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David Johnson

Publications and source records attributed to David Johnson.

At least 19 recordsLinked to original sources

Landmark-free Assessment of Lower-limb Alignment with Implicit Neural Shape Functions from Knee Radiographs

Radiographic assessment of lower-limb alignment (LLA) is important for predicting joint health and surgical outcomes in total knee arthroplasty. Traditional measurement methods are manual and time-consuming, while recent machine learning approaches typically rely on locating a fixed set of anatomical landmarks. This dependence limits flexibility and may require re-annotation when clinical definitions change. To address this, we propose an automated workflow using Implicit Neural Shape Functions (INSF). Rather than relying on explicit landmark coordinates, we encode the anatomy into a compact latent space and regress clinical alignment measurements directly from these latent codes. This architecture allows for rapid extendability to new tasks without altering the backbone representation. We trained our method on an internal dataset of 566 knee radiographs, each annotated with the outline of the femur and tibia. We evaluated it on both an internal test dataset of 50 patients and a separate external set of 402 preoperative cases from the MRKR dataset. Manual clinical measurements are available for these data, and the MRKR measurements will be made publicly accessible. Performance was comparable to state-of-the-art landmark-based methods and manual agreement, while offering a flexible shape representation that can be extended to additional measurement tasks.

cs.CV

Enhanced Atom Capture via Multi-Frequency Magneto-Optical Trapping

Magneto-optical traps are central to atomic and molecular quantum technologies and precision tests of fundamental physics, where both sensitivity and bandwidth scale strongly with atom number and loading rate. We demonstrate that employing multiple, closely spaced optical frequency components in the cooling light of a $^{87}$Rb magneto-optical trap -- without utilizing any additional slowing techniques -- can double the steady state atom number and increase the loading rate by up to a factor of 4, compared to a conventional single-frequency implementation. Subsequently, we capture up to $1.0(1)\times10^{10}$ atoms with a loading rate of up to $1.3(2)\times 10^{11}\,\mathrm{atoms\,s^{-1}}$ from a thermal background. Numerical simulations reproduce the observed trends and predict substantially larger gains for increased trap sizes beyond our experimental bounds. By re-examining earlier studies of multi-frequency atom capture in the context of modern experimental hardware and emerging applications, we show that previously identified limitations can be avoided and establish multi-frequency cooling as a practical and scalable route to high-flux cold-atom sources. These results have immediate applications in portable atom-based quantum sensing, where higher bandwidth and precision can be achieved without forgoing compactness, and in atom-interferometric tests of fundamental physics, which benefit from access to larger-mass quantum systems.

physics.atom-ph

MIT Lincoln Laboratory: A Case Study on Improving Software Support for Research Projects

Software plays an ever increasing role in complex system development and prototyping, and in recent years, MIT Lincoln Laboratory has sought to improve both the effectiveness and culture surrounding software engineering in execution of its mission. The Homeland Protection and Air Traffic Control Division conducted an internal study to examine challenges to effective and efficient research software development, and to identify ways to strengthen both the culture and execution for greater impact on our mission. Key findings of this study fell into three main categories: project attributes that influence how software development activities must be conducted and managed, potential efficiencies from centralization, opportunities to improve staffing and culture with respect to software practitioners. The study delivered actionable recommendations, including centralizing and standardizing software support tooling, developing a common database to help match the right software talent and needs to projects, and creating a software stakeholder panel to assist with continued improvement.

cs.SE

Beyond saliency: enhancing explanation of speech emotion recognition with expert-referenced acoustic cues

Explainable AI (XAI) for Speech Emotion Recognition (SER) is critical for building transparent, trustworthy models. Current saliency-based methods, adapted from vision, highlight spectrogram regions but fail to show whether these regions correspond to meaningful acoustic markers of emotion, limiting faithfulness and interpretability. We propose a framework that overcomes these limitations by quantifying the magnitudes of cues within salient regions. This clarifies "what" is highlighted and connects it to "why" it matters, linking saliency to expert-referenced acoustic cues of speech emotions. Experiments on benchmark SER datasets show that our approach improves explanation quality by explicitly linking salient regions to theory-driven speech emotions expert-referenced acoustics. Compared to standard saliency methods, it provides more understandable and plausible explanations of SER models, offering a foundational step towards trustworthy speech-based affective computing.

cs.LG

Exploiting complex 3D-printed surface structures for portable quantum technologies

Portable quantum technologies require robust, lightweight apparatus with superior performance. For techniques dependent upon high-vacuum environments, such as atom interferometers and atomic clocks, 3D-printing enables new avenues to tailor in-vacuum gas propagation dynamics. We demonstrate intricate, fine-scale surface patterning of 3D-printed vacuum components to increase the rate at which gas particles collide with the surface. By applying a non-evaporable getter coating for use as a surface pump, we show that the patterned surface pumps gas particles 3.8 times faster than an equivalent flat areas. These patterns can be directly integrated into additively manufactured components, enabling application in close proximity to key experimental regions and contributing to overall mass-reduction. We develop numerical simulations that show good agreement with this result and predict up to a ten-fold increase in pumping rate, for realistic surface structures. Our work has direct applications in enabling passively-pumped portable quantum technologies, but also establishes 3D-printing as a powerful technique for the creation of optimized surface patterning to provide enhanced control over high-vacuum gas dynamics for a broad range of applications.

quant-ph

Deep Learning-based Alignment Measurement in Knee Radiographs

Radiographic knee alignment (KA) measurement is important for predicting joint health and surgical outcomes after total knee replacement. Traditional methods for KA measurements are manual, time-consuming and require long-leg radiographs. This study proposes a deep learning-based method to measure KA in anteroposterior knee radiographs via automatically localized knee anatomical landmarks. Our method builds on hourglass networks and incorporates an attention gate structure to enhance robustness and focus on key anatomical features. To our knowledge, this is the first deep learning-based method to localize over 100 knee anatomical landmarks to fully outline the knee shape while integrating KA measurements on both pre-operative and post-operative images. It provides highly accurate and reliable anatomical varus/valgus KA measurements using the anatomical tibiofemoral angle, achieving mean absolute differences ~1{\deg} when compared to clinical ground truth measurements. Agreement between automated and clinical measurements was excellent pre-operatively (intra-class correlation coefficient (ICC) = 0.97) and good post-operatively (ICC = 0.86). Our findings demonstrate that KA assessment can be automated with high accuracy, creating opportunities for digitally enhanced clinical workflows.

cs.CV

OpenGERT: Open Source Automated Geometry Extraction with Geometric and Electromagnetic Sensitivity Analyses for Ray-Tracing Propagation Models

Accurate RF propagation modeling in urban environments is critical for developing digital spectrum twins and optimizing wireless communication systems. We introduce OpenGERT, an open-source automated Geometry Extraction tool for Ray Tracing, which collects and processes terrain and building data from OpenStreetMap, Microsoft Global ML Building Footprints, and USGS elevation data. Using the Blender Python API, it creates detailed urban models for high-fidelity simulations with NVIDIA Sionna RT. We perform sensitivity analyses to examine how variations in building height, position, and electromagnetic material properties affect ray-tracing accuracy. Specifically, we present pairwise dispersion plots of channel statistics (path gain, mean excess delay, delay spread, link outage, and Rician K-factor) and investigate how their sensitivities change with distance from transmitters. We also visualize the variance of these statistics for selected transmitter locations to gain deeper insights. Our study covers Munich and Etoile scenes, each with 10 transmitter locations. For each location, we apply five types of perturbations: material, position, height, height-position, and all combined, with 50 perturbations each. Results show that small changes in permittivity and conductivity minimally affect channel statistics, whereas variations in building height and position significantly alter all statistics, even with noise standard deviations of 1 meter in height and 0.4 meters in position. These findings highlight the importance of precise environmental modeling for accurate propagation predictions, essential for digital spectrum twins and advanced communication networks. The code for geometry extraction and sensitivity analyses is available at github.com/serhatadik/OpenGERT/.

eess.SP

Adaptive, symmetry-informed Bayesian metrology for precise quantum technology measurements

High precision measurements are essential to solve major scientific and technological challenges, from gravitational wave detection to healthcare diagnostics. Quantum sensing delivers greater precision, but an in-depth optimisation of measurement procedures has been overlooked. Here we present a systematic strategy for parameter estimation in the low-data limit that integrates experimental control parameters and natural symmetries. The method is guided by a Bayesian quantifier of precision gain, enabling adaptive optimisation tailored to the experiment. We provide general expressions for optimal estimators for any parameter. The strategy's power is demonstrated in a quantum technology experiment, in which ultracold caesium atoms are confined in a micromachined hole in an optical fibre. We find a five-fold reduction in the fractional variance of the estimated parameter, compared to the standard measurement procedure. Equivalently, our strategy achieves a target precision with a third of the data points previously required. Such enhanced device performance and accelerated data collection will be essential for applications in quantum computing, communication, metrology, and the wider quantum technology sector.

quant-ph

Additive Manufacturing of functionalised atomic vapour cells for next-generation quantum technologies

Atomic vapour cells are an indispensable tool for quantum technologies (QT), but potential improvements are limited by the capacities of conventional manufacturing methods. Using an additive manufacturing (AM) technique - vat polymerisation by digital light processing - we demonstrate, for the first time, a 3D-printed glass vapour cell. The exploitation of AM capacities allows intricate internal architectures, overprinting of 2D optoelectronical materials to create integrated sensors and surface functionalisation, while also showing the ability to tailor the optical properties of the AM glass by in-situ growth of gold nanoparticles. The produced cells achieve ultra-high vacuum of $2 \times 10^{-9}$ mbar and enable Doppler-free spectroscopy; we demonstrate laser frequency stabilisation as a QT application. These results highlight the transformative role that AM can play for QT in enabling compact, optimised and integrated multi-material components and devices.

physics.atom-ph

Data Discovery for the SDGs: A Systematic Rule-based Approach

In 2015, the United Nations put forward 17 Sustainable Development Goals (SDGs) to be achieved by 2030, where data has been promoted as a focus to innovating sustainable development and as a means to measuring progress towards achieving the SDGs. In this study, we propose a systematic approach towards discovering data types and sources that can be used for SDG research. The proposed method integrates a systematic mapping approach using manual qualitative coding over a corpus of SDG-related research literature followed by an automated process that applies rules to perform data entity extraction computationally. This approach is exemplified by an analysis of literature relating to SDG 7, the results of which are also presented in this paper. The paper concludes with a discussion of the approach and suggests future work to extend the method with more advance NLP and machine learning techniques.

cs.IR

Bayesian inference for partial orders from random linear extensions: power relations from 12th Century Royal Acta

In the eleventh and twelfth centuries in England, Wales and Normandy, Royal Acta were legal documents in which witnesses were listed in order of social status. Any bishops present were listed as a group. For our purposes, each witness-list is an ordered permutation of bishop names with a known date or date-range. Changes over time in the order bishops are listed may reflect changes in their authority. Historians would like to detect and quantify these changes. There is no reason to assume that the underlying social order which constrains bishop-order within lists is a complete order. We therefore model the evolving social order as an evolving partial ordered set or {\it poset}. We construct a Hidden Markov Model for these data. The hidden state is an evolving poset (the evolving social hierarchy) and the emitted data are random total orders (dated lists) respecting the poset present at the time the order was observed. This generalises existing models for rank-order data such as Mallows and Plackett-Luce. We account for noise via a random ``queue-jumping'' process. Our latent-variable prior for the random process of posets is marginally consistent. A parameter controls poset depth and actor-covariates inform the position of actors in the hierarchy. We fit the model, estimate posets and find evidence for changes in status over time. We interpret our results in terms of court politics. Simpler models, based on Bucket Orders and vertex-series-parallel orders, are rejected. We compare our results with a time-series extension of the Plackett-Luce model. Our software is publicly available.

stat.ME

Autocorrelation, Wigner and Ambiguity Transforms on Polygons for Coherent Radiation Rendering

Simulating the radar illumination of large scenes generally relies on a geometric model of light transport which largely ignores prominent wave effects. This can be remedied through coherence ray-tracing, but this requires the Wigner transform of the aperture. This diffraction function has been historically difficult to generate, and is relevant in the fields of optics, holography, synchrotron-radiation, quantum systems and radar. In this paper we provide the Wigner transform of arbitrary polygons through geometric transforms and the Stokes Fourier transform; and display its use in Monte-Carlo rendering.

cs.RO

An Experience Report of Executive-Level Artificial Intelligence Education in the United Arab Emirates

Teaching artificial intelligence (AI) is challenging. It is a fast moving field and therefore difficult to keep people updated with the state-of-the-art. Educational offerings for students are ever increasing, beyond university degree programs where AI education traditionally lay. In this paper, we present an experience report of teaching an AI course to business executives in the United Arab Emirates (UAE). Rather than focusing only on theoretical and technical aspects, we developed a course that teaches AI with a view to enabling students to understand how to incorporate it into existing business processes. We present an overview of our course, curriculum and teaching methods, and we discuss our reflections on teaching adult learners, and to students in the UAE.

cs.CY

Dual-frequency Doppler-free spectroscopy for simultaneous laser stabilisation in compact atomic physics experiments

Vapour cell spectroscopy is an essential technique in many fields; in particular, nearly all atom and ion trapping experiments rely on simultaneous spectroscopy of two atomic transitions, traditionally employing separate apparatus for each transition. Here, we demonstrate simultaneous spectroscopy on two atomic transitions using spatially-overlapped beams from two independent lasers, within a single spectroscopic apparatus. We show that, in addition to aiding compactness, this approach offers superior performance, leading to sharper spectroscopy peaks and stronger absorption signals. Doppler-free locking features become visible over a frequency range several hundred MHz wider than for standard saturated absorption spectroscopy. By exploring the full, 2D parameter space associated with dual-frequency spectroscopy, we reveal a lattice-like structure of sharp resonance features in 2D frequency space, which enhances experimental versatility by allowing laser frequency stabilisation anywhere within a wide manifold of locations in 2D frequency space. The process of simultaneous frequency stabilisation of two lasers is analysed in detail, revealing that it can be expected to produce significant improvements in laser stability when compared to conventional, single-frequency spectroscopy.

physics.atom-ph

Decentralised Intelligence, Surveillance, and Reconnaissance in Unknown Environments with Heterogeneous Multi-Robot Systems

We present the design and implementation of a decentralised, heterogeneous multi-robot system for performing intelligence, surveillance and reconnaissance (ISR) in an unknown environment. The team consists of functionally specialised robots that gather information and others that perform a mission-specific task, and is coordinated to achieve simultaneous exploration and exploitation in the unknown environment. We present a practical implementation of such a system, including decentralised inter-robot localisation, mapping, data fusion and coordination. The system is demonstrated in an efficient distributed simulation. We also describe an UAS platform for hardware experiments, and the ongoing progress.

cs.RO

An Upper Confidence Bound for Simultaneous Exploration and Exploitation in Heterogeneous Multi-Robot Systems

Heterogeneous multi-robot systems are advantageous for operations in unknown environments because functionally specialised robots can gather environmental information, while others perform tasks. We define this decomposition as the scout-task robot architecture and show how it avoids the need to explicitly balance exploration and exploitation~by permitting the system to do both simultaneously. The challenge is to guide exploration in a way that improves overall performance for time-limited tasks. We derive a novel upper confidence bound for simultaneous exploration and exploitation based on mutual information and present a general solution for scout-task coordination using decentralised Monte Carlo tree search. We evaluate the performance of our algorithms in a multi-drone surveillance scenario in which scout robots are equipped with low-resolution, long-range sensors and task robots capture detailed information using short-range sensors. The results address a new class of coordination problem for heterogeneous teams that has many practical applications.

cs.RO

Fast fourier transform and multi-Gaussian fitting of XRR data to determine the thickness of ALD grown thin films within the initial growth regime

While a linear growth behavior is one of the fingerprints of textbook atomic layer deposition processes, the growth often deviates from that behavior in the initial regime, i.e. the first few cycles of a process. To properly understand the growth behavior in the initial regime is particularly important for applications that rely on the exact thickness of very thin films. The determination of the thicknesses of the initial regime, however, often requires special equipment and techniques that are not always available. We propose a thickness determination method that is based on X-ray reflectivity (XRR) measurements on double layer structures, i.e. substrate/base layer/top layer. XRR is a standard thin film characterization method. Utilizing the inherent properties of fast Fourier transformation in combination with a multi-Gaussian fitting routine permits the determination of thicknesses down to $t \approx 2$ nm. We evaluate the boundaries of our model, which are given by the separation and full width at half maximum of the individual Gaussians. Finally, we compare our results from two layer stacks with data from X-ray fluorescence spectroscopy, which is a standard method for measuring ultra thin films.

cond-mat.mtrl-sci

Multiple Imputation with Massive Data: An Application to the Panel Study of Income Dynamics

\Multiple imputation (MI) is a popular and well-established method for handling missing data in multivariate data sets, but its practicality for use in massive and complex data sets has been questioned. One such data set is the Panel Study of Income Dynamics (PSID), a longstanding and extensive survey of household income and wealth in the U.S. Missing data for this survey are currently handled using traditional hot deck methods because of the simple implementation; however, the univariate hot deck results in large random wealth fluctuations. MI is effective but faced with operational challenges. We use a sequential regression/ chained-equation approach, using the software IVEware, to multiply impute cross-sectional wealth data in the 2013 PSID, and compare analyses of the resulting imputed data with those from the current hot deck approach. Practical difficulties, such as non-normally distributed variables, skip patterns, categorical variables with many levels, and multicollinearity, are described together with our approaches to overcoming them. We evaluate the imputation quality and validity with internal diagnostics and external benchmarking data. MI produces improvements over the existing hot deck approach by helping preserve correlation structures, such as the associations between PSID wealth components and the relationships between the household net worth and socio-demographic factors, and facilitates completed data analyses with general purposes. MI incorporates highly predictive covariates into imputation models and increases efficiency. We recommend the practical implementation of MI and expect greater gains when the fraction of missing information is large.

stat.ME