arXiv subjects

Daoce Wang

Publications and source records attributed to Daoce Wang.

11 recordsLinked to original sources

arXiv2025

STZ: A High Quality and High Speed Streaming Lossy Compression Framework for Scientific Data

Error-bounded lossy compression is one of the most efficient solutions to reduce the volume of scientific data. For lossy compression, progressive decompression and random-access decompression are critical features that enable on-demand data access and flexible analysis workflows. However, these features can severely degrade compression quality and speed. To address these limitations, we propose a novel streaming compression framework that supports both progressive decompression and random-access decompression while maintaining high compression quality and speed. Our contributions are three-fold: (1) we design the first compression framework that simultaneously enables both progressive decompression and random-access decompression; (2) we introduce a hierarchical partitioning strategy to enable both streaming features, along with a hierarchical prediction mechanism that mitigates the impact of partitioning and achieves high compression quality -- even comparable to state-of-the-art (SOTA) non-streaming compressor SZ3; and (3) our framework delivers high compression and decompression speed, up to 6.7$\times$ faster than SZ3.

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arXiv2025

FLARE: A Dataflow-Aware and Scalable Hardware Architecture for Neural-Hybrid Scientific Lossy Compression

Scientific simulation leveraging high-performance computing (HPC) systems is crucial for modeling complex systems and phenomena in fields such as astrophysics, climate science, and fluid dynamics, generating massive datasets that often reach petabyte to exabyte scales. However, managing these vast data volumes introduces significant I/O and network bottlenecks, limiting practical performance and scalability. While cutting-edge lossy compression frameworks powered by deep neural networks (DNNs) have demonstrated superior compression ratios by capturing complex data correlations, their integration into HPC workflows poses substantial challenges due to the hybrid non-neural and neural computation patterns, causing excessive memory access overhead, large sequential stalls, and limited adaptability to varying data sizes and workloads in existing hardware platforms. To overcome these challenges and push the limit of high-performance scientific computing, we for the first time propose FLARE, a dataflow-aware and scalable hardware architecture for neural-hybrid scientific lossy compression. FLARE minimizes off-chip data access, reduces bubble overhead through efficient dataflow, and adopts a modular design that provides both scalability and flexibility, significantly enhancing throughput and energy efficiency on modern HPC systems. Particularly, the proposed FLARE achieves runtime speedups ranging from $3.50 \times$ to $96.07 \times$, and energy efficiency improvements ranging from $24.51 \times$ to $520.68 \times$, across various datasets and hardware platforms.

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arXiv2024

SDP4Bit: Toward 4-bit Communication Quantization in Sharded Data Parallelism for LLM Training

Recent years have witnessed a clear trend towards language models with an ever-increasing number of parameters, as well as the growing training overhead and memory usage. Distributed training, particularly through Sharded Data Parallelism (ShardedDP) which partitions optimizer states among workers, has emerged as a crucial technique to mitigate training time and memory usage. Yet, a major challenge in the scalability of ShardedDP is the intensive communication of weights and gradients. While compression techniques can alleviate this issue, they often result in worse accuracy. Driven by this limitation, we propose SDP4Bit (Toward 4Bit Communication Quantization in Sharded Data Parallelism for LLM Training), which effectively reduces the communication of weights and gradients to nearly 4 bits via two novel techniques: quantization on weight differences, and two-level gradient smooth quantization. Furthermore, SDP4Bit presents an algorithm-system co-design with runtime optimization to minimize the computation overhead of compression. In addition to the theoretical guarantees of convergence, we empirically evaluate the accuracy of SDP4Bit on the pre-training of GPT models with up to 6.7 billion parameters, and the results demonstrate a negligible impact on training loss. Furthermore, speed experiments show that SDP4Bit achieves up to 4.08$\times$ speedup in end-to-end throughput on a scale of 128 GPUs.

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arXiv2024

NeurLZ: An Online Neural Learning-Based Method to Enhance Scientific Lossy Compression

Large-scale scientific simulations generate massive datasets, posing challenges for storage and I/O. Traditional lossy compression struggles to advance more in balancing compression ratio, data quality, and adaptability to diverse scientific data features. While deep learning-based solutions have been explored, their common practice of relying on large models and offline training limits adaptability to dynamic data characteristics and computational efficiency. To address these challenges, we propose NeurLZ, a neural method designed to enhance lossy compression by integrating online learning, cross-field learning, and robust error regulation. Key innovations of NeurLZ include: (1) compression-time online neural learning with lightweight skipping DNN models, adapting to residual errors without costly offline pertaining, (2) the error-mitigating capability, recovering fine details from compression errors overlooked by conventional compressors, (3) $1\times$ and $2\times$ error-regulation modes, ensuring strict adherence to $1\times$ user-input error bounds strictly or relaxed 2$\times$ bounds for better overall quality, and (4) cross-field learning leveraging inter-field correlations in scientific data to improve conventional methods. Comprehensive evaluations on representative HPC datasets, e.g., Nyx, Miranda, Hurricane, against state-of-the-art compressors show NeurLZ's effectiveness. During the first five learning epochs, NeurLZ achieves an 89% bit rate reduction, with further optimization yielding up to around 94% reduction at equivalent distortion, significantly outperforming existing methods, demonstrating NeurLZ's superior performance in enhancing scientific lossy compression as a scalable and efficient solution.

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arXiv2024

A High-Quality Workflow for Multi-Resolution Scientific Data Reduction and Visualization

Multi-resolution methods such as Adaptive Mesh Refinement (AMR) can enhance storage efficiency for HPC applications generating vast volumes of data. However, their applicability is limited and cannot be universally deployed across all applications. Furthermore, integrating lossy compression with multi-resolution techniques to further boost storage efficiency encounters significant barriers. To this end, we introduce an innovative workflow that facilitates high-quality multi-resolution data compression for both uniform and AMR simulations. Initially, to extend the usability of multi-resolution techniques, our workflow employs a compression-oriented Region of Interest (ROI) extraction method, transforming uniform data into a multi-resolution format. Subsequently, to bridge the gap between multi-resolution techniques and lossy compressors, we optimize three distinct compressors, ensuring their optimal performance on multi-resolution data. Lastly, we incorporate an advanced uncertainty visualization method into our workflow to understand the potential impacts of lossy compression. Experimental evaluation demonstrates that our workflow achieves significant compression quality improvements.

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arXiv2024

A Survey on Error-Bounded Lossy Compression for Scientific Datasets

Error-bounded lossy compression has been effective in significantly reducing the data storage/transfer burden while preserving the reconstructed data fidelity very well. Many error-bounded lossy compressors have been developed for a wide range of parallel and distributed use cases for years. They are designed with distinct compression models and principles, such that each of them features particular pros and cons. In this paper we provide a comprehensive survey of emerging error-bounded lossy compression techniques. The key contribution is fourfold. (1) We summarize a novel taxonomy of lossy compression into 6 classic models. (2) We provide a comprehensive survey of 10 commonly used compression components/modules. (3) We summarized pros and cons of 46 state-of-the-art lossy compressors and present how state-of-the-art compressors are designed based on different compression techniques. (4) We discuss how customized compressors are designed for specific scientific applications and use-cases. We believe this survey is useful to multiple communities including scientific applications, high-performance computing, lossy compression, and big data.

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arXiv2023

TAC+: Optimizing Error-Bounded Lossy Compression for 3D AMR Simulations

Today's scientific simulations require significant data volume reduction because of the enormous amounts of data produced and the limited I/O bandwidth and storage space. Error-bounded lossy compression has been considered one of the most effective solutions to the above problem. However, little work has been done to improve error-bounded lossy compression for Adaptive Mesh Refinement (AMR) simulation data. Unlike the previous work that only leverages 1D compression, in this work, we propose an approach (TAC) to leverage high-dimensional SZ compression for each refinement level of AMR data. To remove the data redundancy across different levels, we propose several pre-process strategies and adaptively use them based on the data features. We further optimize TAC to TAC+ by improving the lossless encoding stage of SZ compression to handle many small AMR data blocks after the pre-processing efficiently. Experiments on 10 AMR datasets from three real-world large-scale AMR simulations demonstrate that TAC+ can improve the compression ratio by up to 4.9$\times$ under the same data distortion, compared to the state-of-the-art method. In addition, we leverage the flexibility of our approach to tune the error bound for each level, which achieves much lower data distortion on two application-specific metrics.

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arXiv2023

Analyzing Impact of Data Reduction Techniques on Visualization for AMR Applications Using AMReX Framework

Today's scientific simulations generate exceptionally large volumes of data, challenging the capacities of available I/O bandwidth and storage space. This necessitates a substantial reduction in data volume, for which error-bounded lossy compression has emerged as a highly effective strategy. A crucial metric for assessing the efficacy of lossy compression is visualization. Despite extensive research on the impact of compression on visualization, there is a notable gap in the literature concerning the effects of compression on the visualization of Adaptive Mesh Refinement (AMR) data. AMR has proven to be a potent solution for addressing the rising computational intensity and the explosive growth in data volume that requires storage and transmission. However, the hierarchical and multi-resolution characteristics of AMR data introduce unique challenges to its visualization, and these challenges are further compounded when data compression comes into play. This article delves into the intricacies of how data compression influences and introduces novel challenges to the visualization of AMR data.

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arXiv2023

AMRIC: A Novel In Situ Lossy Compression Framework for Efficient I/O in Adaptive Mesh Refinement Applications

As supercomputers advance towards exascale capabilities, computational intensity increases significantly, and the volume of data requiring storage and transmission experiences exponential growth. Adaptive Mesh Refinement (AMR) has emerged as an effective solution to address these two challenges. Concurrently, error-bounded lossy compression is recognized as one of the most efficient approaches to tackle the latter issue. Despite their respective advantages, few attempts have been made to investigate how AMR and error-bounded lossy compression can function together. To this end, this study presents a novel in-situ lossy compression framework that employs the HDF5 filter to improve both I/O costs and boost compression quality for AMR applications. We implement our solution into the AMReX framework and evaluate on two real-world AMR applications, Nyx and WarpX, on the Summit supercomputer. Experiments with 4096 CPU cores demonstrate that AMRIC improves the compression ratio by up to 81X and the I/O performance by up to 39X over AMReX's original compression solution.

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arXiv2022

TAC: Optimizing Error-Bounded Lossy Compression for Three-Dimensional Adaptive Mesh Refinement Simulations

Today's scientific simulations require a significant reduction of data volume because of extremely large amounts of data they produce and the limited I/O bandwidth and storage space. Error-bounded lossy compression has been considered one of the most effective solutions to the above problem. However, little work has been done to improve error-bounded lossy compression for Adaptive Mesh Refinement (AMR) simulation data. Unlike the previous work that only leverages 1D compression, in this work, we propose to leverage high-dimensional (e.g., 3D) compression for each refinement level of AMR data. To remove the data redundancy across different levels, we propose three pre-process strategies and adaptively use them based on the data characteristics. Experiments on seven AMR datasets from a real-world large-scale AMR simulation demonstrate that our proposed approach can improve the compression ratio by up to 3.3X under the same data distortion, compared to the state-of-the-art method. In addition, we leverage the flexibility of our approach to tune the error bound for each level, which achieves much lower data distortion on two application-specific metrics.

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arXiv2021

Characterizing Impacts of Storage Faults on HPC Applications: A Methodology and Insights

In recent years, the increasing complexity in scientific simulations and emerging demands for training heavy artificial intelligence models require massive and fast data accesses, which urges high-performance computing (HPC) platforms to equip with more advanced storage infrastructures such as solid-state disks (SSDs). While SSDs offer high-performance I/O, the reliability challenges faced by the HPC applications under the SSD-related failures remains unclear, in particular for failures resulting in data corruptions. The goal of this paper is to understand the impact of SSD-related faults on the behaviors of complex HPC applications. To this end, we propose FFIS, a FUSE-based fault injection framework that systematically introduces storage faults into the application layer to model the errors originated from SSDs. FFIS is able to plant different I/O related faults into the data returned from underlying file systems, which enables the investigation on the error resilience characteristics of the scientific file format. We demonstrate the use of FFIS with three representative real HPC applications, showing how each application reacts to the data corruptions, and provide insights on the error resilience of the widely adopted HDF5 file format for the HPC applications.

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