arXiv subjects

Dante R. Chialvo

Publications and source records attributed to Dante R. Chialvo.

At least 37 records · Page 2Linked to original sources

arXiv2020

From synaptic interactions to collective dynamics in random neuronal networks models: critical role of eigenvectors and transient behavior

The study of neuronal interactions is currently at the center of several big collaborative neuroscience projects (including the Human Connectome Project, the Blue Brain Project, the Brainome, etc.) which attempt to obtain a detailed map of the entire brain. Under certain constraints, mathematical theory can advance predictions of the expected neural dynamics based solely on the statistical properties of the synaptic interaction matrix. This work explores the application of free random variables to the study of large synaptic interaction matrices. Besides recovering in a straightforward way known results on eigenspectra in types of models of neural networks proposed by Rajan and Abbott, we extend them to heavy-tailed distributions of interactions. More importantly, we derive analytically the behavior of eigenvector overlaps, which determine the stability of the spectra. We observe that upon imposing the neuronal excitation/inhibition balance, despite the eigenvalues remaining unchanged, their stability dramatically decreases due to the strong non-orthogonality of associated eigenvectors. It leads us to the conclusion that the understanding of the temporal evolution of asymmetric neural networks requires considering the entangled dynamics of both eigenvectors and eigenvalues, which might bear consequences for learning and memory processes in these models. Considering the success of free random variables theory in a wide variety of disciplines, we hope that the results presented here foster the additional application of these ideas in the area of brain sciences.

q-bio.NC↗

arXiv2020

Revisiting non-linear functional brain co-activations: directed, dynamic and delayed

The center stage of neuro-imaging is currently occupied by studies of functional correlations between brain regions. These correlations define the brain functional networks, which are the most frequently used framework to represent and interpret a variety of experimental findings. In previous work we first demonstrated that the relatively stronger BOLD activations contain most of the information relevant to understand functional connectivity and subsequent work confirmed that a large compression of the original signals can be obtained without significant loss of information. In this work we revisit the correlation properties of these epochs to define a measure of nonlinear dynamic directed functional connectivity (nldFC) across regions of interest. We show that the proposed metric provides at once, without extensive numerical complications, directed information of the functional correlations, as well as a measure of temporal lags across regions, overall offering a different perspective in the analysis of brain co-activation patterns. In this paper we provide for a proof of concept, based on replicating and completing existing results on an Autism database, to discuss the main features and advantages of the proposed strategy for the study of brain functional correlations. These results show new interpretations of the correlations found on this sample.

q-bio.NC↗

arXiv2020

Box-scaling as a proxy of finite-size correlations

The scaling of correlations as a function of system size provides important hints to understand critical phenomena on a variety of systems. Its study in biological systems offers two challenges: usually they are not of infinite size, and in the majority of cases sizes can not be varied at will. Here we discuss how finite-size scaling can be approximated in an experimental system of fixed and relatively small size by computing correlations inside of a reduced field of view of various sizes (i.e., "box-scaling"). Numerical simulations of a neuronal network are used to verify such approximation, as well as the ferromagnetic 2D Ising model. The numerical results support the validity of the heuristic approach, which should be useful to characterize relevant aspects of critical phenomena in biological systems.

cond-mat.dis-nn↗

arXiv2019

Universal and non-universal neural dynamics on small world connectomes: a finite size scaling analysis

Evidence of critical dynamics has been recently found in both experiments and models of large scale brain dynamics. The understanding of the nature and features of such critical regime is hampered by the relatively small size of the available connectome, which prevent among other things to determine its associated universality class. To circumvent that, here we study a neural model defined on a class of small-world network that share some topological features with the human connectome. We found that varying the topological parameters can give rise to a scale-invariant behavior belonging either to mean field percolation universality class or having non universal critical exponents. In addition, we found certain regions of the topological parameters space where the system presents a discontinuous (i.e., non critical) dynamical phase transition into a percolated state. Overall these results shed light on the interplay of dynamical and topological roots of the complex brain dynamics.

cond-mat.dis-nn↗

arXiv2019

Controlling a complex system near its critical point via temporal correlations

A wide variety of complex systems exhibit large fluctuations both in space and time that often can be attributed to the presence of some kind of critical phenomena. Under such critical scenario it is well known that the properties of the correlation functions in space and time are two sides of the same coin. Here we test wether systems exhibiting a phase transition could self-tune to its critical point taking advantage of such correlation properties. We describe results in three models: the 2D Ising ferromagnetic model, the 3D Vicsek flocking model and a small-world neuronal network model. We illustrate how the feedback of the autocorrelation function of the order parameter fluctuations is able to shift the system towards its critical point. Since the results rely on universal properties they are expected to be relevant to a variety of other settings.

cond-mat.dis-nn↗

arXiv2019

Classifying attention deficit hyperactivity disorder in children with non-linearities in actigraphy

Objective This study provides an objective measure based on actigraphy for Attention Deficit Hyperactivity Disorder (ADHD) diagnosis in children. We search for motor activity features that could allow further investigation into their association with other neurophysiological disordered traits. Method The study involved $n=29$ (48 eligible) male participants aged $9.89\pm0.92$ years (8 controls, and 7 in each group: ADHD combined subtype, ADHD hyperactive-impulsive subtype, and autism spectrum disorder, ASD) wearing a wristwatch actigraph continuously for a week ($9\%$ losses in daily records) in two acquisition modes. We analyzed 47 quantities: from sleep duration or movement intensity to theory-driven scaling exponents or non-linear prediction errors of both diurnal and nocturnal activity. We used them in supervised classification to obtain cross-validated diagnostic performance. Results We report the best performing measures, including a nearest neighbors 4-feature classifier providing $69.4\pm1.6\%$ accuracy, $78.0\pm2.2\%$ sensitivity and $60.8\pm2.6\%$ specificity in a binary ADHD vs control classification and $46.5\pm1.1\%$ accuracy (against $25\%$ baseline), $61.8\pm1.4\%$ sensitivity and $79.30 \pm0.43\%$ specificity in 4-class task (two ADHD subtypes, ASD, and control). The most informative feature is skewness of the shape of Zero Crossing Mode (ZCM) activity. Mean and standard deviation of nocturnal activity are among the least informative. Conclusion Actigraphy causes only minor discomfort to the subjects and is inexpensive. The range of existing mathematical and machine learning tools also allow it to be a useful add-on test for ADHD or differential diagnosis between ADHD subtypes. The study was limited to a small, male sample without the inattentive ADHD subtype.

q-bio.QM↗

arXiv2018

Life at the edge: complexity and criticality in biological function

Why life is complex and --most importantly-- what is the origin of the over abundance of complexity in nature? This is a fundamental scientific question which, paraphrasing the late Per Bak, "is screaming to be answered but seldom is even being asked". In these lectures we review recent attempts across several scales to understand the origins of complex biological problems from the perspective of critical phenomena. To illustrate the approach three cases are discussed, namely the large scale brain dynamics, the characterisation of spontaneous fluctuations of proteins and the physiological complexity of the cell mitochondria network.

q-bio.OT↗

arXiv2018

How ants move: individual and collective scaling properties

The motion of social insects is often used a paradigmatic example of complex adaptive dynamics arising from decentralized individual behavior. In this paper we revisit the topic of the ruling laws behind burst of activity in ants. The analysis, done over previously reported data, reconsider the causation arrows, proposed at individual level, not finding any link between the duration of the ants' activity and its moving speed. Secondly, synthetic trajectories created from steps of different ants, demonstrate that a Markov process can explain the previously reported speed shape profile. Finally we show that as more ants enter the nest, the faster they move, which implies a collective property. Overall these results provides a mechanistic explanation for the reported behavioral laws, and suggest a formal way to further study the collective properties in these scenarios.

q-bio.QM↗

arXiv2018

On the pros and cons of using temporal derivatives to assess brain functional connectivity

The study of correlations between brain regions is an important chapter of the analysis of large-scale brain spatiotemporal dynamics. In particular, novel methods suited to extract dynamic changes in mutual correlations are needed. Here we scrutinize a recently reported metric dubbed "Multiplication of Temporal Derivatives" (MTD) which is based on the temporal derivative of each time series. The formal comparison of the MTD formula with the Pearson correlation of the derivatives reveals only minor differences, which we find negligible in practice. A comparison with the sliding window Pearson correlation of the raw time series in several stationary and non-stationary set-ups, including a realistic stationary network detection, reveals lower sensitivity of derivatives to low frequency drifts and to autocorrelations but also lower signal-to-noise ratio. It does not indicate any evident mathematical advantages of the proposed metric over commonly used correlation methods.

q-bio.NC↗

arXiv2018

Mitochondrial network complexity emerges from fission/fusion dynamics

Mitochondrial networks exhibit a variety of complex behaviors, including coordinated cell-wide oscillations of energy states as well as a phase transition (depolarization) in response to oxidative stress. Since functional and structural properties are often interwinded, here we characterize the structure of mitochondrial networks in mouse embryonic fibroblasts using network tools and percolation theory. Subsequently we perturbed the system either by promoting the fusion of mitochondrial segments or by inducing mitochondrial fission. Quantitative analysis of mitochondrial clusters revealed that the structural parameters of healthy mitochondria lay in between the extremes of highly fragmented and completely fusioned networks. We confirmed our results by contrasting our emprirical findings with the predictions of a recently described computational model of mitochondrial network emergence based on fission-fusion kinetics. Altogether these results not only offer an objective methodology to parametrize the complexity of this organelle but add weight to the idea that mitochondrial networks behave as critical systems and undergo structural phase transitions.

physics.bio-ph↗

arXiv2017

Invited review: Fluctuation-induced transport. From the very small to the very large scales

The study of fluctuation-induced transport is concerned with the directed motion of particles on a substrate when subjected to a fluctuating external field. Work over the last two decades provides now precise clues on how the average transport depends on three fundamental aspects: the shape of the substrate, the correlations of the fluctuations and the mass, geometry, interaction and density of the particles. These three aspects, reviewed here, acquire additional relevance because the same notions apply to a bewildering variety of problems at very different scales, from the small nano or micro-scale, where thermal fluctuations effects dominate, up to very large scales including ubiquitous cooperative phenomena in granular materials.

nlin.CD↗

arXiv2016

Critical fluctuations in proteins native states

We study a large data set of protein structure ensembles of very diverse sizes determined by nuclear magnetic resonance. By examining the distance-dependent correlations in the displacement of residues pairs and conducting finite size scaling analysis it was found that the correlations and susceptibility behave as in systems near a critical point implying that, at the native state, the motion of each amino acid residue is felt by every other residue up to the size of the protein molecule. Furthermore certain protein's shapes corresponding to maximum susceptibility were found to be more probable than others. Overall the results suggest that the protein's native state is critical, implying that despite being posed near the minimum of the energy landscape, they still preserve their dynamic flexibility.

physics.bio-ph↗

arXiv2015

Large-scale signatures of unconsciousness are consistent with a departure from critical dynamics

Loss of cortical integration and changes in the dynamics of electrophysiological brain signals characterize the transition from wakefulness towards unconsciousness. The common mechanism underlying these observations remains unknown. In this study we arrive at a basic model, which explains these empirical observations based on the theory of phase transitions in complex systems. We studied the link between spatial and temporal correlations of large-scale brain activity recorded with functional magnetic resonance imaging during wakefulness, propofol-induced sedation and loss of consciousness, as well as during the subsequent recovery. We observed that during unconsciousness activity in frontal and thalamic regions exhibited a reduction of long-range temporal correlations and a departure of functional connectivity from the underlying anatomical constraints. These changes in dynamics and anatomy-function coupling were correlated across participants, suggesting that temporal complexity and an efficient exploration of anatomical connectivity are inter-related phenomena. A model of a system exhibiting a phase transition reproduced our findings, as well as the diminished sensitivity of the cortex to external perturbations during unconsciousness. This theoretical framework unifies different empirical observations about brain activity during unconsciousness and predicts that the principles we identified are universal and independent of the causes behind loss of awareness.

q-bio.NC↗

arXiv2015

How we move is universal: scaling in the average shape of human activity

Human motor activity is constrained by the rhythmicity of the 24 hours circadian cycle, including the usual 12-15 hours sleep-wake cycle. However, activity fluctuations also appear over a wide range of temporal scales, from days to a few seconds, resulting from the concatenation of a myriad of individual smaller motor events. Furthermore, individuals present different propensity to wakefulness and thus to motor activity throughout the circadian cycle. Are activity fluctuations across temporal scales intrinsically different, or is there a universal description encompassing them? Is this description also universal across individuals, considering the aforementioned variability? Here we establish the presence of universality in motor activity fluctuations based on the empirical study of a month of continuous wristwatch accelerometer recordings. We study the scaling of average fluctuations across temporal scales and determine a universal law characterized by critical exponents $α$, $τ$ and $1/μ$. Results are highly reminiscent of the universality described for the average shape of avalanches in systems exhibiting crackling noise. Beyond its theoretical relevance, the present results can be important for developing objective markers of healthy as well as pathological human motor behavior.

q-bio.NC↗

arXiv2014

A few points suffice: Efficient large-scale computation of brain voxel-wise functional connectomes from a sparse spatio-temporal point-process

Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions using big volumes of neuroimaging data. Functional magnetic resonance imaging (fMRI) can produce these functional connectomes, however, large amounts of data and lengthy computation times add important overhead to this task. Previous work has demonstrated that fMRI data admits a sparse representation in the form a discrete point-process containing sufficient information for the efficient estimation of functional connectivity between all pairs of voxels. In this work we validate this method, by replicating results obtained with standard whole-brain voxel-wise linear correlation matrices in two datasets. In the first one (n=71) we study the changes in node strength (a measure of network centrality) during deep sleep. The second is a large database (n=1147) of subjects in which we look at the age-related reorganization of the voxel-wise network of functional connections. In both cases it is shown that the proposed method compares well with standard techniques, despite requiring of the order of 1 % of the original fMRI time series. Overall, these results demonstrate that the proposed approach allows efficient fMRI data compression and a subsequent reduction of computation times.

q-bio.NC↗

arXiv2014

Enhanced repertoire of brain dynamical states during the psychedelic experience

The study of rapid changes in brain dynamics and functional connectivity (FC) is of increasing interest in neuroimaging. Brain states departing from normal waking consciousness are expected to be accompanied by alterations in the aforementioned dynamics. In particular, the psychedelic experience produced by psilocybin (a substance found in `magic mushrooms`) is characterized by unconstrained cognition and profound alterations in the perception of time, space and selfhood. Considering the spontaneous and subjective manifestation of these effects, we hypothesize that neural correlates of the psychedelic experience can be found in the dynamics and variability of spontaneous brain activity fluctuations and connectivity, measurable with functional Magnetic Resonance Imaging (fMRI). Fifteen healthy subjects were scanned before, during and after intravenous infusion of psilocybin and an inert placebo. Blood-Oxygen Level Dependent (BOLD) temporal variability was assessed computing the variance and total spectral power, resulting in increased signal variability bilaterally in the hippocampi and anterior cingulate cortex. Changes in BOLD signal spectral behavior (including spectral scaling exponents) affected exclusively higher brain systems such as the default mode, executive control and dorsal attention networks. A novel framework enabled us to track different connectivity states explored by the brain during rest. This approach revealed a wider repertoire of connectivity states post-psilocybin than during control conditions. Together, the present results provide a comprehensive account of the effects of psilocybin on dynamical behaviour in the human brain at a macroscopic level and may have implications for our understanding of the unconstrained, hyper-associative quality of consciousness in the psychedelic state.

q-bio.NC↗

arXiv2013

Point-process deconvolution of fMRI reveals effective connectivity alterations in chronic pain patients

It is now recognized that important information can be extracted from the brain spontaneous activity, as exposed by recent analysis using a repertoire of computational methods. In this context a novel method, based on a blind deconvolution technique, is used in this paper to analyze potential changes due to chronic pain in the brain pain matrix's effective connectivity. The approach is able to deconvolve the hemodynamic response function to spontaneous neural events, i.e., in the absence of explicit onset timings, and to evaluate information transfer between two regions as a joint probability of the occurrence of such spontaneous events. The method revealed that the chronic pain patients exhibit important changes in the Insula's effective connectivity which can be relevant to understand the overall impact of chronic pain on brain function.

q-bio.NC↗

arXiv2013

Disruption of transfer entropy and inter-hemispheric brain functional connectivity in patients with disorder of consciousness

Severe traumatic brain injury can lead to disorders of consciousness (DOC) characterized by deficit in conscious awareness and cognitive impairment including coma, vegetative state, minimally consciousness, and lock-in syndrome. Of crucial importance is to find objective markers that can account for the large-scale disturbances of brain function to help the diagnosis and prognosis of DOC patients and eventually the prediction of the coma outcome. Following recent studies suggesting that the functional organization of brain networks can be altered in comatose patients, this work analyzes brain functional connectivity (FC) networks obtained from resting-state functional magnetic resonance imaging (rs-fMRI). Two approaches are used to estimate the FC: the Partial Correlation (PC) and the Transfer Entropy (TE). Both the PC and the TE show significant statistical differences between the group of patients and control subjects; in brief, the inter-hemispheric PC and the intra-hemispheric TE account for such differences. Overall, these results suggest two possible rs-fMRI markers useful to design new strategies for the management and neuropsychological rehabilitation of DOC patients.

q-bio.NC↗