arXiv subjects

David Moffat

Publications and source records attributed to David Moffat.

6 recordsLinked to original sources

arXiv2026

Beyond chlorophyll: machine learning estimates of diagnostic phytoplankton pigments from multispectral ocean colour data

Phytoplankton play a central role in marine ecosystems and the global carbon cycle, with different groups contributing differently to ocean biogeochemical processes. While standard techniques exist for monitoring phytoplankton concentration from ocean-colour data, their community composition remains difficult to observe at large scales. Chlorophyll-a, widely available from satellite ocean-colour observations, is commonly used as a measure of phytoplankton biomass but provides limited information on taxonomic composition. Accessory pigments, some of which are diagnostic of important phytoplankton groups, offer additional information on community structure, but their retrieval from ocean-colour data is challenging because of limited spectral resolution and strong covariance with chlorophyll-a. In this study, we evaluate machine learning methods for estimating diagnostic pigment concentrations from multispectral satellite observations. Using a global dataset of 33,640 High Performance Liquid Chromatography (HPLC) measurements matched with ESA Ocean Colour Climate Change Initiative (OC-CCI) reflectance data, we compare Random Forest and TabPFN models trained on multispectral reflectance with baseline models using chlorophyll-a alone. A temporally stratified validation scheme is employed to reduce the effects of autocorrelation. Results show that multispectral models consistently outperform approaches based solely on satellite-derived chlorophyll-a, demonstrating that ocean-colour reflectance contains additional information relevant to pigment discrimination. Improvements vary by pigment, with those strongly correlated with chlorophyll-a showing limited gains, while others exhibit substantial improvement. These findings highlight the potential of machine learning to extract ecologically relevant information from satellite data beyond conventional chlorophyll-based approaches.

q-bio.OT↗

arXiv2026

Deep learning model emulators for marine biogeochemistry forecasting from days to decades

Deep-learning emulators have emerged as a promising approach for reducing the computational cost of Earth System Models while potentially improving forecasting skill. Here, we demonstrate the successful emulation of a high-complexity marine biogeochemistry model within a simplified one-dimensional water-column framework. We explore two emulator architectures: Long Short-Term Memory (LSTM) neural networks that emulate a selected subset of variables at daily resolution, and physics-informed one-dimensional Convolutional Neural Networks (1D CNNs) that emulate the full pelagic system throughout the water column also at daily resolution. Using ocean physics simulator inputs, both emulators remain largely stable over multi-decadal timescales and accurately reproduce the parent model in both decadal climate projections and short-range (10-day) forecasting applications. The former includes the ability to predict the timing of phytoplankton Spring blooms several years in advance. When trained on reanalysis data, the emulators substantially outperform the parent model's forecast skill score for several key ecosystem variables, including phytoplankton and zooplankton. If similar performance can be achieved in three-dimensional regional applications, these emulators could provide substantially higher-quality predictions at a fraction of the computational cost. We further apply novel explainability techniques to identify key drivers of emulator behaviour and gain insights into emergent ecosystem dynamics. Performance is evaluated using a range of metrics, including the reproduction of daily variability and extreme events. These approaches have considerable potential for future applications in operational forecasting, climate-scale simulations, and marine autonomous systems.

q-bio.QM↗

arXiv2025

A Sentinel-3 foundation model for ocean colour

Artificial Intelligence (AI) Foundation models (FMs), pre-trained on massive unlabelled datasets, have the potential to drastically change AI applications in ocean science, where labelled data are often sparse and expensive to collect. In this work, we describe a new foundation model using the Prithvi-EO Vision Transformer architecture which has been pre-trained to reconstruct data from the Sentinel-3 Ocean and Land Colour Instrument (OLCI). We evaluate the model by fine-tuning on two downstream marine earth observation tasks. We first assess model performance compared to current baseline models used to quantify chlorophyll concentration. We then evaluate the FMs ability to refine remote sensing-based estimates of ocean primary production. Our results demonstrate the utility of self-trained FMs for marine monitoring, in particular for making use of small amounts of high quality labelled data and in capturing detailed spatial patterns of ocean colour whilst matching point observations. We conclude that this new generation of geospatial AI models has the potential to provide more robust, data-driven insights into ocean ecosystems and their role in global climate processes.

cs.CV↗

arXiv2022

Word Embeddings for Automatic Equalization in Audio Mixing

In recent years, machine learning has been widely adopted to automate the audio mixing process. Automatic mixing systems have been applied to various audio effects such as gain-adjustment, equalization, and reverberation. These systems can be controlled through visual interfaces, providing audio examples, using knobs, and semantic descriptors. Using semantic descriptors or textual information to control these systems is an effective way for artists to communicate their creative goals. In this paper, we explore the novel idea of using word embeddings to represent semantic descriptors. Word embeddings are generally obtained by training neural networks on large corpora of written text. These embeddings serve as the input layer of the neural network to create a translation from words to EQ settings. Using this technique, the machine learning model can also generate EQ settings for semantic descriptors that it has not seen before. We compare the EQ settings of humans with the predictions of the neural network to evaluate the quality of predictions. The results showed that the embedding layer enables the neural network to understand semantic descriptors. We observed that the models with embedding layers perform better than those without embedding layers, but still not as good as human labels.

cs.SD↗

arXiv2021

You Only Hear Once: A YOLO-like Algorithm for Audio Segmentation and Sound Event Detection

Audio segmentation and sound event detection are crucial topics in machine listening that aim to detect acoustic classes and their respective boundaries. It is useful for audio-content analysis, speech recognition, audio-indexing, and music information retrieval. In recent years, most research articles adopt segmentation-by-classification. This technique divides audio into small frames and individually performs classification on these frames. In this paper, we present a novel approach called You Only Hear Once (YOHO), which is inspired by the YOLO algorithm popularly adopted in Computer Vision. We convert the detection of acoustic boundaries into a regression problem instead of frame-based classification. This is done by having separate output neurons to detect the presence of an audio class and predict its start and end points. The relative improvement for F-measure of YOHO, compared to the state-of-the-art Convolutional Recurrent Neural Network, ranged from 1% to 6% across multiple datasets for audio segmentation and sound event detection. As the output of YOHO is more end-to-end and has fewer neurons to predict, the speed of inference is at least 6 times faster than segmentation-by-classification. In addition, as this approach predicts acoustic boundaries directly, the post-processing and smoothing is about 7 times faster.

eess.AS↗

arXiv2021

Artificially Synthesising Data for Audio Classification and Segmentation to Improve Speech and Music Detection in Radio Broadcast

Segmenting audio into homogeneous sections such as music and speech helps us understand the content of audio. It is useful as a pre-processing step to index, store, and modify audio recordings, radio broadcasts and TV programmes. Deep learning models for segmentation are generally trained on copyrighted material, which cannot be shared. Annotating these datasets is time-consuming and expensive and therefore, it significantly slows down research progress. In this study, we present a novel procedure that artificially synthesises data that resembles radio signals. We replicate the workflow of a radio DJ in mixing audio and investigate parameters like fade curves and audio ducking. We trained a Convolutional Recurrent Neural Network (CRNN) on this synthesised data and outperformed state-of-the-art algorithms for music-speech detection. This paper demonstrates the data synthesis procedure as a highly effective technique to generate large datasets to train deep neural networks for audio segmentation.

eess.AS↗