SearcharxivSearch

arXiv subjects

Daniele Coslovich

Publications and source records attributed to Daniele Coslovich.

At least 19 recordsLinked to original sources

The limits of interpretability in multiple linear regression

Interpreting machine-learning models has attracted increasing attention, particularly in the physical sciences, where one often seeks to understand the underlying mechanisms rather than merely make predictions. Multiple linear regression is often regarded as an interpretable alternative to more complex models, such as deep neural networks, because its predictions are expressed as explicit weighted sums of input features. However, when input features are strongly correlated, namely in the presence of multicollinearity, the learned weights can exhibit large dataset-to-dataset fluctuations and oscillatory behavior across physically similar features, making their interpretation difficult or even impossible. Although the instability of the weights under multicollinearity is well known in statistics, its consequences for physical interpretation, in particular its connection to oscillatory weights across physically similar features, have not been systematically clarified. Here, we theoretically discuss the mechanism behind this loss of interpretability by analyzing the eigenmodes of the feature correlation matrix. We show that small-eigenvalue modes associated with multicollinearity amplify fluctuations in the weights and generate oscillatory patterns that do not necessarily reflect meaningful contributions. We test this theoretical picture numerically on physics datasets and show that Ridge regularization suppresses these unstable modes, although the resulting weights must still be interpreted with caution. We further confirm the generality of our findings beyond physics by analyzing a diverse collection of publicly available datasets. Our results clarify why, in the presence of multicollinearity, physical interpretation can remain difficult even for linear regression models.

cond-mat.dis-nn

Interpretability of linear regression models of glassy dynamics

Data-driven models can accurately describe and predict the dynamical properties of glass-forming liquids from structural data. Accurate predictions, however, do not guarantee an understanding of the underlying physical phenomena and the key factors that control them. In this paper, we illustrate the merits and limitations of linear regression models of glassy dynamics built on high-dimensional structural descriptors. By analyzing data for a two-dimensional glass model, we show that several descriptors commonly used in glass-transition studies display multicollinearity, which hinders the interpretability of linear models. Ridge regression suppresses some of the shortcomings of multicollinearity, but its solutions are not concise enough to be physically interpretable. Only by using dimensional reduction techniques we do eventually obtain linear models that strike a balance between prediction accuracy and interpretability. Our analysis points to a key role of local packing and composition fluctuations in the glass model under study.

cond-mat.stat-mech

Freezing, melting and the onset of glassiness in binary mixtures

We clarify the relationship between freezing, melting, and the onset of glassy dynamics in a prototypical glass-forming mixture model. Our starting point is a precise operational definition of the onset of glassiness, as expressed by the emergence of inflections in time-dependent correlation functions. By scanning the temperature-composition phase diagram of the mixture, we find a disconnect between the onset of glassiness and freezing. Surprisingly, however, the onset temperature closely tracks the melting line, along which the excess entropy is approximately constant. At fixed composition, all characteristic temperatures display nonetheless similar pressure dependencies, which are very well predicted by the isomorph theory. While our results rule out a general connection between thermodynamic metastability and glassiness, they call for a reassessment of the role of crystalline precursors in glass-forming liquids.

cond-mat.soft

Glassy dynamics and crystalline local order in two-dimensional amorphous silica

We reassess the modeling of amorphous silica bilayers as a two-dimensional classical system whose particles interact with an effective pairwise potential. We show that it is possible to reparameterize the potential developed by Roy, Heyde, and Heuer to quantitatively match the structural details of the experimental samples. We then study the glassy dynamics of the reparameterized model at low temperatures. Using appropriate cage-relative correlation functions, which suppress the effect of Mermin-Wagner fluctuations, we highlight the presence of two well-defined Arrhenius regimes separated by a narrow crossover region, which we connect to the thermodynamic anomalies and the changes in the local structure. We find that the bond-orientational order grows steadily below the crossover temperature and is associated to transient crystalline domains of nanometric size. These findings raise fundamental questions about the nature of glass structure in two dimensions and provide guidelines to interpret the experimental data.

cond-mat.stat-mech

Roadmap on machine learning glassy dynamics

Unraveling the connections between microscopic structure, emergent physical properties, and slow dynamics has long been a challenge when studying the glass transition. The absence of clear visible structural order in amorphous configurations complicates the identification of the key physical mechanisms underpinning slow dynamics. The difficulty in sampling equilibrated configurations at low temperatures hampers thorough numerical and theoretical investigations. This perspective article explores the potential of machine learning (ML) techniques to face these challenges, building on the algorithms that have revolutionized computer vision and image recognition. We present recent successful ML applications, as well as many open problems for the future, such as transferability and interpretability of ML approaches. We highlight new ideas and directions in which ML could provide breakthroughs to better understand the fundamental mechanisms at play in glass-forming liquids. To foster a collaborative community effort, this article also introduces the ``GlassBench" dataset, providing simulation data and benchmarks for both two-dimensional and three-dimensional glass-formers. We propose critical metrics to compare the performance of emerging ML methodologies, in line with benchmarking practices in image and text recognition. The goal of this roadmap is to provide guidelines for the development of ML techniques in systems displaying slow dynamics, while inspiring new directions to improve our theoretical understanding of glassy liquids.

cond-mat.soft

Policy-guided Monte Carlo on general state spaces: Application to glass-forming mixtures

Policy-guided Monte Carlo is an adaptive method to simulate classical interacting systems. It adjusts the proposal distribution of the Metropolis-Hastings algorithm to maximize the sampling efficiency, using a formalism inspired by reinforcement learning. In this work, we first extend the policy-guided method to deal with a general state space, comprising, for instance, both discrete and continuous degrees of freedom, and then apply it to a few paradigmatic models of glass-forming mixtures. We assess the efficiency of a set of physically inspired moves whose proposal distributions are optimized through on-policy learning. Compared to conventional Monte Carlo methods, the optimized proposals are two orders of magnitude faster for an additive soft sphere mixture but yield a much more limited speed-up for the well-studied Kob-Andersen model. We discuss the current limitations of the method and suggest possible ways to improve it.

cond-mat.soft

Dimensionality reduction of local structure in glassy binary mixtures

We consider unsupervised learning methods for characterizing the disordered microscopic structure of supercooled liquids and glasses. Specifically, we perform dimensionality reduction of smooth structural descriptors that describe radial and bond-orientational correlations, and assess the ability of the method to grasp the essential structural features of glassy binary mixtures. In several cases, a few collective variables account for the bulk of the structural fluctuations within the first coordination shell and also display a clear connection with the fluctuations of particle mobility. Fine-grained descriptors that characterize the radial dependence of bond-orientational order better capture the structural fluctuations relevant for particle mobility, but are also more difficult to parametrize and to interpret. We also find that principal component analysis of bond-orientational order parameters provides identical results to neural network autoencoders, while having the advantage of being easily interpretable. Overall, our results indicate that glassy binary mixtures have a broad spectrum of structural features. In the temperature range we investigate, some mixtures display well-defined locally favored structures, which are reflected in bimodal distributions of the structural variables identified by dimensionality reduction.

cond-mat.stat-mech

Revisiting the single-saddle model for the $β$-relaxation of supercooled liquids

The dynamics of glass-forming liquids display several outstanding features, such as two-step relaxation and dynamic heterogeneities, which are difficult to predict quantitatively from first principles. In this work, we revisit a simple theoretical model of the $β$-relaxation, i.e., the first step of the relaxation dynamics. The model, first introduced by Cavagna et al., describes the dynamics of the system in the neighborhood of a saddle point of the potential energy surface. We extend the model to account for density-density correlation functions and for the 4-point dynamic susceptibility. We obtain analytical results for a simple schematic model, making contact with related results for p-spin models and with the predictions of inhomogeneous mode-coupling theory. Building on recent computational advances, we also explicitly compare the model predictions against overdamped Langevin dynamics simulations of a glass-forming liquid close to the mode-coupling crossover. The agreement is quantitative at the level of single-particle dynamic properties only up to the early $β$-regime. Due to its inherent harmonic approximation, however, the model is unable to predict the dynamics on the time scale relevant for structural relaxation. Nonetheless, our analysis suggests that the agreement with the simulations may be largely improved if the modes' spatial localization is properly taken into account.

cond-mat.stat-mech

partycls: A Python package for structural clustering

partycls is a Python framework for cluster analysis of systems of interacting particles. By grouping particles that share similar structural or dynamical properties, partycls enables rapid and unsupervised exploration of the system's relevant features. It provides descriptors suitable for applications in condensed matter physics and integrates the necessary tools of unsupervised learning, such as dimensionality reduction, into a streamlined workflow. Through a simple and expressive interface, partycls allows one to open a trajectory file, perform a clustering based on the selected structural descriptor, and analyze and save the results with only a few lines of code.

physics.comp-ph

Spatial structure of unstable normal modes in a glass-forming liquid

The phenomenology of glass-forming liquids is often described in terms of their underlying, high-dimensional potential energy surface. In particular, the statistics of stationary points sampled as a function of temperature provides useful insight into the thermodynamics and dynamics of the system. To make contact with the real space physics, however, analysis of the spatial structure of the normal modes is required. In this work, we numerically study the potential energy surface of a glass-forming ternary mixture. Starting from liquid configurations equilibrated over a broad range of temperatures using a swap Monte Carlo method, we locate the nearby stationary points and investigate the spatial architecture and the energetics of the associated unstable modes. Through this spatially-resolved analysis, originally developed to study local minima, we corroborate recent evidence that the nature of the unstable modes changes from delocalized to localized around the mode-coupling temperature. We find that the displacement amplitudes of the delocalized modes have a slowly decaying far field, whereas the localized modes consist of a core with large displacements and a rapidly decaying far field. The fractal dimension of unstable modes around the mobility edge is equal to 1, consistent with the scaling of the participation ratio. Finally, we find that around and below the mode-coupling temperature the unstable modes are localized around structural defects, characterized by a disordered local structure markedly different from the liquid's locally favored structure. These defects are similar to those associated to quasi-localized vibrations in local minima and are good candidates to predict the emergence of localized excitations at low temperature.

cond-mat.stat-mech

Assessing the structural heterogeneity of supercooled liquids through community inference

We present an information-theoretic approach inspired by distributional clustering to assess the structural heterogeneity of particulate systems. Our method identifies communities of particles that share a similar local structure by harvesting the information hidden in the spatial variation of two- or three-body static correlations. This corresponds to an unsupervised machine learning approach that infers communities solely from the particle positions and their species. We apply this method to three models of supercooled liquids and find that it detects subtle forms of local order, as demonstrated by a comparison with the statistics of Voronoi cells. Finally, we analyze the time-dependent correlation between structural communities and particle mobility and show that our method captures relevant information about glassy dynamics.

cond-mat.stat-mech

A localization transition underlies the mode-coupling crossover of glasses

We study the equilibrium statistical properties of the potential energy landscape of several glass models in a temperature regime so far inaccessible to computer simulations. We show that unstable modes of the stationary points undergo a localization transition in real space close to the mode-coupling crossover temperature determined from the dynamics. The concentration of localized unstable modes found at low temperature is a non-universal, finite dimensional feature not captured by mean-field glass theory. Our analysis reconciles, and considerably expands, previous conflicting numerical results and provides a characteristic temperature for glassy dynamics that unambiguously locates the mode-coupling crossover.

cond-mat.stat-mech

Dynamic and thermodynamic crossover scenarios in the Kob-Andersen mixture: Insights from multi-CPU and multi-GPU simulations

The physical behavior of glass-forming liquids presents complex features of both dynamic and thermodynamic nature. Some studies indicate the presence of thermodynamic anomalies and of crossovers in the dynamic properties, but their origin and degree of universality is difficult to assess. Moreover, conventional simulations are barely able to cover the range of temperatures at which these crossovers usually occur. To address these issues, we simulate the Kob-Andersen Lennard-Jones mixture using efficient protocols based on multi-CPU and multi-GPU parallel tempering. Our setup enables us to probe the thermodynamics and dynamics of the liquid at equilibrium well below the critical temperature of mode-coupling theory, $T_{\rm MCT} = 0.435$. We find that below $T=0.4$ the analysis is hampered by partial crystallization of the metastable liquid, which nucleates extended regions populated by large particles arranged in an fcc structure. By filtering out crystalline samples, we reveal that the specific heat grows in a regular manner down to $T=0.38$. Possible thermodynamic anomalies suggested by previous studies can thus occur only in a region of the phase diagram where the system is highly metastable. Using the equilibrium configurations obtained from the parallel tempering simulations, we perform molecular dynamics and Monte Carlo simulations to probe the equilibrium dynamics down to $T=0.4$. A temperature-derivative analysis of the relaxation time and diffusion data allows us to assess different dynamic scenarios around $T_{\rm MCT}$. Hints of a dynamic crossover come from analysis of the four-point dynamic susceptibility. Finally, we discuss possible future numerical strategies to clarify the nature of crossover phenomena in glass-forming liquids.

cond-mat.stat-mech

Local order and crystallization of dense polydisperse hard spheres

Computer simulations give precious insight into the microscopic behavior of supercooled liquids and glasses, but their typical time scales are orders of magnitude shorter than the experimentally relevant ones. We recently closed this gap for a class of models of size polydisperse fluids, which we successfully equilibrate beyond laboratory time scales by means of the swap Monte Carlo algorithm. In this contribution, we study the interplay between compositional and geometric local orders in a model of polydisperse hard spheres equilibrated with this algorithm. Local compositional order has a weak state dependence, while local geometric order associated to icosahedral arrangements grows more markedly but only at very high density. We quantify the correlation lengths and the degree of sphericity associated to icosahedral structures and compare these results to those for the Wahnström Lennard-Jones mixture. Finally, we analyze the structure of very dense samples that partially crystallized following a pattern incompatible with conventional fractionation scenarios. The crystal structure has the symmetry of aluminum diboride and involves a subset of small and large particles with size ratio approximately equal to 0.5.

cond-mat.stat-mech

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling

Liquids relax extremely slowly upon approaching the glass state. One explanation is that an entropy crisis, due to the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally-relevant timescales. In this work we not only close the colossal gap between experiments and simulations but manage to create in-silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the new observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

cond-mat.stat-mech

Exploring the jamming transition over a wide range of critical densities

We numerically study the jamming transition of frictionless polydisperse spheres in three dimensions. We use an efficient thermalisation algorithm for the equilibrium hard sphere fluid and generate amorphous jammed packings over a range of critical jamming densities that is about three times broader than in previous studies. This allows us to reexamine a wide range of structural properties characterizing the jamming transition. Both isostaticity and the critical behavior of the pair correlation function hold over the entire range of jamming densities. At intermediate length scales, we find a weak, smooth increase of bond orientational order. By contrast, distorted icosahedral structures grow rapidly with increasing the volume fraction in both fluid and jammed states. Surprisingly, at large scale we observe that denser jammed states show stronger deviations from hyperuniformity, suggesting that the enhanced amorphous ordering inherited from the equilibrium fluid competes with, rather than enhances, hyperuniformity. Finally, finite size fluctuations of the critical jamming density are considerably suppressed in the denser jammed states, indicating an important change in the topography of the potential energy landscape. By considerably stretching the amplitude of the critical "J-line", our work disentangles physical properties at the contact scale that are associated with jamming criticality, from those occurring at larger length scales, which have a different nature.

cond-mat.stat-mech

Models and algorithms for the next generation of glass transition studies

Successful computer studies of glass-forming materials need to overcome both the natural tendency to structural ordering and the dramatic increase of relaxation times at low temperatures. We present a comprehensive analysis of eleven glass-forming models to demonstrate that both challenges can be efficiently tackled using carefully designed models of size polydisperse supercooled liquids together with an efficient Monte Carlo algorithm where translational particle displacements are complemented by swaps of particle pairs. We study a broad range of size polydispersities, using both discrete and continuous mixtures, and we systematically investigate the role of particle softness, attractivity and non-additivity of the interactions. Each system is characterized by its robustness against structural ordering and by the efficiency of the swap Monte Carlo algorithm. We show that the combined optimisation of the potential's softness, polydispersity and non-additivity leads to novel computer models with excellent glass-forming ability. For such models, we achieve over ten orders of magnitude gain in the equilibration timescale using the swap Monte Carlo algorithm, thus paving the way to computational studies of static and thermodynamic properties under experimental conditions. In addition, we provide microscopic insights into the performance of the swap algorithm which should help optimizing models and algorithms even further.

cond-mat.stat-mech

Structure of inactive states of a binary Lennard-Jones mixture

We study the structure of inactive states in a prototypical model glass, the Kob-Andersen binary Lennard-Jones mixture. These inactive states are obtained by transition path sampling and are at dynamical phase coexistence with an active equilibrium state. Configurations in the inactive states are kinetically stable and are located in deeper basins of the energy landscape than their active counterparts. By analyzing trajectory-to-trajectory fluctuations within the inactive state, we assess correlations between kinetic stability, energy and other structural properties. We show that measures of local order associated to stable local packings and bond-orientational order are weakly correlated with energy and kinetic stability. We discuss what kinds of structural measurement might capture the relevant dynamical features of the inactive state.

cond-mat.stat-mech