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David Borchers

Publications and source records attributed to David Borchers.

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Incorporating Animal Movement into Continuous-Time Spatial Capture-Recapture Models

Estimation of wildlife population size and spatial dynamics is central to ecology and conservation. Spatial capture-recapture (SCR) models estimate abundance, using detections at sensors such as camera traps, by linking detection probability to the distance between detectors and latent individual activity centres. However, standard SCR formulations assume detections are conditionally independent over time given activity centres without explicitly modelling movement between detection events. This assumption can be problematic when individuals exhibit movement-driven dependence in detections, potentially leading to biased inference on population size. We address this important issue by developing a continuous-time framework that integrates movement into spatial capture-recapture. Individual movement is modelled as a continuous-time Markov chain over a discretised landscape, and detections arise as state-dependent Poisson events. This yields a Markov-modulated marked Poisson process representation, in which detections provide information about an individual's latent location at the time of observation and allow likelihood-based inference in continuous time. We show through simulation studies that ignoring movement-driven dependence can lead to positively biased estimates of population size, whereas the proposed model recovers unbiased estimates and provides additional inference on space use. An application to camera-trap data of American martens illustrates how the framework yields new insights into movement and density. These results demonstrate that explicitly modelling movement is critical for reliable inference in spatial capture-recapture studies.

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Incorporating Memory into Continuous-Time Spatial Capture-Recapture Models

Obtaining reliable and precise estimates of wildlife species abundance and distribution is essential for the conservation and management of animal populations and natural reserves. Spatial capture-recapture (SCR) models provide estimates of population size and spatial density from data collected from remote sensors such as camera traps. Such data contain spatial correlation between observations of the same individual, which SCR models partly account for through a latent individual-specific activity centre, a location near which the individual is more likely detected. However, SCR models assume that the observations of an individual are independent over time and space, conditional on its activity centre, so that observed sightings at a given time and location do not influence the probability of being seen at future times and/or locations. This assumption is ecologically unrealistic given the smooth movement of animals over space through time. We propose a new continuous-time modelling framework that incorporates both an individual's (latent) activity centre and its (known) previous location and time of detection. By formulating the detections of an individual as an inhomogeneous temporal Poisson process, we develop a model drawing inspiration from the Ornstein-Uhlenbeck process, which is commonly used to model animal movement. Applying our model to a camera-trap survey of American martens, we observe a substantial improvement in model fit and notable differences in the estimated spatial distribution of activity centres. A simulation study shows that standard SCR models can produce substantially biased population estimates when spatio-temporal dependence is ignored, while the memory-based model remains robust. These findings highlight the importance of accounting for memory of previous detections in SCR models to improve ecological interpretation and inference.

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Capture-recapture abundance estimation using a semi-complete data likelihood approach

Capture-recapture data are often collected when abundance estimation is of interest. In the presence of unobserved individual heterogeneity, specified on a continuous scale for the capture probabilities, the likelihood is not generally available in closed form, but expressible only as an analytically intractable integral. Model-fitting algorithms to estimate abundance most notably include a numerical approximation for the likelihood or use of a Bayesian data augmentation technique considering the complete data likelihood. We consider a Bayesian hybrid approach, defining a "semi-complete" data likelihood, composed of the product of a complete data likelihood component for individuals seen at least once within the study and a marginal data likelihood component for the individuals not seen within the study, approximated using numerical integration. This approach combines the advantages of the two different approaches, with the semi-complete likelihood component specified as a single integral (over the dimension of the individual heterogeneity component). In addition, the models can be fitted within BUGS/JAGS (commonly used for the Bayesian complete data likelihood approach) but with significantly improved computational efficiency compared to the commonly used super-population data augmentation approaches (between about 10 and 77 times more efficient in the two examples we consider). The semi-complete likelihood approach is flexible and applicable to a range of models, including spatially explicit capture-recapture models. The model-fitting approach is applied to two different datasets corresponding to the closed population model $M_h$ for snowshoe hare data and a spatially explicit capture-recapture model applied to gibbon data.

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