arXiv subjects

Daniel S. Weld

Publications and source records attributed to Daniel S. Weld.

At least 55 records · Page 3Linked to original sources

arXiv2022

A Search Engine for Discovery of Scientific Challenges and Directions

Keeping track of scientific challenges, advances and emerging directions is a fundamental part of research. However, researchers face a flood of papers that hinders discovery of important knowledge. In biomedicine, this directly impacts human lives. To address this problem, we present a novel task of extraction and search of scientific challenges and directions, to facilitate rapid knowledge discovery. We construct and release an expert-annotated corpus of texts sampled from full-length papers, labeled with novel semantic categories that generalize across many types of challenges and directions. We focus on a large corpus of interdisciplinary work relating to the COVID-19 pandemic, ranging from biomedicine to areas such as AI and economics. We apply a model trained on our data to identify challenges and directions across the corpus and build a dedicated search engine. In experiments with 19 researchers and clinicians using our system, we outperform a popular scientific search engine in assisting knowledge discovery. Finally, we show that models trained on our resource generalize to the wider biomedical domain and to AI papers, highlighting its broad utility. We make our data, model and search engine publicly available. https://challenges.apps.allenai.org/

cs.CL↗

arXiv2022

VILA: Improving Structured Content Extraction from Scientific PDFs Using Visual Layout Groups

Accurately extracting structured content from PDFs is a critical first step for NLP over scientific papers. Recent work has improved extraction accuracy by incorporating elementary layout information, e.g., each token's 2D position on the page, into language model pretraining. We introduce new methods that explicitly model VIsual LAyout (VILA) groups, i.e., text lines or text blocks, to further improve performance. In our I-VILA approach, we show that simply inserting special tokens denoting layout group boundaries into model inputs can lead to a 1.9% Macro F1 improvement in token classification. In the H-VILA approach, we show that hierarchical encoding of layout-groups can result in up-to 47% inference time reduction with less than 0.8% Macro F1 loss. Unlike prior layout-aware approaches, our methods do not require expensive additional pretraining, only fine-tuning, which we show can reduce training cost by up to 95%. Experiments are conducted on a newly curated evaluation suite, S2-VLUE, that unifies existing automatically-labeled datasets and includes a new dataset of manual annotations covering diverse papers from 19 scientific disciplines. Pre-trained weights, benchmark datasets, and source code are available at https://github.com/allenai/VILA.

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arXiv2021

Exploring The Role of Local and Global Explanations in Recommender Systems

Explanations are well-known to improve recommender systems' transparency. These explanations may be local, explaining an individual recommendation, or global, explaining the recommender model in general. Despite their widespread use, there has been little investigation into the relative benefits of these two approaches. Do they provide the same benefits to users, or do they serve different purposes? We conducted a 30-participant exploratory study and a 30-participant controlled user study with a research-paper recommender system to analyze how providing participants local, global, or both explanations influences user understanding of system behavior. Our results provide evidence suggesting that both explanations are more helpful than either alone for explaining how to improve recommendations, yet both appeared less helpful than global alone for efficiency in identifying false positives and negatives. However, we note that the two explanation approaches may be better compared in the context of a higher-stakes or more opaque domain.

cs.IR↗

arXiv2021

Goldilocks: Consistent Crowdsourced Scalar Annotations with Relative Uncertainty

Human ratings have become a crucial resource for training and evaluating machine learning systems. However, traditional elicitation methods for absolute and comparative rating suffer from issues with consistency and often do not distinguish between uncertainty due to disagreement between annotators and ambiguity inherent to the item being rated. In this work, we present Goldilocks, a novel crowd rating elicitation technique for collecting calibrated scalar annotations that also distinguishes inherent ambiguity from inter-annotator disagreement. We introduce two main ideas: grounding absolute rating scales with examples and using a two-step bounding process to establish a range for an item's placement. We test our designs in three domains: judging toxicity of online comments, estimating satiety of food depicted in images, and estimating age based on portraits. We show that (1) Goldilocks can improve consistency in domains where interpretation of the scale is not universal, and that (2) representing items with ranges lets us simultaneously capture different sources of uncertainty leading to better estimates of pairwise relationship distributions.

cs.HC↗

arXiv2021

Polyjuice: Generating Counterfactuals for Explaining, Evaluating, and Improving Models

While counterfactual examples are useful for analysis and training of NLP models, current generation methods either rely on manual labor to create very few counterfactuals, or only instantiate limited types of perturbations such as paraphrases or word substitutions. We present Polyjuice, a general-purpose counterfactual generator that allows for control over perturbation types and locations, trained by finetuning GPT-2 on multiple datasets of paired sentences. We show that Polyjuice produces diverse sets of realistic counterfactuals, which in turn are useful in various distinct applications: improving training and evaluation on three different tasks (with around 70% less annotation effort than manual generation), augmenting state-of-the-art explanation techniques, and supporting systematic counterfactual error analysis by revealing behaviors easily missed by human experts.

cs.CL↗

arXiv2021

Improving the Accessibility of Scientific Documents: Current State, User Needs, and a System Solution to Enhance Scientific PDF Accessibility for Blind and Low Vision Users

The majority of scientific papers are distributed in PDF, which pose challenges for accessibility, especially for blind and low vision (BLV) readers. We characterize the scope of this problem by assessing the accessibility of 11,397 PDFs published 2010--2019 sampled across various fields of study, finding that only 2.4% of these PDFs satisfy all of our defined accessibility criteria. We introduce the SciA11y system to offset some of the issues around inaccessibility. SciA11y incorporates several machine learning models to extract the content of scientific PDFs and render this content as accessible HTML, with added novel navigational features to support screen reader users. An intrinsic evaluation of extraction quality indicates that the majority of HTML renders (87%) produced by our system have no or only some readability issues. We perform a qualitative user study to understand the needs of BLV researchers when reading papers, and to assess whether the SciA11y system could address these needs. We summarize our user study findings into a set of five design recommendations for accessible scientific reader systems. User response to SciA11y was positive, with all users saying they would be likely to use the system in the future, and some stating that the system, if available, would become their primary workflow. We successfully produce HTML renders for over 12M papers, of which an open access subset of 1.5M are available for browsing at https://scia11y.org/

cs.DL↗

arXiv2021

Augmenting Scientific Papers with Just-in-Time, Position-Sensitive Definitions of Terms and Symbols

Despite the central importance of research papers to scientific progress, they can be difficult to read. Comprehension is often stymied when the information needed to understand a passage resides somewhere else: in another section, or in another paper. In this work, we envision how interfaces can bring definitions of technical terms and symbols to readers when and where they need them most. We introduce ScholarPhi, an augmented reading interface with four novel features: (1) tooltips that surface position-sensitive definitions from elsewhere in a paper, (2) a filter over the paper that "declutters" it to reveal how the term or symbol is used across the paper, (3) automatic equation diagrams that expose multiple definitions in parallel, and (4) an automatically generated glossary of important terms and symbols. A usability study showed that the tool helps researchers of all experience levels read papers. Furthermore, researchers were eager to have ScholarPhi's definitions available to support their everyday reading.

cs.HC↗

arXiv2021

Is the Most Accurate AI the Best Teammate? Optimizing AI for Teamwork

AI practitioners typically strive to develop the most accurate systems, making an implicit assumption that the AI system will function autonomously. However, in practice, AI systems often are used to provide advice to people in domains ranging from criminal justice and finance to healthcare. In such AI-advised decision making, humans and machines form a team, where the human is responsible for making final decisions. But is the most accurate AI the best teammate? We argue "No" -- predictable performance may be worth a slight sacrifice in AI accuracy. Instead, we argue that AI systems should be trained in a human-centered manner, directly optimized for team performance. We study this proposal for a specific type of human-AI teaming, where the human overseer chooses to either accept the AI recommendation or solve the task themselves. To optimize the team performance for this setting we maximize the team's expected utility, expressed in terms of the quality of the final decision, cost of verifying, and individual accuracies of people and machines. Our experiments with linear and non-linear models on real-world, high-stakes datasets show that the most accuracy AI may not lead to highest team performance and show the benefit of modeling teamwork during training through improvements in expected team utility across datasets, considering parameters such as human skill and the cost of mistakes. We discuss the shortcoming of current optimization approaches beyond well-studied loss functions such as log-loss, and encourage future work on AI optimization problems motivated by human-AI collaboration.

cs.AI↗

arXiv2021

Does the Whole Exceed its Parts? The Effect of AI Explanations on Complementary Team Performance

Many researchers motivate explainable AI with studies showing that human-AI team performance on decision-making tasks improves when the AI explains its recommendations. However, prior studies observed improvements from explanations only when the AI, alone, outperformed both the human and the best team. Can explanations help lead to complementary performance, where team accuracy is higher than either the human or the AI working solo? We conduct mixed-method user studies on three datasets, where an AI with accuracy comparable to humans helps participants solve a task (explaining itself in some conditions). While we observed complementary improvements from AI augmentation, they were not increased by explanations. Rather, explanations increased the chance that humans will accept the AI's recommendation, regardless of its correctness. Our result poses new challenges for human-centered AI: Can we develop explanatory approaches that encourage appropriate trust in AI, and therefore help generate (or improve) complementary performance?

cs.AI↗

arXiv2020

Document-Level Definition Detection in Scholarly Documents: Existing Models, Error Analyses, and Future Directions

The task of definition detection is important for scholarly papers, because papers often make use of technical terminology that may be unfamiliar to readers. Despite prior work on definition detection, current approaches are far from being accurate enough to use in real-world applications. In this paper, we first perform in-depth error analysis of the current best performing definition detection system and discover major causes of errors. Based on this analysis, we develop a new definition detection system, HEDDEx, that utilizes syntactic features, transformer encoders, and heuristic filters, and evaluate it on a standard sentence-level benchmark. Because current benchmarks evaluate randomly sampled sentences, we propose an alternative evaluation that assesses every sentence within a document. This allows for evaluating recall in addition to precision. HEDDEx outperforms the leading system on both the sentence-level and the document-level tasks, by 12.7 F1 points and 14.4 F1 points, respectively. We note that performance on the high-recall document-level task is much lower than in the standard evaluation approach, due to the necessity of incorporation of document structure as features. We discuss remaining challenges in document-level definition detection, ideas for improvements, and potential issues for the development of reading aid applications.

cs.CL↗

arXiv2020

TLDR: Extreme Summarization of Scientific Documents

We introduce TLDR generation, a new form of extreme summarization, for scientific papers. TLDR generation involves high source compression and requires expert background knowledge and understanding of complex domain-specific language. To facilitate study on this task, we introduce SciTLDR, a new multi-target dataset of 5.4K TLDRs over 3.2K papers. SciTLDR contains both author-written and expert-derived TLDRs, where the latter are collected using a novel annotation protocol that produces high-quality summaries while minimizing annotation burden. We propose CATTS, a simple yet effective learning strategy for generating TLDRs that exploits titles as an auxiliary training signal. CATTS improves upon strong baselines under both automated metrics and human evaluations. Data and code are publicly available at https://github.com/allenai/scitldr.

cs.CL↗

arXiv2020

SciSight: Combining faceted navigation and research group detection for COVID-19 exploratory scientific search

The COVID-19 pandemic has sparked unprecedented mobilization of scientists, generating a deluge of papers that makes it hard for researchers to keep track and explore new directions. Search engines are designed for targeted queries, not for discovery of connections across a corpus. In this paper, we present SciSight, a system for exploratory search of COVID-19 research integrating two key capabilities: first, exploring associations between biomedical facets automatically extracted from papers (e.g., genes, drugs, diseases, patient outcomes); second, combining textual and network information to search and visualize groups of researchers and their ties. SciSight has so far served over $15K$ users with over $42K$ page views and $13\%$ returns.

cs.IR↗

arXiv2020

CORD-19: The COVID-19 Open Research Dataset

The COVID-19 Open Research Dataset (CORD-19) is a growing resource of scientific papers on COVID-19 and related historical coronavirus research. CORD-19 is designed to facilitate the development of text mining and information retrieval systems over its rich collection of metadata and structured full text papers. Since its release, CORD-19 has been downloaded over 200K times and has served as the basis of many COVID-19 text mining and discovery systems. In this article, we describe the mechanics of dataset construction, highlighting challenges and key design decisions, provide an overview of how CORD-19 has been used, and describe several shared tasks built around the dataset. We hope this resource will continue to bring together the computing community, biomedical experts, and policy makers in the search for effective treatments and management policies for COVID-19.

cs.DL↗

arXiv2020

High-Precision Extraction of Emerging Concepts from Scientific Literature

Identification of new concepts in scientific literature can help power faceted search, scientific trend analysis, knowledge-base construction, and more, but current methods are lacking. Manual identification cannot keep up with the torrent of new publications, while the precision of existing automatic techniques is too low for many applications. We present an unsupervised concept extraction method for scientific literature that achieves much higher precision than previous work. Our approach relies on a simple but novel intuition: each scientific concept is likely to be introduced or popularized by a single paper that is disproportionately cited by subsequent papers mentioning the concept. From a corpus of computer science papers on arXiv, we find that our method achieves a Precision@1000 of 99%, compared to 86% for prior work, and a substantially better precision-yield trade-off across the top 15,000 extractions. To stimulate research in this area, we release our code and data (https://github.com/allenai/ForeCite).

cs.IR↗

arXiv2020

SPECTER: Document-level Representation Learning using Citation-informed Transformers

Representation learning is a critical ingredient for natural language processing systems. Recent Transformer language models like BERT learn powerful textual representations, but these models are targeted towards token- and sentence-level training objectives and do not leverage information on inter-document relatedness, which limits their document-level representation power. For applications on scientific documents, such as classification and recommendation, the embeddings power strong performance on end tasks. We propose SPECTER, a new method to generate document-level embedding of scientific documents based on pretraining a Transformer language model on a powerful signal of document-level relatedness: the citation graph. Unlike existing pretrained language models, SPECTER can be easily applied to downstream applications without task-specific fine-tuning. Additionally, to encourage further research on document-level models, we introduce SciDocs, a new evaluation benchmark consisting of seven document-level tasks ranging from citation prediction, to document classification and recommendation. We show that SPECTER outperforms a variety of competitive baselines on the benchmark.

cs.CL↗

arXiv2020

The Newspaper Navigator Dataset: Extracting And Analyzing Visual Content from 16 Million Historic Newspaper Pages in Chronicling America

Chronicling America is a product of the National Digital Newspaper Program, a partnership between the Library of Congress and the National Endowment for the Humanities to digitize historic newspapers. Over 16 million pages of historic American newspapers have been digitized for Chronicling America to date, complete with high-resolution images and machine-readable METS/ALTO OCR. Of considerable interest to Chronicling America users is a semantified corpus, complete with extracted visual content and headlines. To accomplish this, we introduce a visual content recognition model trained on bounding box annotations of photographs, illustrations, maps, comics, and editorial cartoons collected as part of the Library of Congress's Beyond Words crowdsourcing initiative and augmented with additional annotations including those of headlines and advertisements. We describe our pipeline that utilizes this deep learning model to extract 7 classes of visual content: headlines, photographs, illustrations, maps, comics, editorial cartoons, and advertisements, complete with textual content such as captions derived from the METS/ALTO OCR, as well as image embeddings for fast image similarity querying. We report the results of running the pipeline on 16.3 million pages from the Chronicling America corpus and describe the resulting Newspaper Navigator dataset, the largest dataset of extracted visual content from historic newspapers ever produced. The Newspaper Navigator dataset, finetuned visual content recognition model, and all source code are placed in the public domain for unrestricted re-use.

cs.IR↗

arXiv2020

SpanBERT: Improving Pre-training by Representing and Predicting Spans

We present SpanBERT, a pre-training method that is designed to better represent and predict spans of text. Our approach extends BERT by (1) masking contiguous random spans, rather than random tokens, and (2) training the span boundary representations to predict the entire content of the masked span, without relying on the individual token representations within it. SpanBERT consistently outperforms BERT and our better-tuned baselines, with substantial gains on span selection tasks such as question answering and coreference resolution. In particular, with the same training data and model size as BERT-large, our single model obtains 94.6% and 88.7% F1 on SQuAD 1.1 and 2.0, respectively. We also achieve a new state of the art on the OntoNotes coreference resolution task (79.6\% F1), strong performance on the TACRED relation extraction benchmark, and even show gains on GLUE.

cs.CL↗

arXiv2019

BERT for Coreference Resolution: Baselines and Analysis

We apply BERT to coreference resolution, achieving strong improvements on the OntoNotes (+3.9 F1) and GAP (+11.5 F1) benchmarks. A qualitative analysis of model predictions indicates that, compared to ELMo and BERT-base, BERT-large is particularly better at distinguishing between related but distinct entities (e.g., President and CEO). However, there is still room for improvement in modeling document-level context, conversations, and mention paraphrasing. Our code and models are publicly available.

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