David Linke | Searcharxiv

arXiv2026

ChemDCAT-AP: Enabling Semantic Interoperability with a Contextual Extension of DCAT-AP

Cross-domain data integration drives interdisciplinary data reuse and knowledge transfer across domains. However, each discipline maintains its own metadata schemas and domain ontologies, employing distinct conceptual models and application profiles, which complicates semantic interoperability. The W3C Data Catalog Vocabulary (DCAT) offers a widely adopted RDF vocabulary for describing datasets and their distributions, but its core model is intentionally lightweight. Numerous domain-specific application profiles have emerged to enrich DCAT's expressivity, the most well-known DCAT-AP for public data. To facilitate cross-domain interoperability for research data, we propose DCAT-AP PLUS, a DCAT Application Profile (P)roviding additional (L)inks to (U)se-case (S)pecific context (DCAT-AP+). This generic application profile enables a comprehensive representation of the provenance and context of research data generation. DACT-AP+ introduces an upper-level layer that can be specialized by individual domains without sacrificing compatibility. We demonstrate the application of DCAT-AP+ and a specific profile ChemDCAT-AP to showcase the potential of data integration of the neighboring disciplines chemistry and catalysis. We adopt LinkML, a YAML-based modeling framework, to support schema inheritance, generate domain-specific subschemas, and provide mechanisms for data type harmonization, validation, and format conversion, ensuring smooth integration of DCAT-AP+ and ChemDCAT-AP within existing data infrastructures.

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arXiv2025

LinkML: An Open Data Modeling Framework

Scientific research relies on well-structured, standardized data; however, much of it is stored in formats such as free-text lab notebooks, non-standardized spreadsheets, or data repositories. This lack of structure challenges interoperability, making data integration, validation, and reuse difficult. LinkML (Linked Data Modeling Language) is an open framework that simplifies the process of authoring, validating, and sharing data. LinkML can describe a range of data structures, from flat, list-based models to complex, interrelated, and normalized models that utilize polymorphism and compound inheritance. It offers an approachable syntax that is not tied to any one technical architecture and can be integrated seamlessly with many existing frameworks. The LinkML syntax provides a standard way to describe schemas, classes, and relationships, allowing modelers to build well-defined, stable, and optionally ontology-aligned data structures. Once defined, LinkML schemas may be imported into other LinkML schemas. These key features make LinkML an accessible platform for interdisciplinary collaboration and a reliable way to define and share data semantics. LinkML helps reduce heterogeneity, complexity, and the proliferation of single-use data models while simultaneously enabling compliance with FAIR data standards. LinkML has seen increasing adoption in various fields, including biology, chemistry, biomedicine, microbiome research, finance, electrical engineering, transportation, and commercial software development. In short, LinkML makes implicit models explicitly computable and allows data to be standardized at its origin. LinkML documentation and code are available at linkml.io.

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