arXiv subjects

David Shotton

Publications and source records attributed to David Shotton.

7 recordsLinked to original sources

arXiv2023

OpenCitations Meta

OpenCitations Meta is a new database for open bibliographic metadata of scholarly publications involved in the citations indexed by the OpenCitations infrastructure, adhering to Open Science principles and published under a CC0 license to promote maximum reuse. It presently incorporates bibliographic metadata for publications recorded in Crossref, DataCite and PubMed, making it the largest bibliographic metadata source using Semantic Web technologies. It assigns new globally persistent identifiers (PIDs), known as OpenCitations Meta Identifiers (OMIDs) to all bibliographic resources, enabling it both to disambiguate publications described using different external PIDS (e.g., a DOI in Crossref and a PMID in PubMed), and to handle citations involving publications lacking external PIDs. By hosting bibliographic metadata internally, OpenCitations Meta eliminates its former reliance on API calls to external resources and thus enhances performance in response to user queries. Its automated data curation, following the OpenCitations Data Model, includes deduplication, error correction, metadata enrichment and full provenance tracking, ensuring transparency and traceability of data and bolstering confidence in data integrity, a feature unparalleled in other bibliographic databases. Its commitment to Semantic Web standards ensures superior interoperability compared to other machine-readable formats, with availability via a SPARQL endpoint, REST APIs and data dumps.

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arXiv2022

OpenCitations, an open e-infrastructure to foster maximum reuse of citation data

OpenCitations is an independent not-for-profit infrastructure organization for open scholarship dedicated to the publication of open bibliographic and citation data by the use of Semantic Web (Linked Data) technologies. OpenCitations collaborates with projects that are part of the Open Science ecosystem and complies with the UNESCO founding principles of Open Science, the I4OC recommendations, and the FAIR data principles that data should be Findable, Accessible, Interoperable and Reusable. Since its data satisfies all the Reuse guidelines provided by FAIR in terms of richness, provenance, usage licenses and domain-relevant community standards, OpenCitations provides an example of a successful open e-infrastructure in which the reusability of data is integral to its mission.

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arXiv2021

Creating RESTful APIs over SPARQL endpoints using RAMOSE

Semantic Web technologies are widely used for storing RDF data and making them available on the Web through SPARQL endpoints, queryable using the SPARQL query language. While the use of SPARQL endpoints is strongly supported by Semantic Web experts, it hinders broader use of RDF data by common Web users, engineers and developers unfamiliar with Semantic Web technologies, who normally rely on Web RESTful APIs for querying Web-available data and creating applications over them. To solve this problem, we have developed RAMOSE, a generic tool developed in Python to create REST APIs over SPARQL endpoints. Through the creation of source-specific textual configuration files, RAMOSE enables the querying of SPARQL endpoints via simple Web RESTful API calls that return either JSON or CSV-formatted data, thus hiding all the intrinsic complexities of SPARQL and RDF from common Web users. We provide evidence that the use of RAMOSE to provide REST API access to RDF data within OpenCitations triplestores is beneficial in terms of the number of queries made by external users to such RDF data using the RAMOSE API compared with the direct access via the SPARQL endpoint. Our findings show the importance for suppliers of RDF data of having an alternative API access service, which enables its use by those with no (or little) experience in Semantic Web technologies and the SPARQL query language. RAMOSE can be used both to query any SPARQL endpoint and to query any other Web API, and thus it represents an easy generic technical solution for service providers who wish to create an API service to access Linked Data stored as RDF in a conventional triplestore.

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arXiv2020

The OpenCitations Data Model

A variety of schemas and ontologies are currently used for the machine-readable description of bibliographic entities and citations. This diversity, and the reuse of the same ontology terms with different nuances, generates inconsistencies in data. Adoption of a single data model would facilitate data integration tasks regardless of the data supplier or context application. In this paper we present the OpenCitations Data Model (OCDM), a generic data model for describing bibliographic entities and citations, developed using Semantic Web technologies. We also evaluate the effective reusability of OCDM according to ontology evaluation practices, mention existing users of OCDM, and discuss the use and impact of OCDM in the wider open science community.

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arXiv2019

OpenCitations, an infrastructure organization for open scholarship

OpenCitations is an infrastructure organization for open scholarship dedicated to the publication of open citation data as Linked Open Data using Semantic Web technologies, thereby providing a disruptive alternative to traditional proprietary citation indexes. Open citation data are valuable for bibliometric analysis, increasing the reproducibility of large-scale analyses by enabling publication of the source data. Following brief introductions to the development and benefits of open scholarship and to Semantic Web technologies, this paper describes OpenCitations and its datasets, tools, services and activities. These include the OpenCitations Data Model; the SPAR (Semantic Publishing and Referencing) Ontologies; OpenCitations' open software of generic applicability for searching, browsing and providing REST APIs over RDF triplestores; Open Citation Identifiers (OCIs) and the OpenCitations OCI Resolution Service; the OpenCitations Corpus (OCC), a database of open downloadable bibliographic and citation data made available in RDF under a Creative Commons public domain dedication; and the OpenCitations Indexes of open citation data, of which the first and largest is COCI, the OpenCitations Index of Crossref Open DOI-to-DOI Citations, which currently contains over 445 million bibliographic citations and is receiving considerable usage by the scholarly community.

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arXiv2019

COCI, the OpenCitations Index of Crossref open DOI-to-DOI citations

In this paper, we present COCI, the OpenCitations Index of Crossref open DOI-to-DOI citations (http://opencitations.net/index/coci). COCI is the first open citation index created by OpenCitations, in which we have applied the concept of citations as first-class data entities, and it contains more than 445 million DOI-to-DOI citation links derived from the data available in Crossref. These citations are described in RDF by means of the newly extended version of the OpenCitations Data Model (OCDM). We introduce the workflow we have developed for creating these data, and also show the additional services that facilitate the access to and querying of these data via different access points: a SPARQL endpoint, a REST API, bulk downloads, Web interfaces, and direct access to the citations via HTTP content negotiation. Finally, we present statistics regarding the use of COCI citation data, and we introduce several projects that have already started to use COCI data for different purposes.

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arXiv2019

Crowdsourcing open citations with CROCI -- An analysis of the current status of open citations, and a proposal

In this paper, we analyse the current availability of open citations data in one particular dataset, namely COCI (the OpenCitations Index of Crossref open DOI-to-DOI citations; http://opencitations.net/index/coci) provided by OpenCitations. The results of these analyses show a persistent gap in the coverage of the currently available open citation data. In order to address this specific issue, we propose a strategy whereby the community (e.g. scholars and publishers) can directly involve themselves in crowdsourcing open citations, by uploading their citation data via the OpenCitations infrastructure into our new index, CROCI, the Crowdsourced Open Citations Index.

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