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Danilo A. Sarti

Publications and source records attributed to Danilo A. Sarti.

3 recordsLinked to original sources

Factorial Multivariate Bayesian Causal Forests: heterogeneous main and interaction effects of multiple treatments on correlated outcomes

Many studies expose units to several binary treatments at once and record several correlated outcomes, yet analysts usually estimate one treatment's average effect on one outcome at a time -- discarding how treatments interact and how their effects vary across units. We introduce the factorial multivariate Bayesian causal forest, a Bayesian nonparametric model that decomposes the factorial response surface over the treatment lattice into a prognostic sum-of-trees plus one sum-of-trees per main or interaction effect, each with correlated multivariate leaf parameters, estimated jointly with coherent uncertainty. A single indicator-weighted kernel samples every component -- the prognostic term is the special case whose indicator is unity -- so the two-treatment model, the single-treatment multivariate causal forest, and a general order-r truncation are one and the same sampler. We give the ANOVA/Möbius identification of each estimand, an efficient Rcpp engine, and an interpretability layer using value-suppressing uncertainty maps. In simulations the average-effect estimators are unbiased with nominal coverage, consistent, and robust under misspecification, failing only under unmeasured confounding, which we flag. We illustrate the method on clinical, agricultural and economic data and on a deeper application to the NHANES survey. Software is provided as an R package.

stat.ME↗

Bayesian Additive Main Effects and Multiplicative Interaction Models using Tensor Regression for Multi-environmental Trials

We propose a Bayesian tensor regression model to accommodate the effect of multiple factors on phenotype prediction. We adopt a set of prior distributions that resolve identifiability issues that may arise between the parameters in the model. Further, we incorporate a spike-and-slab structure that identifies which interactions are relevant for inclusion in the linear predictor, even when they form a subset of the available variables. Simulation experiments show that our method outperforms previous related models and machine learning algorithms under different sample sizes and degrees of complexity. We further explore the applicability of our model by analysing real-world data related to wheat production across Ireland from 2010 to 2019. Our model performs competitively and overcomes key limitations found in other analogous approaches. Finally, we adapt a set of visualisations for the posterior distribution of the tensor effects that facilitate the identification of optimal interactions between the tensor variables, whilst accounting for the uncertainty in the posterior distribution.

stat.ML↗

Variational Inference for Additive Main and Multiplicative Interaction Effects Models

In plant breeding the presence of a genotype by environment (GxE) interaction has a strong impact on cultivation decision making and the introduction of new crop cultivars. The combination of linear and bilinear terms has been shown to be very useful in modelling this type of data. A widely-used approach to identify GxE is the Additive Main Effects and Multiplicative Interaction Effects (AMMI) model. However, as data frequently can be high-dimensional, Markov chain Monte Carlo (MCMC) approaches can be computationally infeasible. In this article, we consider a variational inference approach for such a model. We derive variational approximations for estimating the parameters and we compare the approximations to MCMC using both simulated and real data. The new inferential framework we propose is on average two times faster whilst maintaining the same predictive performance as MCMC.

stat.ML↗