arXiv subjects

David R. Nelson

Publications and source records attributed to David R. Nelson.

At least 127 records · Page 7Linked to original sources

arXiv2001

Hexatic Order and Surface Ripples in Spherical Geometries

In flat geometries, two dimensional hexatic order has only a minor effect on capillary waves on a liquid substrate and on undulation modes in lipid bilayers. However, extended bond orientational order alters the long wavelength spectrum of these ripples in spherical geometries. We calculate this frequency shift and suggest that it might be detectable in lipid bilayer vesicles, at the surface of liquid metals and in multielectron bubbles in liquid helium at low temperatures. Hexatic order also leads to a shift in the threshold for the fission instability induced in the later two systems by an excess of electric charge.

cond-mat.soft↗

arXiv2001

Single Molecule Statistics and the Polynucleotide Unzipping Transition

We present an extensive theoretical investigation of the mechanical unzipping of double-stranded DNA under the influence of an applied force. In the limit of long polymers, there is a thermodynamic unzipping transition at a critical force value of order 10 pN, with different critical behavior for homopolymers and for random heteropolymers. We extend results on the disorder-averaged behavior of DNA's with random sequences to the more experimentally accessible problem of unzipping a single DNA molecule. As the applied force approaches the critical value, the double-stranded DNA unravels in a series of discrete, sequence-dependent steps that allow it to reach successively deeper energy minima. Plots of extension versus force thus take the striking form of a series of plateaus separated by sharp jumps. Similar qualitative features should reappear in micromanipulation experiments on proteins and on folded RNA molecules. Despite their unusual form, the extension versus force curves for single molecules still reveal remnants of the disorder-averaged critical behavior. Above the transition, the dynamics of the unzipping fork is related to that of a particle diffusing in a random force field; anomalous, disorder-dominated behavior is expected until the applied force exceeds the critical value for unzipping by roughly 5 pN.

cond-mat.soft↗

arXiv2001

Interaction effects in non-Hermitian models of vortex physics

Vortex lines in superconductors in an external magnetic field slightly tilted from randomly-distributed parallel columnar defects can be modeled by a system of interacting bosons in a non-Hermitian vector potential and a random scalar potential. We develop a theory of the strongly-disordered non-Hermitian boson Hubbard model using the Hartree-Bogoliubov approximation and apply it to calculate the complex energy spectra, the vortex tilt angle and the tilt modulus of (1+1)-dimensional directed flux line systems. We construct the phase diagram associated with the flux-liquid to Bose-glass transition and find that, close to the phase boundary, the tilted flux liquid phase is characterized by a band of localized excitations, with two mobility edges in its low-energy spectrum.

cond-mat.supr-con↗

arXiv2001

Vortex wandering in a forest of splayed columnar defects

We investigate the scaling properties of single flux lines in a random pinning landscape consisting of splayed columnar defects. Such correlated defects can be injected into Type II superconductors by inducing nuclear fission or via direct heavy ion irradiation. The result is often very efficient pinning of the vortices which gives, e.g., a strongly enhanced critical current. The wandering exponent ζand the free energy exponent ωof a single flux line in such a disordered environment are obtained analytically from scaling arguments combined with extreme-value statistics. In contrast to the case of point disorder, where these exponents are universal, we find a dependence of the exponents on details in the probability distribution of the low lying energies of the columnar defects. The analytical results show excellent agreement with numerical transfer matrix calculations in two and three dimensions.

cond-mat.supr-con↗

arXiv2000

Novel Phases and Reentrant Melting of Two Dimensional Colloidal Crystals

We investigate two-dimensional (2d) melting in the presence of a one-dimensional (1d) periodic potential as, for example, realized in recent experiments on 2d colloids subjected to two interfering laser beams. The topology of the phase diagram is found to depend primarily on two factors: the relative orientation of the 2d crystal and the periodic potential troughs, which select a set of Bragg planes running parallel to the troughs, and the commensurability ratio p= a'/d of the spacing a' between these Bragg planes to the period d of the periodic potential. The complexity of the phase diagram increases with the magnitude of the commensurabilty ratio p. Rich phase diagram, with ``modulated liquid'', ``floating'' and ``locked floating'' solid and smectic phases are found. Phase transitions between these phases fall into two broad universality classes, roughening and melting, driven by the proliferation of discommensuration walls and dislocations, respectively. We discuss correlation functions and the static structure factor in these phases and make detailed predictions of the universal features close to the phase boundaries. We predict that for charged systems with highly screened short-range interactions these melting transitions are generically reentrant as a function of the strength of the periodic potential, prediction that is in accord with recent 2d colloid experiments. Implications of our results for future experiments are also discussed.

cond-mat.soft↗

arXiv2000

Pulling Pinned Polymers and Unzipping DNA

We study a class of micromanipulation experiments, exemplified by the pulling apart of the two strands of double-stranded DNA (dsDNA). When the pulling force is increased to a critical value, an ``unzipping'' transition occurs. For random DNA sequences with short-ranged correlations, we obtain exact results for the number of monomers liberated and the specific heat, including the critical behavior at the transition. Related systems include a random heteropolymer pulled away from an adsorbing surface and a vortex line in a type II superconductor tilted away from a fragmented columnar defect.

cond-mat.soft↗

arXiv1999

Interacting Topological Defects on Frozen Topographies

We propose and analyze an effective free energy describing the physics of disclination defects in particle arrays constrained to move on an arbitrary two-dimensional surface. At finite temperature the physics of interacting disclinations is mapped to a Laplacian Sine-Gordon Hamiltonian suitable for numerical simulations. We then specialize to the case of a spherical crystal at zero temperature. The ground state is analyzed as a function of the ratio of the defect core energy to the Young's modulus. We argue that the core energy contribution becomes less and less important in the limit R >> a, where R is the radius of the sphere and a is the particle spacing. For large core energies there are twelve disclinations forming an icosahedron. For intermediate core energies unusual finite-length grain boundaries are preferred. The complicated regime of small core energies, appropriate to the limit R/a goes to infinity, is also addressed. Finally we discuss the application of our results to the classic Thomson problem of finding the ground state of electrons distributed on a two-sphere.

cond-mat.stat-mech↗

arXiv1999

Vortex Physics in Confined Geometries

Patterned irradiation of cuprate superconductors with columnar defects allows a new generation of experiments which can probe the properties of vortex liquids by forcing them to flow in confined geometries. Such experiments can be used to distinguish experimentally between continuous disorder-driven glass transitions of vortex matter, such as the vortex glass or the Bose glass transition, and nonequilibrium polymer-like glass transitions driven by interaction and entanglement. For continuous glass transitions, an analysis of such experiments that combines an inhomogeneous scaling theory with the hydrodynamic description of viscous flow of vortex liquids can be used to infer the critical behavior. After generalizing vortex hydrodynamics to incorporate currents and field gradients both longitudinal and transverse to the applied field, the critical exponents for all six vortex liquid viscosities are obtained. In particular, the shear viscosity is predicted to diverge as $|T-T_{BG}|^{-νz}$ at the Bose glass transition, with $ν\simeq 1$ and $z\simeq 4.6$ the dynamical critical exponent. The scaling behavior of the ac resistivity is also derived. As concrete examples of flux flow in confined geometries, flow in a channel and in the Corbino disk geometry are discussed in detail. Finally, the implications of scaling for the hydrodynamic description of transport in the dc flux transformer geometry are discussed.

cond-mat.supr-con↗

arXiv1999

B(H) Constitutive Relations Near H_c1 in Disordered Superconductors

We provide a self-contained account of the B vs. H constitutive relation near H_c1 in Type II superconductors with various types of quenched random disorder. The traditional Abrikosov result B ~ [ln (H - H_c1)]^{-2}, valid in the absence of disorder and thermal fluctuations, changes significantly in the presence of disorder. Moreover, the constitutive relations will depend strongly on the type of disorder. In the presence of point disorder, B ~ (H - H_c1)^{3/2} in three-dimensional (thick) superconductors, as shown by Nattermann and Lipowsky. In two-dimensional (thin film) superconductors with point disorder, B ~ (H - H_c1). In the presence of parallel columnar disorder, we find that B ~ exp[-C / (H - H_c1)] in three dimensions, while B ~ exp[-K / (H - H_c1)^{1/2}] in two dimensions. In the presence of nearly isotropically splayed disorder, we find that B ~ (H - H_c1)^{3/2} in both two and three dimensions.

cond-mat.supr-con↗

arXiv1999

Channel Flow of Smectic Films

The hydrodynamics of smectic films at an air-water interface is discussed, with particular focus on the viscous response of the film under flow normal to the layers. The corrections to the response functions of the smectic phase, arising from the coupling between the flow and the smectic order parameter, are calculated. The results for the effective viscosity are illustrated by analysing smectic film flow in a channel geometry. Two limiting cases of the flow, namely, motion dominated by dislocation-induced shear-softening and dislocation-free motion dominated by the permeation mode of mass transfer, are studied. The effect of drag from a finite depth liquid subphase is considered. The results are compared to those for hexatic and liquid films.

cond-mat.soft↗

arXiv1999

Light Induced Melting of Colloidal Crystals in Two Dimensions

We demonstrate that particles confined to two dimensions (2d) and subjected to a one-dimensional (1d) periodic potential exhibit a rich phase diagram, with both ``locked floating solids'' and smectic phases. The resulting phases and phase transitions are studied as a function of temperature and potential strength. We find reentrant melting as a function of the potential strength. Our results lead to universal predictions consistent with recent experiments on 2d colloids in the presence of a laser-induced 1d periodic potential.

cond-mat.soft↗

arXiv1999

Statistical Mechanics of Vacancy and Interstitial Strings in Hexagonal Columnar Crystals

Columnar crystals contain defects in the form of vacancy/interstitial loops or strings of vacancies and interstitials bounded by column ``heads'' and ``tails''. These defect strings are oriented by the columnar lattice and can change size and shape by movement of the ends and forming kinks along the length. Hence an analysis in terms of directed living polymers is appropriate to study their size and shape distribution, volume fraction, etc. If the entropy of transverse fluctuations overcomes the string line tension in the crystalline phase, a string proliferation transition occurs, leading to a supersolid phase. We estimate the wandering entropy and examine the behaviour in the transition regime. We also calculate numerically the line tension of various species of vacancies and interstitials in a triangular lattice for power-law potentials as well as for a modified Bessel function interaction between columns as occurs in the case of flux lines in type-II superconductors or long polyelectrolytes in an ionic solution. We find that the centered interstitial is the lowest energy defect for a very wide range of interactions; the symmetric vacancy is preferred only for extremely short interaction ranges.

cond-mat.soft↗

arXiv1999

Population Dynamics and Non-Hermitian Localization

We review localization with non-Hermitian time evolution as applied to simple models of population biology with spatially varying growth profiles and convection. Convection leads to a constant imaginary vector potential in the Schroedinger-like operator which appears in linearized growth models. We illustrate the basic ideas by reviewing how convection affects the evolution of a population influenced by a simple square well growth profile. Results from discrete lattice growth models in both one and two dimensions are presented. A set of similarity transformations which lead to exact results for the spectrum and winding numbers of eigenfunctions for random growth rates in one dimension is described in detail. We discuss the influence of boundary conditions, and argue that periodic boundary conditions lead to results which are in fact typical of a broad class of growth problems with convection.

cond-mat.dis-nn↗

arXiv1999

Driven Polymer Translocation Through a Narrow Pore

Motivated by experiments in which a polynucleotide is driven through a proteinaceous pore by an electric field, we study the diffusive motion of a polymer threaded through a narrow channel with which it may have strong interactions. We show that there is a range of polymer lengths in which the system is approximately translationally invariant, and we develop a coarse-grained description of this regime. From this description, general features of the distribution of times for the polymer to pass through the pore may be deduced. We also introduce a more microscopic model. This model provides a physically reasonable scenario in which, as in experiments, the polymer's speed depends sensitively on its chemical composition, and even on its orientation in the channel. Finally, we point out that the experimental distribution of times for the polymer to pass through the pore is much broader than expected from simple estimates, and speculate on why this might be.

physics.bio-ph↗

arXiv1999

Patterned Geometries and Hydrodynamics at the Vortex Bose Glass Transition

Patterned irradiation of cuprate superconductors with columnar defects allows a new generation of experiments which can probe the properties of vortex liquids by confining them to controlled geometries. Here we show that an analysis of such experiments that combines an inhomogeneous Bose glass scaling theory with the hydrodynamic description of viscous flow of vortex liquids can be used to infer the critical behavior near the Bose glass transition. The shear viscosity is predicted to diverge as $|T-T_{BG}|^{-z}$ at the Bose glass transition, with $z\simeq 6$ the dynamical critical exponent.

cond-mat.supr-con↗

arXiv1998

Vortex Pinning and the Non-Hermitian Mott Transition

The boson Hubbard model has been extensively studied as a model of the zero temperature superfluid/insulator transition in Helium-4 on periodic substrates. It can also serve as a model for vortex lines in superconductors with a magnetic field parallel to a periodic array of columnar pins, due to a formal analogy between the vortex lines and the statistical mechanics of quantum bosons. When the magnetic field has a component perpendicular to the pins, this analogy yields a non-Hermitian boson Hubbard model. At integer filling, we find that for small transverse fields, the insulating phase is preserved, and the transverse field is exponentially screened away from the boundaries of the superconductor. At larger transverse fields, a ``superfluid'' phase of tilted, entangled vortices appears. The universality class of the transition is found to be that of vortex lines entering the Meissner phase at H_{c1}, with the additional feature that the direction of the tilted vortices at the transition bears a non-trivial relationship to the direction of the applied magnetic field. The properties of the Mott Insulator and flux liquid phases with tilt are also discussed.

cond-mat.stat-mech↗

arXiv1998

Life and Death near a Windy Oasis

We propose a simple experiment to study delocalization and extinction in inhomogeneous biological systems. The nonlinear steady state for, say, a bacteria colony living on and near a patch of nutrient or favorable illumination (``oasis'') in the presence of a drift term (``wind'') is computed. The bacteria, described by a simple generalization of the Fisher equation, diffuse, divide A -> A+A, die A -> 0, and annihilate A+A -> 0. At high wind velocities all bacteria are blown into an unfavorable region (``desert''), and the colony dies out. At low velocity a steady state concentration survives near the oasis. In between these two regimes there is a critical velocity at which bacteria first survive. If the ``desert'' supports a small nonzero population, this extinction transition is replaced by a delocalization transition with increasing velocity. Predictions for the behavior as a function of wind velocity are made for one and two dimensions.

cond-mat.dis-nn↗

arXiv1998

Non-Hermitian Delocalization and Eigenfunctions

Recent literature on delocalization in non-Hermitian systems has stressed criteria based on sensitivity of eigenvalues to boundary conditions and the existence of a non-zero current. We emphasize here that delocalization also shows up clearly in eigenfunctions, provided one studies the product of left- and right-eigenfunctions, as required on physical grounds, and not simply the squared modulii of the eigenfunctions themselves. We also discuss the right- and left-eigenfunctions of the ground state in the delocalized regime and suggest that the behavior of these functions, when considered separately, may be viewed as ``intermediate'' between localized and delocalized.

cond-mat.stat-mech↗