arXiv subjects

Daniele Panozzo

Publications and source records attributed to Daniele Panozzo.

At least 37 records · Page 2Linked to original sources

arXiv2022

Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw

Developing computational models of the human jaw acquired from cone-beam computed tomography (CBCT) scans is time-consuming and labor-intensive. Besides, a quantitative comparison is not attainable in the literature due to the involved manual tasks and the lack of surface/volumetric meshes. We share an open-access repository of 17 patient-specific finite-element (FE) models of human jaws acquired from CBCT scans and the utilized pipeline for generating them. The proposed pipeline minimizes model generation time and potential errors caused by human interventions. It gets dense surface meshes and provides reduced conformal surface/volumetric meshes suitable for FE analysis. We have quantified the geometrical variations of developed models and assessed models' accuracy from different aspects; (1) the maximum deviations from the input meshes, (2) the mesh quality, and (3) the simulation results. Our results indicate that the developed computational models are precise and have quality meshes suitable for various FE scenarios. Therefore, we believe this dataset will pave the way for future population studies.

physics.med-ph↗

arXiv2022

DEF: Deep Estimation of Sharp Geometric Features in 3D Shapes

We propose Deep Estimators of Features (DEFs), a learning-based framework for predicting sharp geometric features in sampled 3D shapes. Differently from existing data-driven methods, which reduce this problem to feature classification, we propose to regress a scalar field representing the distance from point samples to the closest feature line on local patches. Our approach is the first that scales to massive point clouds by fusing distance-to-feature estimates obtained on individual patches. We extensively evaluate our approach against related state-of-the-art methods on newly proposed synthetic and real-world 3D CAD model benchmarks. Our approach not only outperforms these (with improvements in Recall and False Positives Rates), but generalizes to real-world scans after training our model on synthetic data and fine-tuning it on a small dataset of scanned data. We demonstrate a downstream application, where we reconstruct an explicit representation of straight and curved sharp feature lines from range scan data.

cs.CV↗

arXiv2022

Sparsity-Specific Code Optimization using Expression Trees

We introduce a code generator that converts unoptimized C++ code operating on sparse data into vectorized and parallel CPU or GPU kernels. Our approach unrolls the computation into a massive expression graph, performs redundant expression elimination, grouping, and then generates an architecture-specific kernel to solve the same problem, assuming that the sparsity pattern is fixed, which is a common scenario in many applications in computer graphics and scientific computing. We show that our approach scales to large problems and can achieve speedups of two orders of magnitude on CPUs and three orders of magnitude on GPUs, compared to a set of manually optimized CPU baselines. To demonstrate the practical applicability of our approach, we employ it to optimize popular algorithms with applications to physical simulation and interactive mesh deformation.

cs.PL↗

arXiv2022

A Large-Scale Comparison of Tetrahedral and Hexahedral Elements for Solving Elliptic PDEs with the Finite Element Method

The Finite Element Method (FEM) is widely used to solve discrete Partial Differential Equations (PDEs) in engineering and graphics applications. The popularity of FEM led to the development of a large family of variants, most of which require a tetrahedral or hexahedral mesh to construct the basis. While the theoretical properties of FEM basis (such as convergence rate, stability, etc.) are well understood under specific assumptions on the mesh quality, their practical performance, influenced both by the choice of the basis construction and quality of mesh generation, have not been systematically documented for large collections of automatically meshed 3D geometries. We introduce a set of benchmark problems involving most commonly solved elliptic PDEs, starting from simple cases with an analytical solution, moving to commonly used test problem setups, and using manufactured solutions for thousands of real-world, automatically meshed geometries. For all these cases, we use state-of-the-art meshing tools to create both tetrahedral and hexahedral meshes, and compare the performance of different element types for common elliptic PDEs. The goal of his benchmark is to enable comparison of complete FEM pipelines, from mesh generation to algebraic solver, and exploration of relative impact of different factors on the overall system performance.

math.NA↗

arXiv2021

A Large-Scale Benchmark for the Incompressible Navier-Stokes Equations

We introduce a collection of benchmark problems in 2D and 3D (geometry description and boundary conditions), including simple cases with known analytic solution, classical experimental setups, and complex geometries with fabricated solutions for evaluation of numerical schemes for incompressible Navier-Stokes equations in laminar flow regime. We compare the performance of a representative selection of most broadly used algorithms for Navier-Stokes equations on this set of problems. Where applicable, we compare the most common spatial discretization choices (unstructured triangle/tetrahedral meshes and structured or semi-structured quadrilateral/hexahedral meshes). The study shows that while the type of spatial discretization used has a minor impact on the accuracy of the solutions, the choice of time integration method, spatial discretization order, and the choice of solving the coupled equations or reducing them to simpler subproblems have very different properties. Methods that are directly solving the original equations tend to be more accurate than splitting approaches for the same number of degrees of freedom, but numerical or computational difficulty arise when they are scaled to larger problem sizes. Low-order splitting methods are less accurate, but scale more easily to large problems, while higher-order splitting methods are accurate but require dense time discretizations to be stable. We release the description of the experiments and an implementation of our benchmark, which we believe will enable statistically significant comparisons with the state of the art as new approaches for solving the incompressible Navier-Stokes equations are introduced.

cs.CE↗

arXiv2021

A Cross-Platform Benchmark for Interval Computation Libraries

Interval computation is widely used to certify computations that use floating point operations to avoid pitfalls related to rounding error introduced by inaccurate operations. Despite its popularity and practical benefits, support for interval arithmetic is not standardized nor available in mainstream programming languages. We propose the first benchmark for interval computations, coupled with reference solutions computed with exact arithmetic, and compare popular C and C++ libraries over different architectures, operating systems, and compilers. The benchmark allows identifying limitations in existing implementations, and provides a reliable guide on which library to use on each system. We believe that our benchmark will be useful for developers of future interval libraries, as a way to test the correctness and performance of their algorithms.

cs.MS↗

arXiv2021

A Large Scale Benchmark and an Inclusion-Based Algorithm for Continuous Collision Detection

We introduce a large scale benchmark for continuous collision detection (CCD) algorithms, composed of queries manually constructed to highlight challenging degenerate cases and automatically generated using existing simulators to cover common cases. We use the benchmark to evaluate the accuracy, correctness, and efficiency of state-of-the-art continuous collision detection algorithms, both with and without minimal separation. We discover that, despite the widespread use of CCD algorithms, existing algorithms are either: (1) correct but impractically slow, (2) efficient but incorrect, introducing false negatives which will lead to interpenetration, or (3) correct but over conservative, reporting a large number of false positives which might lead to inaccuracies when integrated in a simulator. By combining the seminal interval root finding algorithm introduced by Snyder in 1992 with modern predicate design techniques, we propose a simple and efficient CCD algorithm. This algorithm is competitive with state of the art methods in terms of runtime while conservatively reporting the time of impact and allowing explicit trade off between runtime efficiency and number of false positives reported.

cs.GR↗

arXiv2021

An Extensible Benchmark Suite for Learning to Simulate Physical Systems

Simulating physical systems is a core component of scientific computing, encompassing a wide range of physical domains and applications. Recently, there has been a surge in data-driven methods to complement traditional numerical simulations methods, motivated by the opportunity to reduce computational costs and/or learn new physical models leveraging access to large collections of data. However, the diversity of problem settings and applications has led to a plethora of approaches, each one evaluated on a different setup and with different evaluation metrics. We introduce a set of benchmark problems to take a step towards unified benchmarks and evaluation protocols. We propose four representative physical systems, as well as a collection of both widely used classical time integrators and representative data-driven methods (kernel-based, MLP, CNN, nearest neighbors). Our framework allows evaluating objectively and systematically the stability, accuracy, and computational efficiency of data-driven methods. Additionally, it is configurable to permit adjustments for accommodating other learning tasks and for establishing a foundation for future developments in machine learning for scientific computing.

cs.LG↗

arXiv2021

Robust & Asymptotically Locally Optimal UAV-Trajectory Generation Based on Spline Subdivision

Generating locally optimal UAV-trajectories is challenging due to the non-convex constraints of collision avoidance and actuation limits. We present the first local, optimization-based UAV-trajectory generator that simultaneously guarantees the validity and asymptotic optimality for known environments. \textit{Validity:} Given a feasible initial guess, our algorithm guarantees the satisfaction of all constraints throughout the process of optimization. \textit{Asymptotic Optimality:} We use an asymptotic exact piecewise approximation of the trajectory with an automatically adjustable resolution of its discretization. The trajectory converges under refinement to the first-order stationary point of the exact non-convex programming problem. Our method has additional practical advantages including joint optimality in terms of trajectory and time-allocation, and robustness to challenging environments as demonstrated in our experiments.

cs.RO↗

arXiv2021

Orienting Point Clouds with Dipole Propagation

Establishing a consistent normal orientation for point clouds is a notoriously difficult problem in geometry processing, requiring attention to both local and global shape characteristics. The normal direction of a point is a function of the local surface neighborhood; yet, point clouds do not disclose the full underlying surface structure. Even assuming known geodesic proximity, calculating a consistent normal orientation requires the global context. In this work, we introduce a novel approach for establishing a globally consistent normal orientation for point clouds. Our solution separates the local and global components into two different sub-problems. In the local phase, we train a neural network to learn a coherent normal direction per patch (i.e., consistently oriented normals within a single patch). In the global phase, we propagate the orientation across all coherent patches using a dipole propagation. Our dipole propagation decides to orient each patch using the electric field defined by all previously orientated patches. This gives rise to a global propagation that is stable, as well as being robust to nearby surfaces, holes, sharp features and noise.

cs.GR↗

arXiv2021

Efficient and Robust Discrete Conformal Equivalence with Boundary

We describe an efficient algorithm to compute a conformally equivalent metric for a discrete surface, possibly with boundary, exhibiting prescribed Gaussian curvature at all interior vertices and prescribed geodesic curvature along the boundary. Our construction is based on the theory developed in [Gu et al. 2018; Springborn 2020], and in particular relies on results on hyperbolic Delaunay triangulations. Generality is achieved by considering the surface's intrinsic triangulation as a degree of freedom, and particular attention is paid to the proper treatment of surface boundaries. While via a double cover approach the boundary case can be reduced to the closed case quite naturally, the implied symmetry of the setting causes additional challenges related to stable Delaunay-critical configurations that we address explicitly in this work.

cs.CG↗

arXiv2020

ACORNS: An Easy-To-Use Code Generator for Gradients and Hessians

The computation of first and second-order derivatives is a staple in many computing applications, ranging from machine learning to scientific computing. We propose an algorithm to automatically differentiate algorithms written in a subset of C99 code and its efficient implementation as a Python script. We demonstrate that our algorithm enables automatic, reliable, and efficient differentiation of common algorithms used in physical simulation and geometry processing.

cs.MS↗

arXiv2020

Unwind: Interactive Fish Straightening

The ScanAllFish project is a large-scale effort to scan all the world's 33,100 known species of fishes. It has already generated thousands of volumetric CT scans of fish species which are available on open access platforms such as the Open Science Framework. To achieve a scanning rate required for a project of this magnitude, many specimens are grouped together into a single tube and scanned all at once. The resulting data contain many fish which are often bent and twisted to fit into the scanner. Our system, Unwind, is a novel interactive visualization and processing tool which extracts, unbends, and untwists volumetric images of fish with minimal user interaction. Our approach enables scientists to interactively unwarp these volumes to remove the undesired torque and bending using a piecewise-linear skeleton extracted by averaging isosurfaces of a harmonic function connecting the head and tail of each fish. The result is a volumetric dataset of a individual, straight fish in a canonical pose defined by the marine biologist expert user. We have developed Unwind in collaboration with a team of marine biologists: Our system has been deployed in their labs, and is presently being used for dataset construction, biomechanical analysis, and the generation of figures for scientific publication.

cs.GR↗

arXiv2020

Fast Tetrahedral Meshing in the Wild

We propose a new tetrahedral meshing method, fTetWild, to convert triangle soups into high-quality tetrahedral meshes. Our method builds on the TetWild algorithm, replacing the rational triangle insertion with a new incremental approach to construct and optimize the output mesh, interleaving triangle insertion and mesh optimization. Our approach makes it possible to maintain a valid floating-point tetrahedral mesh at all algorithmic stages, eliminating the need for costly constructions with rational numbers used by TetWild, while maintaining full robustness and similar output quality. This allows us to improve on TetWild in two ways. First, our algorithm is significantly faster, with running time comparable to less robust Delaunay-based tetrahedralization algorithms. Second, our algorithm is guaranteed to produce a valid tetrahedral mesh with floating-point vertex coordinates, while TetWild produces a valid mesh with rational coordinates which is not guaranteed to be valid after floating-point conversion. As a trade-off, our algorithm no longer guarantees that all input triangles are present in the output mesh, but in practice, as confirmed by our tests on the Thingi10k dataset, the algorithm always succeeds in inserting all input triangles.

cs.GR↗

arXiv2019

VoronoiNet: General Functional Approximators with Local Support

Voronoi diagrams are highly compact representations that are used in various Graphics applications. In this work, we show how to embed a differentiable version of it -- via a novel deep architecture -- into a generative deep network. By doing so, we achieve a highly compact latent embedding that is able to provide much more detailed reconstructions, both in 2D and 3D, for various shapes. In this tech report, we introduce our representation and present a set of preliminary results comparing it with recently proposed implicit occupancy networks.

cs.CV↗

arXiv2019

Dynamic Drawing Guidance via Electromagnetic Haptic Feedback

We propose a system to deliver dynamic guidance in drawing, sketching and handwriting tasks via an electromagnet moving underneath a high refresh rate pressure sensitive tablet. The system allows the user to move the pen at their own pace and style and does not take away control. The system continously and iteratively measures the pen motion and adjusts magnet position and power according to the user input in real-time via a receding horizon optimal control formulation. The optimization is based on a novel approximate electromagnet model that is fast enough for use in real-time methods, yet provides very good fit to experimental data. Using a closed-loop time-free approach allows for error-correcting behavior, gently pulling the user back to the desired trajectory rather than pushing or pulling the pen to a continuously advancing setpoint. Our experimental results show that the system can control the pen position with a very low dispersion of 2.8mm (+/-0.8mm). An initial user study indicates that it significantly increases accuracy of users drawing a variety of shapes and that this improvement increases with complexity of the shape.

cs.HC↗

arXiv2019

Gradient Dynamics of Shallow Univariate ReLU Networks

We present a theoretical and empirical study of the gradient dynamics of overparameterized shallow ReLU networks with one-dimensional input, solving least-squares interpolation. We show that the gradient dynamics of such networks are determined by the gradient flow in a non-redundant parameterization of the network function. We examine the principal qualitative features of this gradient flow. In particular, we determine conditions for two learning regimes:kernel and adaptive, which depend both on the relative magnitude of initialization of weights in different layers and the asymptotic behavior of initialization coefficients in the limit of large network widths. We show that learning in the kernel regime yields smooth interpolants, minimizing curvature, and reduces to cubic splines for uniform initializations. Learning in the adaptive regime favors instead linear splines, where knots cluster adaptively at the sample points.

cs.LG↗

arXiv2019

ABC: A Big CAD Model Dataset For Geometric Deep Learning

We introduce ABC-Dataset, a collection of one million Computer-Aided Design (CAD) models for research of geometric deep learning methods and applications. Each model is a collection of explicitly parametrized curves and surfaces, providing ground truth for differential quantities, patch segmentation, geometric feature detection, and shape reconstruction. Sampling the parametric descriptions of surfaces and curves allows generating data in different formats and resolutions, enabling fair comparisons for a wide range of geometric learning algorithms. As a use case for our dataset, we perform a large-scale benchmark for estimation of surface normals, comparing existing data driven methods and evaluating their performance against both the ground truth and traditional normal estimation methods.

cs.GR↗