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Daniel W. Paley

Publications and source records attributed to Daniel W. Paley.

3 recordsLinked to original sources

Learning Lattice Parameters from Powder X-Ray Diffraction Data Using Invariants

We present a machine learning (ML) method to determine unit cell parameters from powder X-Ray diffraction (XRD) data using a novel invariant lattice representation. In ML, the data representation used can have a substantial impact on the prediction quality. Previous approaches have directly predicted lattice parameters ($a,b,c,\alpha,\beta,\gamma$) from XRD inputs. However, these parameters depend strongly on the unit cell reduction or convention used. In this work, we construct an invariant representation of the reciprocal lattice that is independent of primitive cell convention, based on the bispectrum--a descriptor built from spherical harmonic projections of lattice points. The calculation of the lattice bispectrum is differentiable, and we demonstrate how to invert it using a dynamic programming approach. We show that when fixing ML model architecture, using the lattice bispectrum as the ML target rather than the unit cell parameters leads to more accurate lattice parameter predictions. For example, using the MP-20 dataset, the bispectrum reduces length mean absolute percentage error (MAPE) from 11.18% to 2.44% and angle MAPE from 12.74% to 3.07% compared to direct prediction with the same model architecture. We additionally benchmark our approach against pre-existing XRD to crystal structure models such as Crystalyze and assess its performance on the experimental RRUFF dataset. Beyond unit cell representation, we anticipate this invariant lattice representation could serve more broadly as a geometry-aware target for other crystallographic machine learning tasks such as structure generation.

physics.comp-ph

Real-Time XFEL Data Analysis at SLAC and NERSC: a Trial Run of Nascent Exascale Experimental Data Analysis

X-ray scattering experiments using Free Electron Lasers (XFELs) are a powerful tool to determine the molecular structure and function of unknown samples (such as COVID-19 viral proteins). XFEL experiments are a challenge to computing in two ways: i) due to the high cost of running XFELs, a fast turnaround time from data acquisition to data analysis is essential to make informed decisions on experimental protocols; ii) data collection rates are growing exponentially, requiring new scalable algorithms. Here we report our experiences analyzing data from two experiments at the Linac Coherent Light Source (LCLS) during September 2020. Raw data were analyzed on NERSC's Cori XC40 system, using the Superfacility paradigm: our workflow automatically moves raw data between LCLS and NERSC, where it is analyzed using the software package CCTBX. We achieved real time data analysis with a turnaround time from data acquisition to full molecular reconstruction in as little as 10 min -- sufficient time for the experiment's operators to make informed decisions. By hosting the data analysis on Cori, and by automating LCLS-NERSC interoperability, we achieved a data analysis rate which matches the data acquisition rate. Completing data analysis with 10 mins is a first for XFEL experiments and an important milestone if we are to keep up with data collection trends.

cs.DC

Interplay between organic cations and inorganic framework and incommensurability in hybrid lead-halide perovskite CH3NH3PbBr3

Organic-inorganic coupling in the hybrid lead-halide perovskite is a central issue in rationalizing the outstanding photovoltaic performance of these emerging materials. Here we compare and contrast the evolution of structure and dynamics of the hybrid CH3NH3PbBr3 and the inorganic CsPbBr3 lead-halide perovskites with temperature, using Raman spectroscopy and single-crystal X-ray diffraction. Results reveal a stark contrast between their order-disorder transitions, abrupt for the hybrid whereas smooth for the inorganic perovskite. X-ray diffraction observes an intermediate incommensurate phase between the ordered and the disordered phases in CH3NH3PbBr3. Low-frequency Raman scattering captures the appearance of a sharp soft mode in the incommensurate phase, ascribed to the theoretically predicted amplitudon mode. Our work highlights the interaction between the structural dynamics of organic cation CH3NH3+ and the lead-halide framework, and unravels the competition between tendencies of the organic and inorganic moieties to minimize energy in the incommensurate phase of the hybrid perovskite structure.

cond-mat.mtrl-sci