two radiologists examining the same image and identifying the same clinical findings might nevertheless compose superficially distinct reports, varying in terminology, shorthand, formatting, and level of detail. These variations in reporting norms represent an under-appreciated obstacle in efforts to evaluate AI-based radiology report generation (RRG) models, where machine-generated reports are typically assessed based on their concordance with human-generated references. In this paper, we quantify the sensitivity of established evaluation metrics to variations in reporting practices, revealing impacts large enough to alter the rankings of models. We introduce a radiologist-informed taxonomy of variations in radiology reporting practice and a method (ReRef) that rewrites reference reports along the axes of our taxonomy while preserving clinical interpretation. For instance, when comparing the performance of nine RRG models on MIMIC-CXR using RadCliQ-v1, condensing the discussion of normal findings in the reference reports causes Libra to drop from first to second place while CheXOne rises from third to first. Our results suggest that many current metrics fail to decouple clinical interpretation from conformity to reporting practices and that choosing the ``right'' references that accurately reflect the desired reporting practices can be important in practice. To support future research, we release MIMIC-CXR-Ext-ReRef, a radiologist-validated dataset of 120 (original, alternative) reference report pairs derived from MIMIC-CXR.

cs.CL↗

arXiv2025

The Limited Impact of Medical Adaptation of Large Language and Vision-Language Models

Several recent works seek to adapt general-purpose large language models (LLMs) and vision-language models (VLMs) for medical applications through continued pretraining on publicly available biomedical corpora. These works typically claim that such domain-adaptive pretraining improves performance on various downstream medical tasks, such as answering medical exam questions. In this paper, we compare ten "medical" LLMs and two VLMs against their corresponding base models, arriving at a different conclusion: all medical VLMs and nearly all medical LLMs fail to consistently improve over their base models in the zero-/few-shot prompting and supervised fine-tuning regimes for medical question answering (QA). For instance, on clinical-note-based QA tasks in the 3-shot setting, medical LLMs outperform their base models in only 26.7% of cases, reach a (statistical) tie in 16.7% of cases, and perform significantly worse in the remaining 56.7% of cases. Our conclusions are based on (i) comparing each medical model directly against its base model; (ii) optimizing the prompts for each model separately in zero-/few-shot prompting; and (iii) accounting for statistical uncertainty in comparisons. Our findings suggest that state-of-the-art general-domain models may already exhibit strong medical knowledge and reasoning capabilities, and offer recommendations to strengthen the conclusions of future studies.

cs.CL↗

arXiv2025

LLM-Select: Feature Selection with Large Language Models

In this paper, we demonstrate a surprising capability of large language models (LLMs): given only input feature names and a description of a prediction task, they are capable of selecting the most predictive features, with performance rivaling the standard tools of data science. Remarkably, these models exhibit this capacity across various query mechanisms. For example, we zero-shot prompt an LLM to output a numerical importance score for a feature (e.g., "blood pressure") in predicting an outcome of interest (e.g., "heart failure"), with no additional context. In particular, we find that the latest models, such as GPT-4, can consistently identify the most predictive features regardless of the query mechanism and across various prompting strategies. We illustrate these findings through extensive experiments on real-world data, where we show that LLM-based feature selection consistently achieves strong performance competitive with data-driven methods such as the LASSO, despite never having looked at the downstream training data. Our findings suggest that LLMs may be useful not only for selecting the best features for training but also for deciding which features to collect in the first place. This could benefit practitioners in domains like healthcare and the social sciences, where collecting high-quality data comes at a high cost.

cs.LG↗

arXiv2024

Medical Adaptation of Large Language and Vision-Language Models: Are We Making Progress?

Several recent works seek to develop foundation models specifically for medical applications, adapting general-purpose large language models (LLMs) and vision-language models (VLMs) via continued pretraining on publicly available biomedical corpora. These works typically claim that such domain-adaptive pretraining (DAPT) improves performance on downstream medical tasks, such as answering medical licensing exam questions. In this paper, we compare seven public "medical" LLMs and two VLMs against their corresponding base models, arriving at a different conclusion: all medical VLMs and nearly all medical LLMs fail to consistently improve over their base models in the zero-/few-shot prompting regime for medical question-answering (QA) tasks. For instance, across the tasks and model pairs we consider in the 3-shot setting, medical LLMs only outperform their base models in 12.1% of cases, reach a (statistical) tie in 49.8% of cases, and are significantly worse than their base models in the remaining 38.2% of cases. Our conclusions are based on (i) comparing each medical model head-to-head, directly against the corresponding base model; (ii) optimizing the prompts for each model separately; and (iii) accounting for statistical uncertainty in comparisons. While these basic practices are not consistently adopted in the literature, our ablations show that they substantially impact conclusions. Our findings suggest that state-of-the-art general-domain models may already exhibit strong medical knowledge and reasoning capabilities, and offer recommendations to strengthen the conclusions of future studies.

cs.CL↗

arXiv2024

Bayesian Neural Networks with Domain Knowledge Priors

Bayesian neural networks (BNNs) have recently gained popularity due to their ability to quantify model uncertainty. However, specifying a prior for BNNs that captures relevant domain knowledge is often extremely challenging. In this work, we propose a framework for integrating general forms of domain knowledge (i.e., any knowledge that can be represented by a loss function) into a BNN prior through variational inference, while enabling computationally efficient posterior inference and sampling. Specifically, our approach results in a prior over neural network weights that assigns high probability mass to models that better align with our domain knowledge, leading to posterior samples that also exhibit this behavior. We show that BNNs using our proposed domain knowledge priors outperform those with standard priors (e.g., isotropic Gaussian, Gaussian process), successfully incorporating diverse types of prior information such as fairness, physics rules, and healthcare knowledge and achieving better predictive performance. We also present techniques for transferring the learned priors across different model architectures, demonstrating their broad utility across various settings.

cs.LG↗