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Debasmita Mondal

Publications and source records attributed to Debasmita Mondal.

4 recordsLinked to original sources

Intrinsic cell-to-cell variance from experimental single-cell motility data

When analyzing the individual positional dynamics of an ensemble of moving objects, the extracted parameters that characterize the motion of individual objects, such as the mean-squared instantaneous velocity or the diffusivity, exhibit a spread that is due to the convolution of three different effects: i) Motion stochasticity, caused by the fluctuating environment and enhanced by limited observation time, ii) measurement errors that depend on details of the detection technique, and iii) the intrinsic parameter variance that characterizes differences between individual objects, the quantity of ultimate interest. We develop the theoretical framework to separate these effects using the generalized Langevin equation (GLE), which constitutes the most general description of active and passive dynamics, as it derives from the general underlying many-body Hamiltonian for the studied system without approximations. We apply our methodology to determine intrinsic cell-to-cell differences of living human breast-cancer cells, algae cells and, as a benchmark, size differences of passively moving polystyrene beads in water. We find algae and human breast-cancer cells to exhibit significant individual differences, reflected by the spreading of the intrinsic mean-squared instantaneous velocity over two orders of magnitude, which is remarkable in light of the genetic homogeneity of the investigated breast-cancer cells and highlights their phenotypical diversity. Quantification of the intrinsic variance of single-cell properties is relevant for infection biology, ecology and medicine and opens up new possibilities to estimate population heterogeneity on the single-organism level in a non-destructive manner. Our framework is not limited to motility properties but can be readily applied to general experimental time-series data.

physics.bio-ph

Data-driven classification of individual cells by their non-Markovian motion

We present a method to differentiate organisms solely by their motion based on the generalized Langevin equation (GLE) and use it to distinguish two different swimming modes of strongly confined unicellular microalgae Chlamydomonas reinhardtii (CR). The GLE is the most general model for active or passive motion of organisms and particles and in particular includes non-Markovian effects, i.e., the trajectory memory of its past. We extract all GLE parameters from individual cell trajectories and perform an unbiased cluster analysis to group them into different classes. For the specific cell population employed in the experiments, the GLE-based assignment into the two different swimming modes works perfectly, as checked by control experiments. The classification and sorting of single cells and organisms is important in different areas, our method that is based on motion trajectories offers wide-ranging applications in biology and medicine.

physics.bio-ph

Strong confinement of active microalgae leads to inversion of vortex flow and enhanced mixing

Microorganisms swimming through viscous fluids imprint their propulsion mechanisms in the flow fields they generate. Extreme confinement of these swimmers between rigid boundaries often arises in natural and technological contexts, yet measurements of their mechanics in this regime are absent. Here, we show that strongly confining the microalga Chlamydomonas between two parallel plates not only inhibits its motility through contact friction with the walls but also leads, for purely mechanical reasons, to inversion of the surrounding vortex flows. Insights from the experiment lead to a simplified theoretical description of flow fields based on a quasi-2D Brinkman approximation to the Stokes equation rather than the usual method of images. We argue that this vortex flow inversion provides the advantage of enhanced fluid mixing despite higher friction. Overall, our results offer a comprehensive framework for analyzing the collective flows of strongly confined swimmers.

cond-mat.soft

Internal friction controls active ciliary oscillations near the instability threshold

Ciliary oscillations driven by molecular motors cause fluid motion at micron scale. Stable oscillations require a substantial source of dissipation to balance the energy input of motors. Conventionally, it stems from external fluid. We show, in contrast, that external fluid friction is negligible compared to internal elastic stress through a simultaneous measurement of motion and flow field of an isolated and active Chlamydomonas cilium beating near the instability threshold. Consequently, internal friction emerges as the sole source of dissipation for ciliary oscillations. We combine these experimental insights with theoretical modeling of active filaments to show that an instability to oscillations takes place when active stresses are strain softening and shear thinning. Together, our results reveal a counterintuitive mechanism of ciliary beating and provide a general experimental and theoretical methodology to analyze other active filaments, both biological and synthetic ones.

cond-mat.soft