arXiv subjects

David Atienza

Publications and source records attributed to David Atienza.

90 records · Page 5Linked to original sources

arXiv2022

Many-to-One Knowledge Distillation of Real-Time Epileptic Seizure Detection for Low-Power Wearable Internet of Things Systems

Integrating low-power wearable Internet of Things (IoT) systems into routine health monitoring is an ongoing challenge. Recent advances in the computation capabilities of wearables make it possible to target complex scenarios by exploiting multiple biosignals and using high-performance algorithms, such as Deep Neural Networks (DNNs). There is, however, a trade-off between performance of the algorithms and the low-power requirements of IoT platforms with limited resources. Besides, physically larger and multi-biosignal-based wearables bring significant discomfort to the patients. Consequently, reducing power consumption and discomfort is necessary for patients to use IoT devices continuously during everyday life. To overcome these challenges, in the context of epileptic seizure detection, we propose a many-to-one signals knowledge distillation approach targeting single-biosignal processing in IoT wearable systems. The starting point is to get a highly-accurate multi-biosignal DNN, then apply our approach to develop a single-biosignal DNN solution for IoT systems that achieves an accuracy comparable to the original multi-biosignal DNN. To assess the practicality of our approach to real-life scenarios, we perform a comprehensive simulation experiment analysis on several state-of-the-art edge computing platforms, such as Kendryte K210 and Raspberry Pi Zero.

eess.SP↗

arXiv2022

Event-based sampled ECG morphology reconstruction through self-similarity

Background and Objective: Event-based analog-to-digital converters allow for sparse bio-signal acquisition, enabling local sub-Nyquist sampling frequency. However, aggressive event selection can cause the loss of important bio-markers, not recoverable with standard interpolation techniques. In this work, we leverage the self-similarity of the electrocardiogram (ECG) signal to recover missing features in event-based sampled ECG signals, dynamically selecting patient-representative templates together with a novel dynamic time warping algorithm to infer the morphology of event-based sampled heartbeats. Methods: We acquire a set of uniformly sampled heartbeats and use a graph-based clustering algorithm to define representative templates for the patient. Then, for each event-based sampled heartbeat, we select the morphologically nearest template, and we then reconstruct the heartbeat with piece-wise linear deformations of the selected template, according to a novel dynamic time warping algorithm that matches events to template segments. Results: Synthetic tests on a standard normal sinus rhythm dataset, composed of approximately 1.8 million normal heartbeats, show a big leap in performance with respect to standard resampling techniques. In particular (when compared to classic linear resampling), we show an improvement in P-wave detection of up to 10 times, an improvement in T-wave detection of up to three times, and a 30\% improvement in the dynamic time warping morphological distance. Conclusion: In this work, we have developed an event-based processing pipeline that leverages signal self-similarity to reconstruct event-based sampled ECG signals. Synthetic tests show clear advantages over classical resampling techniques.

eess.SP↗

arXiv2022

HDTorch: Accelerating Hyperdimensional Computing with GP-GPUs for Design Space Exploration

HyperDimensional Computing (HDC) as a machine learning paradigm is highly interesting for applications involving continuous, semi-supervised learning for long-term monitoring. However, its accuracy is not yet on par with other Machine Learning (ML) approaches. Frameworks enabling fast design space exploration to find practical algorithms are necessary to make HD computing competitive with other ML techniques. To this end, we introduce HDTorch, an open-source, PyTorch-based HDC library with CUDA extensions for hypervector operations. We demonstrate HDTorch's utility by analyzing four HDC benchmark datasets in terms of accuracy, runtime, and memory consumption, utilizing both classical and online HD training methodologies. We demonstrate average (training)/inference speedups of (111x/68x)/87x for classical/online HD, respectively. Moreover, we analyze the effects of varying hyperparameters on runtime and accuracy. Finally, we demonstrate how HDTorch enables exploration of HDC strategies applied to large, real-world datasets. We perform the first-ever HD training and inference analysis of the entirety of the CHB-MIT EEG epilepsy database. Results show that the typical approach of training on a subset of the data does not necessarily generalize to the entire dataset, an important factor when developing future HD models for medical wearable devices.

cs.LG↗

arXiv2022

VWR2A: A Very-Wide-Register Reconfigurable-Array Architecture for Low-Power Embedded Devices

Edge-computing requires high-performance energy-efficient embedded systems. Fixed-function or custom accelerators, such as FFT or FIR filter engines, are very efficient at implementing a particular functionality for a given set of constraints. However, they are inflexible when facing application-wide optimizations or functionality upgrades. Conversely, programmable cores offer higher flexibility, but often with a penalty in area, performance, and, above all, energy consumption. In this paper, we propose VWR2A, an architecture that integrates high computational density and low power memory structures (i.e., very-wide registers and scratchpad memories). VWR2A narrows the energy gap with similar or better performance on FFT kernels with respect to an FFT accelerator. Moreover, VWR2A flexibility allows to accelerate multiple kernels, resulting in significant energy savings at the application level.

cs.AR↗

arXiv2022

Hyperdimensional computing encoding for feature selection on the use case of epileptic seizure detection

The healthcare landscape is moving from the reactive interventions focused on symptoms treatment to a more proactive prevention, from one-size-fits-all to personalized medicine, and from centralized to distributed paradigms. Wearable IoT devices and novel algorithms for continuous monitoring are essential components of this transition. Hyperdimensional (HD) computing is an emerging ML paradigm inspired by neuroscience research with various aspects interesting for IoT devices and biomedical applications. Here we explore the not yet addressed topic of optimal encoding of spatio-temporal data, such as electroencephalogram (EEG) signals, and all information it entails to the HD vectors. Further, we demonstrate how the HD computing framework can be used to perform feature selection by choosing an adequate encoding. To the best of our knowledge, this is the first approach to performing feature selection using HD computing in the literature. As a result, we believe it can support the ML community to further foster the research in multiple directions related to feature and channel selection, as well as model interpretability.

cs.NE↗

arXiv2022

Exploration of Hyperdimensional Computing Strategies for Enhanced Learning on Epileptic Seizure Detection

Wearable and unobtrusive monitoring and prediction of epileptic seizures has the potential to significantly increase the life quality of patients, but is still an unreached goal due to challenges of real-time detection and wearable devices design. Hyperdimensional (HD) computing has evolved in recent years as a new promising machine learning approach, especially when talking about wearable applications. But in the case of epilepsy detection, standard HD computing is not performing at the level of other state-of-the-art algorithms. This could be due to the inherent complexity of the seizures and their signatures in different biosignals, such as the electroencephalogram (EEG), the highly personalized nature, and the disbalance of seizure and non-seizure instances. In the literature, different strategies for improved learning of HD computing have been proposed, such as iterative (multi-pass) learning, multi-centroid learning and learning with sample weight ("OnlineHD"). Yet, most of them have not been tested on the challenging task of epileptic seizure detection, and it stays unclear whether they can increase the HD computing performance to the level of the current state-of-the-art algorithms, such as random forests. Thus, in this paper, we implement different learning strategies and assess their performance on an individual basis, or in combination, regarding detection performance and memory and computational requirements. Results show that the best-performing algorithm, which is a combination of multi-centroid and multi-pass, can indeed reach the performance of the random forest model on a highly unbalanced dataset imitating a real-life epileptic seizure detection application.

cs.NE↗

arXiv2021

Adaptive R-Peak Detection on Wearable ECG Sensors for High-Intensity Exercise

Objective: Continuous monitoring of biosignals via wearable sensors has quickly expanded in the medical and wellness fields. At rest, automatic detection of vital parameters is generally accurate. However, in conditions such as high-intensity exercise, sudden physiological changes occur to the signals, compromising the robustness of standard algorithms. Methods: Our method, called BayeSlope, is based on unsupervised learning, Bayesian filtering, and non-linear normalization to enhance and correctly detect the R peaks according to their expected positions in the ECG. Furthermore, as BayeSlope is computationally heavy and can drain the device battery quickly, we propose an online design that adapts its robustness to sudden physiological changes, and its complexity to the heterogeneous resources of modern embedded platforms. This method combines BayeSlope with a lightweight algorithm, executed in cores with different capabilities, to reduce the energy consumption while preserving the accuracy. Results: BayeSlope achieves an F1 score of 99.3% in experiments during intense cycling exercise with 20 subjects. Additionally, the online adaptive process achieves an F1 score of 99% across five different exercise intensities, with a total energy consumption of 1.55+-0.54~mJ. Conclusion: We propose a highly accurate and robust method, and a complete energy-efficient implementation in a modern ultra-low-power embedded platform to improve R peak detection in challenging conditions, such as during high-intensity exercise. Significance: The experiments show that BayeSlope outperforms a state-of-the-art algorithm up to 8.4% in F1 score, while our online adaptive method can reach energy savings up to 38.7% on modern heterogeneous wearable platforms.

eess.SP↗

arXiv2021

Multi-Centroid Hyperdimensional Computing Approach for Epileptic Seizure Detection

Long-term monitoring of patients with epilepsy presents a challenging problem from the engineering perspective of real-time detection and wearable devices design. It requires new solutions that allow continuous unobstructed monitoring and reliable detection and prediction of seizures. A high variability in the electroencephalogram (EEG) patterns exists among people, brain states, and time instances during seizures, but also during non-seizure periods. This makes epileptic seizure detection very challenging, especially if data is grouped under only seizure and non-seizure labels. Hyperdimensional (HD) computing, a novel machine learning approach, comes in as a promising tool. However, it has certain limitations when the data shows a high intra-class variability. Therefore, in this work, we propose a novel semi-supervised learning approach based on a multi-centroid HD computing. The multi-centroid approach allows to have several prototype vectors representing seizure and non-seizure states, which leads to significantly improved performance when compared to a simple 2-class HD model. Further, real-life data imbalance poses an additional challenge and the performance reported on balanced subsets of data is likely to be overestimated. Thus, we test our multi-centroid approach with three different dataset balancing scenarios, showing that performance improvement is higher for the less balanced dataset. More specifically, up to 14% improvement is achieved on an unbalanced test set with 10 times more non-seizure than seizure data. At the same time, the total number of sub-classes is not significantly increased compared to the balanced dataset. Thus, the proposed multi-centroid approach can be an important element in achieving a high performance of epilepsy detection with real-life data balance or during online learning, where seizures are infrequent.

cs.LG↗

arXiv2021

Semiparametric Bayesian Networks

We introduce semiparametric Bayesian networks that combine parametric and nonparametric conditional probability distributions. Their aim is to incorporate the advantages of both components: the bounded complexity of parametric models and the flexibility of nonparametric ones. We demonstrate that semiparametric Bayesian networks generalize two well-known types of Bayesian networks: Gaussian Bayesian networks and kernel density estimation Bayesian networks. For this purpose, we consider two different conditional probability distributions required in a semiparametric Bayesian network. In addition, we present modifications of two well-known algorithms (greedy hill-climbing and PC) to learn the structure of a semiparametric Bayesian network from data. To realize this, we employ a score function based on cross-validation. In addition, using a validation dataset, we apply an early-stopping criterion to avoid overfitting. To evaluate the applicability of the proposed algorithm, we conduct an exhaustive experiment on synthetic data sampled by mixing linear and nonlinear functions, multivariate normal data sampled from Gaussian Bayesian networks, real data from the UCI repository, and bearings degradation data. As a result of this experiment, we conclude that the proposed algorithm accurately learns the combination of parametric and nonparametric components, while achieving a performance comparable with those provided by state-of-the-art methods.

cs.LG↗

arXiv2021

ReLearn: A Robust Machine Learning Framework in Presence of Missing Data for Multimodal Stress Detection from Physiological Signals

Continuous and multimodal stress detection has been performed recently through wearable devices and machine learning algorithms. However, a well-known and important challenge of working on physiological signals recorded by conventional monitoring devices is missing data due to sensors insufficient contact and interference by other equipment. This challenge becomes more problematic when the user/patient is mentally or physically active or stressed because of more frequent conscious or subconscious movements. In this paper, we propose ReLearn, a robust machine learning framework for stress detection from biomarkers extracted from multimodal physiological signals. ReLearn effectively copes with missing data and outliers both at training and inference phases. ReLearn, composed of machine learning models for feature selection, outlier detection, data imputation, and classification, allows us to classify all samples, including those with missing values at inference. In particular, according to our experiments and stress database, while by discarding all missing data, as a simplistic yet common approach, no prediction can be made for 34% of the data at inference, our approach can achieve accurate predictions, as high as 78%, for missing samples. Also, our experiments show that the proposed framework obtains a cross-validation accuracy of 86.8% even if more than 50% of samples within the features are missing.

cs.LG↗

arXiv2021

ReBeatICG: Real-time Low-Complexity Beat-to-beat Impedance Cardiogram Delineation Algorithm

This work presents ReBeatICG, a real-time, low-complexity beat-to-beat impedance cardiography (ICG) delineation algorithm that allows hemodynamic parameters monitoring. The proposed procedure relies only on the ICG signal compared to most algorithms found in the literature that rely on synchronous electrocardiogram signal (ECG) recordings. ReBeatICG was designed with implementation on an ultra-low-power microcontroller (MCU) in mind. The detection accuracy of the developed algorithm is tested against points manually labeled by cardiologists. It achieves a detection Gmean accuracy of 94.9%, 98.6%, 90.3%, and 84.3% for the B, C, X, and O points, respectively. Furthermore, several hemodynamic parameters were calculated based on annotated characteristic points and compared with values generated from the cardiologists' annotations. ReBeatICG achieved mean error rates of 0.11ms, 9.72ms, 8.32ms, and 3.97% for HR, LVET, IVRT, and relative C-point amplitude, respectively.

eess.SP↗

arXiv2021

Wearable and Continuous Prediction of Passage of Time Perception for Monitoring Mental Health

A person's passage of time perception (POTP) is strongly linked to their mental state and stress response, and can therefore provide an easily quantifiable means of continuous mental health monitoring. In this work, we develop a custom experiment and Machine Learning (ML) models for predicting POTP from biomarkers acquired from wearable biosensors. We first confirm that individuals experience time passing slower than usual during fear or sadness (p = 0.046) and faster than usual during cognitive tasks (p = 2 x 10^-5). Then, we group together the experimental segments associated with fast, slow, and normal POTP, and train a ML model to classify between these states based on a person's biomarkers. The classifier had a weighted average F-1 score of 79%, with the fast-passing time class having the highest F-1 score of 93%. Next, we classify each individual's POTP regardless of the task at hand, achieving an F-1 score of 77.1% when distinguishing time passing faster rather than slower than usual. In the two classifiers, biomarkers derived from the respiration, electrocardiogram, skin conductance, and skin temperature signals contributed most to the classifier output, thus enabling real-time POTP monitoring using noninvasive, wearable biosensors.

eess.SP↗

arXiv2021

Systematic Assessment of Hyperdimensional Computing for Epileptic Seizure Detection

Hyperdimensional computing is a promising novel paradigm for low-power embedded machine learning. It has been applied on different biomedical applications, and particularly on epileptic seizure detection. Unfortunately, due to differences in data preparation, segmentation, encoding strategies, and performance metrics, results are hard to compare, which makes building upon that knowledge difficult. Thus, the main goal of this work is to perform a systematic assessment of the HD computing framework for the detection of epileptic seizures, comparing different feature approaches mapped to HD vectors. More precisely, we test two previously implemented features as well as several novel approaches with HD computing on epileptic seizure detection. We evaluate them in a comparable way, i.e., with the same preprocessing setup, and with the identical performance measures. We use two different datasets in order to assess the generalizability of our conclusions. The systematic assessment involved three primary aspects relevant for potential wearable implementations: 1) detection performance, 2) memory requirements, and 3) computational complexity. Our analysis shows a significant difference in detection performance between approaches, but also that the ones with the highest performance might not be ideal for wearable applications due to their high memory or computational requirements. Furthermore, we evaluate a post-processing strategy to adjust the predictions to the dynamics of epileptic seizures, showing that performance is significantly improved in all the approaches and also that after post-processing, differences in performance are much smaller between approaches.

eess.SP↗

arXiv2021

The RECIPE Approach to Challenges in Deeply Heterogeneous High Performance Systems

RECIPE (REliable power and time-ConstraInts-aware Predictive management of heterogeneous Exascale systems) is a recently started project funded within the H2020 FETHPC programme, which is expressly targeted at exploring new High-Performance Computing (HPC) technologies. RECIPE aims at introducing a hierarchical runtime resource management infrastructure to optimize energy efficiency and minimize the occurrence of thermal hotspots, while enforcing the time constraints imposed by the applications and ensuring reliability for both time-critical and throughput-oriented computation that run on deeply heterogeneous accelerator-based systems. This paper presents a detailed overview of RECIPE, identifying the fundamental challenges as well as the key innovations addressed by the project. In particular, the need for predictive reliability approaches to maximize hardware lifetime and guarantee application performance is identified as the key concern for RECIPE, and is addressed via hierarchical resource management of the heterogeneous architectural components of the system, driven by estimates of the application latency and hardware reliability obtained respectively through timing analysis and modelling thermal properties, mean-time-to-failure of subsystems. We show the impact of prediction accuracy on the overheads imposed by the checkpointing policy, as well as a possible application to a weather forecasting use case.

cs.DC↗

arXiv2020

Interpreting Deep Learning Models for Epileptic Seizure Detection on EEG signals

While Deep Learning (DL) is often considered the state-of-the art for Artificial Intelligence-based medical decision support, it remains sparsely implemented in clinical practice and poorly trusted by clinicians due to insufficient interpretability of neural network models. We have tackled this issue by developing interpretable DL models in the context of online detection of epileptic seizure, based on EEG signal. This has conditioned the preparation of the input signals, the network architecture, and the post-processing of the output in line with the domain knowledge. Specifically, we focused the discussion on three main aspects: 1) how to aggregate the classification results on signal segments provided by the DL model into a larger time scale, at the seizure-level; 2) what are the relevant frequency patterns learned in the first convolutional layer of different models, and their relation with the delta, theta, alpha, beta and gamma frequency bands on which the visual interpretation of EEG is based; and 3) the identification of the signal waveforms with larger contribution towards the ictal class, according to the activation differences highlighted using the DeepLIFT method. Results show that the kernel size in the first layer determines the interpretability of the extracted features and the sensitivity of the trained models, even though the final performance is very similar after post-processing. Also, we found that amplitude is the main feature leading to an ictal prediction, suggesting that a larger patient population would be required to learn more complex frequency patterns. Still, our methodology was successfully able to generalize patient inter-variability for the majority of the studied population with a classification F1-score of 0.873 and detecting 90% of the seizures.

cs.LG↗

arXiv2020

The COUGHVID crowdsourcing dataset: A corpus for the study of large-scale cough analysis algorithms

Cough audio signal classification has been successfully used to diagnose a variety of respiratory conditions, and there has been significant interest in leveraging Machine Learning (ML) to provide widespread COVID-19 screening. However, there is currently no validated database of cough sounds with which to train such ML models. The COUGHVID dataset provides over 20,000 crowdsourced cough recordings representing a wide range of subject ages, genders, geographic locations, and COVID-19 statuses. First, we filtered the dataset using our open-sourced cough detection algorithm. Second, experienced pulmonologists labeled more than 2,000 recordings to diagnose medical abnormalities present in the coughs, thereby contributing one of the largest expert-labeled cough datasets in existence that can be used for a plethora of cough audio classification tasks. Finally, we ensured that coughs labeled as symptomatic and COVID-19 originate from countries with high infection rates, and that their expert labels are consistent. As a result, the COUGHVID dataset contributes a wealth of cough recordings for training ML models to address the world's most urgent health crises.

cs.SD↗

arXiv2019

Synthetic Epileptic Brain Activities Using Generative Adversarial Networks

Epilepsy is a chronic neurological disorder affecting more than 65 million people worldwide and manifested by recurrent unprovoked seizures. The unpredictability of seizures not only degrades the quality of life of the patients, but it can also be life-threatening. Modern systems monitoring electroencephalography (EEG) signals are being currently developed with the view to detect epileptic seizures in order to alert caregivers and reduce the impact of seizures on patients' quality of life. Such seizure detection systems employ state-of-the-art machine learning algorithms that require a considerably large amount of labeled personal data for training. However, acquiring EEG signals of epileptic seizures is a costly and time-consuming process for medical experts and patients, currently requiring in-hospital recordings in specialized units. In this work, we generate synthetic seizure-like brain electrical activities, i.e., EEG signals, that can be used to train seizure detection algorithms, alleviating the need for recorded data. First, we train a Generative Adversarial Network (GAN) with data from 30 epilepsy patients. Then, we generate synthetic personalized training sets for new, unseen patients, which overall yield higher detection performance than the real-data training sets. We demonstrate our results using the datasets from the EPILEPSIAE Project, one of the world's largest public databases for seizure detection.

eess.SP↗

arXiv2012

Markov Decision Process Based Energy-Efficient On-Line Scheduling for Slice-Parallel Video Decoders on Multicore Systems

We consider the problem of energy-efficient on-line scheduling for slice-parallel video decoders on multicore systems. We assume that each of the processors are Dynamic Voltage Frequency Scaling (DVFS) enabled such that they can independently trade off performance for power, while taking the video decoding workload into account. In the past, scheduling and DVFS policies in multi-core systems have been formulated heuristically due to the inherent complexity of the on-line multicore scheduling problem. The key contribution of this report is that we rigorously formulate the problem as a Markov decision process (MDP), which simultaneously takes into account the on-line scheduling and per-core DVFS capabilities; the power consumption of the processor cores and caches; and the loss tolerant and dynamic nature of the video decoder's traffic. In particular, we model the video traffic using a Direct Acyclic Graph (DAG) to capture the precedence constraints among frames in a Group of Pictures (GOP) structure, while also accounting for the fact that frames have different display/decoding deadlines and non-deterministic decoding complexities. The objective of the MDP is to minimize long-term power consumption subject to a minimum Quality of Service (QoS) constraint related to the decoder's throughput. Although MDPs notoriously suffer from the curse of dimensionality, we show that, with appropriate simplifications and approximations, the complexity of the MDP can be mitigated. We implement a slice-parallel version of H.264 on a multiprocessor ARM (MPARM) virtual platform simulator, which provides cycle-accurate and bus signal-accurate simulation for different processors. We use this platform to generate realistic video decoding traces with which we evaluate the proposed on-line scheduling algorithm in Matlab.

cs.MM↗