arXiv subjects

Daniel R. Kowal

Publications and source records attributed to Daniel R. Kowal.

25 records · Page 2Linked to original sources

arXiv2019

Simultaneous Transformation and Rounding (STAR) Models for Integer-Valued Data

We propose a simple yet powerful framework for modeling integer-valued data, such as counts, scores, and rounded data. The data-generating process is defined by Simultaneously Transforming and Rounding (STAR) a continuous-valued process, which produces a flexible family of integer-valued distributions capable of modeling zero-inflation, bounded or censored data, and over- or underdispersion. The transformation is modeled as unknown for greater distributional flexibility, while the rounding operation ensures a coherent integer-valued data-generating process. An efficient MCMC algorithm is developed for posterior inference and provides a mechanism for adaptation of successful Bayesian models and algorithms for continuous data to the integer-valued data setting. Using the STAR framework, we design a new Bayesian Additive Regression Tree (BART) model for integer-valued data, which demonstrates impressive predictive distribution accuracy for both synthetic data and a large healthcare utilization dataset. For interpretable regression-based inference, we develop a STAR additive model, which offers greater flexibility and scalability than existing integer-valued models. The STAR additive model is applied to study the recent decline in Amazon river dolphins.

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arXiv2019

Integer-Valued Functional Data Analysis for Measles Forecasting

Measles presents a unique and imminent challenge for epidemiologists and public health officials: the disease is highly contagious, yet vaccination rates are declining precipitously in many localities. Consequently, the risk of a measles outbreak continues to rise. To improve preparedness, we study historical measles data both pre- and post-vaccine, and design new methodology to forecast measles counts with uncertainty quantification. We propose to model the disease counts as an integer-valued functional time series: measles counts are a function of time-of-year and time-ordered by year. The counts are modeled using a negative-binomial distribution conditional on a real-valued latent process, which accounts for the overdispersion observed in the data. The latent process is decomposed using an unknown basis expansion, which is learned from the data, with dynamic basis coefficients. The resulting framework provides enhanced capability to model complex seasonality, which varies dynamically from year-to-year, and offers improved multi-month ahead point forecasts and substantially tighter forecast intervals (with correct coverage) compared to existing forecasting models. Importantly, the fully Bayesian approach provides well-calibrated and precise uncertainty quantification for epi-relevent features, such as the future value and time of the peak measles count in a given year. An R package is available online.

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arXiv2018

Dynamic Function-on-Scalars Regression

We develop a modeling framework for dynamic function-on-scalars regression, in which a time series of functional data is regressed on a time series of scalar predictors. The regression coefficient function for each predictor is allowed to be dynamic, which is essential for applications where the association between predictors and a (functional) response is time-varying. For greater modeling flexibility, we design a nonparametric reduced-rank functional data model with an unknown functional basis expansion, which is data-adaptive and, unlike most existing methods, modeled as unknown for appropriate uncertainty quantification. Within a Bayesian framework, we introduce shrinkage priors that simultaneously (i) regularize time-varying regression coefficient functions to be locally static, (ii) effectively remove unimportant predictor variables from the model, and (iii) reduce sensitivity to the dimension of the functional basis. A simulation analysis confirms the importance of these shrinkage priors, with notable improvements over existing alternatives. We develop a novel projection-based Gibbs sampling algorithm, which offers unrivaled computational scalability for fully Bayesian functional regression. We apply the proposed methodology (i) to analyze the time-varying impact of macroeconomic variables on the U.S. yield curve and (ii) to characterize the effects of socioeconomic and demographic predictors on age-specific fertility rates in South and Southeast Asia.

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arXiv2018

Bayesian Function-on-Scalars Regression for High Dimensional Data

We develop a fully Bayesian framework for function-on-scalars regression with many predictors. The functional data response is modeled nonparametrically using unknown basis functions, which produces a flexible and data-adaptive functional basis. We incorporate shrinkage priors that effectively remove unimportant scalar covariates from the model and reduce sensitivity to the number of (unknown) basis functions. For variable selection in functional regression, we propose a decision theoretic posterior summarization technique, which identifies a subset of covariates that retains nearly the predictive accuracy of the full model. Our approach is broadly applicable for Bayesian functional regression models, and unlike existing methods provides joint rather than marginal selection of important predictor variables. Computationally scalable posterior inference is achieved using a Gibbs sampler with linear time complexity in the number of predictors. The resulting algorithm is empirically faster than existing frequentist and Bayesian techniques, and provides joint estimation of model parameters, prediction and imputation of functional trajectories, and uncertainty quantification via the posterior distribution. A simulation study demonstrates improvements in estimation accuracy, uncertainty quantification, and variable selection relative to existing alternatives. The methodology is applied to actigraphy data to investigate the association between intraday physical activity and responses to a sleep questionnaire.

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arXiv2018

Dynamic Shrinkage Processes

We propose a novel class of dynamic shrinkage processes for Bayesian time series and regression analysis. Building upon a global-local framework of prior construction, in which continuous scale mixtures of Gaussian distributions are employed for both desirable shrinkage properties and computational tractability, we model dependence among the local scale parameters. The resulting processes inherit the desirable shrinkage behavior of popular global-local priors, such as the horseshoe prior, but provide additional localized adaptivity, which is important for modeling time series data or regression functions with local features. We construct a computationally efficient Gibbs sampling algorithm based on a Pólya-Gamma scale mixture representation of the proposed process. Using dynamic shrinkage processes, we develop a Bayesian trend filtering model that produces more accurate estimates and tighter posterior credible intervals than competing methods, and apply the model for irregular curve-fitting of minute-by-minute Twitter CPU usage data. In addition, we develop an adaptive time-varying parameter regression model to assess the efficacy of the Fama-French five-factor asset pricing model with momentum added as a sixth factor. Our dynamic analysis of manufacturing and healthcare industry data shows that with the exception of the market risk, no other risk factors are significant except for brief periods.

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arXiv2016

Functional Autoregression for Sparsely Sampled Data

We develop a hierarchical Gaussian process model for forecasting and inference of functional time series data. Unlike existing methods, our approach is especially suited for sparsely or irregularly sampled curves and for curves sampled with non-negligible measurement error. The latent process is dynamically modeled as a functional autoregression (FAR) with Gaussian process innovations. We propose a fully nonparametric dynamic functional factor model for the dynamic innovation process, with broader applicability and improved computational efficiency over standard Gaussian process models. We prove finite-sample forecasting and interpolation optimality properties of the proposed model, which remain valid with the Gaussian assumption relaxed. An efficient Gibbs sampling algorithm is developed for estimation, inference, and forecasting, with extensions for FAR(p) models with model averaging over the lag p. Extensive simulations demonstrate substantial improvements in forecasting performance and recovery of the autoregressive surface over competing methods, especially under sparse designs. We apply the proposed methods to forecast nominal and real yield curves using daily U.S. data. Real yields are observed more sparsely than nominal yields, yet the proposed methods are highly competitive in both settings.

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arXiv2015

A Bayesian Multivariate Functional Dynamic Linear Model

We present a Bayesian approach for modeling multivariate, dependent functional data. To account for the three dominant structural features in the data--functional, time dependent, and multivariate components--we extend hierarchical dynamic linear models for multivariate time series to the functional data setting. We also develop Bayesian spline theory in a more general constrained optimization framework. The proposed methods identify a time-invariant functional basis for the functional observations, which is smooth and interpretable, and can be made common across multivariate observations for additional information sharing. The Bayesian framework permits joint estimation of the model parameters, provides exact inference (up to MCMC error) on specific parameters, and allows generalized dependence structures. Sampling from the posterior distribution is accomplished with an efficient Gibbs sampling algorithm. We illustrate the proposed framework with two applications: (1) multi-economy yield curve data from the recent global recession, and (2) local field potential brain signals in rats, for which we develop a multivariate functional time series approach for multivariate time-frequency analysis. Supplementary materials, including R code and the multi-economy yield curve data, are available online.

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