arXiv subjects

Daniel Sebastiani

Publications and source records attributed to Daniel Sebastiani.

7 recordsLinked to original sources

arXiv2025

Bridging Atomistic and Mesoscale Lithium Transport via Machine-Learned Force Fields and Markov State Models

Lithium diffusion in solid-state battery anodes occurs through thermally activated hops between metastable sites often separated by large energy barriers, making such events rare on ab initio molecular dynamics (AIMD) timescales. Here, we present a bottom-up multiscale workflow that integrates AIMD, machine-learned force fields (MLFFs), and Markov state models (MSMs) to establish a quantitatively consistent link between atomistic hopping mechanisms and mesoscale transport. MLFFs fine-tuned on AIMD reference data retain near-DFT accuracy while enabling large-scale molecular dynamics simulations extending to tens of nanoseconds. These extended trajectories remove the strong finite-size bias present in AIMD and yield diffusion coefficients in excellent agreement with experiment. Furthermore, from these long MLFF trajectories, we obtain statistically converged lithium jump networks and construct MSMs that remain Markovian across more than two orders of magnitude in the lag times used for their construction. The resulting MSMs faithfully reproduce mean-square displacements and recover rare diffusion processes that do not occur on AIMD timescales. In addition to propagating lithium distributions, the MSM transition matrices provide mechanistic insight: their eigenvalues and eigenvectors encode characteristic relaxation timescales and dominant transport pathways. Although demonstrated for defect-free crystalline Li$_x$Si$_y$ phases, the AIMD$\rightarrow$MLFF$\rightarrow$MSM framework is general and provides a transferable approach for describing lithium transport in amorphous materials, defect-mediated diffusion, and next-generation solid-state anodes.

physics.chem-ph↗

arXiv2025

Hydroxide Mobility in Aqueous Systems: Ab Initio Accuracy with Millisecond Timescales

We present a multiscale simulation approach for hydroxide transport in aqueous solutions of potassium hydroxide, combining ab initio molecular dynamics (AIMD) simulations with force field ensemble averaging and lattice Monte Carlo techniques. This method achieves near ab initio accuracy by capturing the femtosecond scale dielectric relaxation dynamics of the aqueous hydrogen bonding network, while extending the simulation capability to millisecond diffusion timescales. This extraordinary extension of the available length and time scales enables future studies of hydroxide mobility in functional materials such as nanostructured anion-exchange membranes, where hydroxide ions migrate through nanometer-sized channels. Remarkably, our approach demonstrates that a single AIMD trajectory is sufficient to predict hydroxide conductivity over a range of concentrations, underscoring its computational efficiency and relevance to the design of advanced energy materials.

physics.comp-ph↗

arXiv2021

Ultrafast Proton Transport between a Hydroxy Acid and a Nitrogen Base along Solvent Bridges Governed by Hydroxide/Methoxide Transfer Mechanism

Aqueous proton transport plays a key role in acid-base neutralization, and energy transport through biological membranes and hydrogen fuel cells. Extensive experimental and theoretical studies have resulted in a highly detailed elucidation of one of the underlying microscopic mechanisms for aqueous excess proton transport, known as the von Grotthuss mechanism, involving different hydrated proton configurations with associated high fluxional structural dynamics. Hydroxide transport, with approximately two-fold lower bulk diffusion rates than those of excess protons, has received much less attention. We present femtosecond UV/IR pump-probe experiments and ab initio molecular dynamics simulations of different proton transport pathways of the bifunctional photoacid 7-hydroxyquinoline (7HQ) in water-methanol mixtures. For 7HQ solvent-dependent photoacidity, free energy-reactivity correlation behaviour and QM/MM trajectories point to a dominant OH-/CH3O- transport pathway, for all water-methanol mixing ratios investigated. This provides conclusive evidence for the hydrolysis/methanolysis acid-base neutralization pathway formulated by Manfred Eigen half a century ago.

physics.chem-ph↗

arXiv2020

From flat to tilted: gradual interfaces in organic thin film growth

We investigate domain formation and local morphology of thin films of $\alpha$-sexithiophene ($\alpha$-6T) on Au(100) beyond monolayer coverage by combining high resolution scanning tunneling microscopy (STM) experiments with electronic structure theory calculations and computational structure search. We report a layerwise growth of highly-ordered enantiopure domains. For the second and third layer, we show that the molecular orbitals of individual $\alpha$-6T molecules can be well resolved by STM, providing access to detailed information on the molecular orientation. We find that already in the second layer the molecules abandon the flat adsorption structure of the monolayer and adopt a tilted conformation. Although the observed tilted arrangement resembles the orientation of $\alpha$-6T in the bulk, the observed morphology does not yet correspond to a well-defined surface of the $\alpha$-6T bulk structure. A similar behavior is found for the third layer indicating a growth mechanism where the bulk structure is gradually adopted over several layers.

cond-mat.mtrl-sci↗

arXiv2016

On the mass of atoms in molecules: Beyond the Born-Oppenheimer approximation

Describing the dynamics of nuclei in molecules requires a potential energy surface, which is traditionally provided by the Born-Oppenheimer or adiabatic approximation. However, we also need to assign masses to the nuclei. There, the Born-Oppenheimer picture does not account for the inertia of the electrons and only bare nuclear masses are considered. Nowadays, experimental accuracy challenges the theoretical predictions of rotational and vibrational spectra and requires to include the participation of electrons in the internal motion of the molecule. More than 80 years after the original work of Born and Oppenheimer, this issue still is not solved in general. Here, we present a theoretical and numerical framework to address this problem in a general and rigorous way. Starting from the exact factorization of the electron-nuclear wave function, we include electronic effects beyond the Born-Oppenheimer regime in a perturbative way via position-dependent corrections to the bare nuclear masses. This maintains an adiabatic-like point of view: the nuclear degrees of freedom feel the presence of the electrons via a single potential energy surface, whereas the inertia of electrons is accounted for and the total mass of the system is recovered. This constitutes a general framework for describing the mass acquired by slow degrees of freedom due to the inertia of light, bounded particles. We illustrate it with a model of proton transfer, where the light particle is the proton, and with corrections to the vibrational spectra of molecules. Inclusion of the light particle inertia allows to gain orders of magnitude in accuracy.

physics.chem-ph↗

arXiv2015

Nuclear velocity perturbation theory for vibrational circular dichroism: An approach based on the exact factorization of the electron-nuclear wave function

The nuclear velocity perturbation theory (NVPT) for vibrational circular dichroism (VCD) is derived from the exact factorization of the electron-nuclear wave function. This new formalism offers an exact starting point to include correction terms to the Born-Oppenheimer (BO) form of the molecular wave function, similarly to the complete-adiabatic approximation. The corrections depend on a small parameter that, in a classical treatment of the nuclei, is identified as the nuclear velocity. Apart from proposing a rigorous basis for the NVPT, we show that the rotational strengths, related to the intensity of the VCD signal, contain a new contribution beyond-BO that can be evaluated with the NVPT and that only arises when the exact factorization approach is employed. Numerical results are presented for chiral and non-chiral systems to test the validity of the approach.

physics.chem-ph↗

arXiv2010

The isotope-effect in the phase transition of KDP: New insights from ab initio path-integral simulations

We investigate the quantum-mechanical localization of protonated and deterated isotopes in the symmetric low-barrier hydrogen-bonds of potassium dihydrogen phosphate (KDP) crystals in the paraelectric phase. The spatial density distributions of these hydrogen atoms are suspected to be responsible for the surprisingly large isotope effect observed for the ferroelectric phase transition in KDP. We employ ab initio path integral molecular dynamics simulations to obtain the nuclear real-space and momentum-space densities n(R) and n(k) of protons and deuterons, which are compared to experimental Neutron Compton Scattering data. Our results suggest a qualitative difference in the nature of the paraelectic phase in KDP between the two isotopes. We are able to discriminate between real quantum delocalization and vibration-assisted hopping and thus provide evidence for two distinct mechanisms of the ferroelectric phase transition in this class of materials.

cond-mat.mtrl-sci↗