arXiv subjects

Davide Bacciu

Publications and source records attributed to Davide Bacciu.

124 records · Page 7Linked to original sources

arXiv2020

Encoding-based Memory Modules for Recurrent Neural Networks

Learning to solve sequential tasks with recurrent models requires the ability to memorize long sequences and to extract task-relevant features from them. In this paper, we study the memorization subtask from the point of view of the design and training of recurrent neural networks. We propose a new model, the Linear Memory Network, which features an encoding-based memorization component built with a linear autoencoder for sequences. We extend the memorization component with a modular memory that encodes the hidden state sequence at different sampling frequencies. Additionally, we provide a specialized training algorithm that initializes the memory to efficiently encode the hidden activations of the network. The experimental results on synthetic and real-world datasets show that specializing the training algorithm to train the memorization component always improves the final performance whenever the memorization of long sequences is necessary to solve the problem.

cs.LG↗

arXiv2020

Edge-based sequential graph generation with recurrent neural networks

Graph generation with Machine Learning is an open problem with applications in various research fields. In this work, we propose to cast the generative process of a graph into a sequential one, relying on a node ordering procedure. We use this sequential process to design a novel generative model composed of two recurrent neural networks that learn to predict the edges of graphs: the first network generates one endpoint of each edge, while the second network generates the other endpoint conditioned on the state of the first. We test our approach extensively on five different datasets, comparing with two well-known baselines coming from graph literature, and two recurrent approaches, one of which holds state of the art performances. Evaluation is conducted considering quantitative and qualitative characteristics of the generated samples. Results show that our approach is able to yield novel, and unique graphs originating from very different distributions, while retaining structural properties very similar to those in the training sample. Under the proposed evaluation framework, our approach is able to reach performances comparable to the current state of the art on the graph generation task.

stat.ML↗

arXiv2020

Theoretically Expressive and Edge-aware Graph Learning

We propose a new Graph Neural Network that combines recent advancements in the field. We give theoretical contributions by proving that the model is strictly more general than the Graph Isomorphism Network and the Gated Graph Neural Network, as it can approximate the same functions and deal with arbitrary edge values. Then, we show how a single node information can flow through the graph unchanged.

cs.LG↗

arXiv2019

Contextual Graph Markov Model: A Deep and Generative Approach to Graph Processing

We introduce the Contextual Graph Markov Model, an approach combining ideas from generative models and neural networks for the processing of graph data. It founds on a constructive methodology to build a deep architecture comprising layers of probabilistic models that learn to encode the structured information in an incremental fashion. Context is diffused in an efficient and scalable way across the graph vertexes and edges. The resulting graph encoding is used in combination with discriminative models to address structure classification benchmarks.

cs.LG↗

arXiv2019

A Non-Negative Factorization approach to node pooling in Graph Convolutional Neural Networks

The paper discusses a pooling mechanism to induce subsampling in graph structured data and introduces it as a component of a graph convolutional neural network. The pooling mechanism builds on the Non-Negative Matrix Factorization (NMF) of a matrix representing node adjacency and node similarity as adaptively obtained through the vertices embedding learned by the model. Such mechanism is applied to obtain an incrementally coarser graph where nodes are adaptively pooled into communities based on the outcomes of the non-negative factorization. The empirical analysis on graph classification benchmarks shows how such coarsening process yields significant improvements in the predictive performance of the model with respect to its non-pooled counterpart.

cs.LG↗

arXiv2019

Bayesian Tensor Factorisation for Bottom-up Hidden Tree Markov Models

Bottom-Up Hidden Tree Markov Model is a highly expressive model for tree-structured data. Unfortunately, it cannot be used in practice due to the intractable size of its state-transition matrix. We propose a new approximation which lies on the Tucker factorisation of tensors. The probabilistic interpretation of such approximation allows us to define a new probabilistic model for tree-structured data. Hence, we define the new approximated model and we derive its learning algorithm. Then, we empirically assess the effective power of the new model evaluating it on two different tasks. In both cases, our model outperforms the other approximated model known in the literature.

cs.LG↗

arXiv2019

Detecting Adversarial Examples through Nonlinear Dimensionality Reduction

Deep neural networks are vulnerable to adversarial examples, i.e., carefully-perturbed inputs aimed to mislead classification. This work proposes a detection method based on combining non-linear dimensionality reduction and density estimation techniques. Our empirical findings show that the proposed approach is able to effectively detect adversarial examples crafted by non-adaptive attackers, i.e., not specifically tuned to bypass the detection method. Given our promising results, we plan to extend our analysis to adaptive attackers in future work.

cs.LG↗

arXiv2019

Deep Tree Transductions - A Short Survey

The paper surveys recent extensions of the Long-Short Term Memory networks to handle tree structures from the perspective of learning non-trivial forms of isomorph structured transductions. It provides a discussion of modern TreeLSTM models, showing the effect of the bias induced by the direction of tree processing. An empirical analysis is performed on real-world benchmarks, highlighting how there is no single model adequate to effectively approach all transduction problems.

cs.LG↗

arXiv2018

Linear Memory Networks

Recurrent neural networks can learn complex transduction problems that require maintaining and actively exploiting a memory of their inputs. Such models traditionally consider memory and input-output functionalities indissolubly entangled. We introduce a novel recurrent architecture based on the conceptual separation between the functional input-output transformation and the memory mechanism, showing how they can be implemented through different neural components. By building on such conceptualization, we introduce the Linear Memory Network, a recurrent model comprising a feedforward neural network, realizing the non-linear functional transformation, and a linear autoencoder for sequences, implementing the memory component. The resulting architecture can be efficiently trained by building on closed-form solutions to linear optimization problems. Further, by exploiting equivalence results between feedforward and recurrent neural networks we devise a pretraining schema for the proposed architecture. Experiments on polyphonic music datasets show competitive results against gated recurrent networks and other state of the art models.

cs.LG↗

arXiv2018

Text Summarization as Tree Transduction by Top-Down TreeLSTM

Extractive compression is a challenging natural language processing problem. This work contributes by formulating neural extractive compression as a parse tree transduction problem, rather than a sequence transduction task. Motivated by this, we introduce a deep neural model for learning structure-to-substructure tree transductions by extending the standard Long Short-Term Memory, considering the parent-child relationships in the structural recursion. The proposed model can achieve state of the art performance on sentence compression benchmarks, both in terms of accuracy and compression rate.

cs.IR↗

arXiv2018

Learning Tree Distributions by Hidden Markov Models

Hidden tree Markov models allow learning distributions for tree structured data while being interpretable as nondeterministic automata. We provide a concise summary of the main approaches in literature, focusing in particular on the causality assumptions introduced by the choice of a specific tree visit direction. We will then sketch a novel non-parametric generalization of the bottom-up hidden tree Markov model with its interpretation as a nondeterministic tree automaton with infinite states.

stat.ML↗

arXiv2018

Concentric ESN: Assessing the Effect of Modularity in Cycle Reservoirs

The paper introduces concentric Echo State Network, an approach to design reservoir topologies that tries to bridge the gap between deterministically constructed simple cycle models and deep reservoir computing approaches. We show how to modularize the reservoir into simple unidirectional and concentric cycles with pairwise bidirectional jump connections between adjacent loops. We provide a preliminary experimental assessment showing how concentric reservoirs yield to superior predictive accuracy and memory capacity with respect to single cycle reservoirs and deep reservoir models.

cs.NE↗

arXiv2018

Bioinformatics and Medicine in the Era of Deep Learning

Many of the current scientific advances in the life sciences have their origin in the intensive use of data for knowledge discovery. In no area this is so clear as in bioinformatics, led by technological breakthroughs in data acquisition technologies. It has been argued that bioinformatics could quickly become the field of research generating the largest data repositories, beating other data-intensive areas such as high-energy physics or astroinformatics. Over the last decade, deep learning has become a disruptive advance in machine learning, giving new live to the long-standing connectionist paradigm in artificial intelligence. Deep learning methods are ideally suited to large-scale data and, therefore, they should be ideally suited to knowledge discovery in bioinformatics and biomedicine at large. In this brief paper, we review key aspects of the application of deep learning in bioinformatics and medicine, drawing from the themes covered by the contributions to an ESANN 2018 special session devoted to this topic.

cs.LG↗

arXiv2017

Hidden Tree Markov Networks: Deep and Wide Learning for Structured Data

The paper introduces the Hidden Tree Markov Network (HTN), a neuro-probabilistic hybrid fusing the representation power of generative models for trees with the incremental and discriminative learning capabilities of neural networks. We put forward a modular architecture in which multiple generative models of limited complexity are trained to learn structural feature detectors whose outputs are then combined and integrated by neural layers at a later stage. In this respect, the model is both deep, thanks to the unfolding of the generative models on the input structures, as well as wide, given the potentially large number of generative modules that can be trained in parallel. Experimental results show that the proposed approach can outperform state-of-the-art syntactic kernels as well as generative kernels built on the same probabilistic model as the HTN.

cs.LG↗

arXiv2017

DropIn: Making Reservoir Computing Neural Networks Robust to Missing Inputs by Dropout

The paper presents a novel, principled approach to train recurrent neural networks from the Reservoir Computing family that are robust to missing part of the input features at prediction time. By building on the ensembling properties of Dropout regularization, we propose a methodology, named DropIn, which efficiently trains a neural model as a committee machine of subnetworks, each capable of predicting with a subset of the original input features. We discuss the application of the DropIn methodology in the context of Reservoir Computing models and targeting applications characterized by input sources that are unreliable or prone to be disconnected, such as in pervasive wireless sensor networks and ambient intelligence. We provide an experimental assessment using real-world data from such application domains, showing how the Dropin methodology allows to maintain predictive performances comparable to those of a model without missing features, even when 20\%-50\% of the inputs are not available.

cs.LG↗

arXiv2015

Using a Machine Learning Approach to Implement and Evaluate Product Line Features

Bike-sharing systems are a means of smart transportation in urban environments with the benefit of a positive impact on urban mobility. In this paper we are interested in studying and modeling the behavior of features that permit the end user to access, with her/his web browser, the status of the Bike-Sharing system. In particular, we address features able to make a prediction on the system state. We propose to use a machine learning approach to analyze usage patterns and learn computational models of such features from logs of system usage. On the one hand, machine learning methodologies provide a powerful and general means to implement a wide choice of predictive features. On the other hand, trained machine learning models are provided with a measure of predictive performance that can be used as a metric to assess the cost-performance trade-off of the feature. This provides a principled way to assess the runtime behavior of different components before putting them into operation.

cs.SE↗