David R. Penas | Searcharxiv

arXiv2025

Parameter estimation in ODEs: assessing the potential of local and global solvers

We consider the problem of parameter estimation in dynamic systems described by ordinary differential equations. A review of the existing literature emphasizes the need for deterministic global optimization methods due to the nonconvex nature of these problems. Recent works have focused on expanding the capabilities of specialized deterministic global optimization algorithms to handle more complex problems. Despite advancements, current deterministic methods are limited to problems with a maximum of around five state and five decision variables, prompting ongoing efforts to enhance their applicability to practical problems. Our study seeks to assess the effectiveness of state-of-the-art general-purpose global and local solvers in handling realistic-sized problems efficiently, and evaluating their capabilities to cope with the nonconvex nature of the underlying estimation problems.

math.OC↗

arXiv2023

Testing for genetic interactions in complex disease with distance correlation

Understanding epistasis (genetic interaction) may shed some light on the genomic basis of common diseases, including disorders of maximum interest due to their high socioeconomic burden, like schizophrenia. Distance correlation is an association measure that characterises general statistical independence between random variables, not only the linear one. Here, we propose distance correlation as a novel tool for the detection of epistasis from case-control data of single-nucleotide polymorphisms (SNPs). On the methodological side, we highlight the derivation of the explicit asymptotic distribution of the test statistic. We show that this is the only way to obtain enough computational speed for the method to be used in practice, in a scenario where the resampling techniques found in the literature are impractical. Our simulations show satisfactory calibration of significance, as well as comparable or better power than existing methodology. We conclude with the application of our technique to a schizophrenia genetics dataset, obtaining biologically sound insights.

math.ST↗