arXiv subjects

Debesh Jha

Publications and source records attributed to Debesh Jha.

At least 19 recordsLinked to original sources

arXiv2026

Federated LoRA Adaptation of BiomedCLIP Across Four International Chest X-Ray Cohorts

Federated learning (FL) lets institutions train a shared model without exchanging data, and Low-Rank Adaptation (LoRA) makes this practical at scale by communicating only compact low-rank updates. Biomedical imaging is a compelling setting for this combination: patient data are archived behind privacy regulations, and institutions differ widely in scanners, protocols, and compute. Such heterogeneity raises the question of how federated LoRA updates should be aggregated, increasingly pressing as multimodal vision-language models become central to medical image analysis. We benchmark federated Parameter-efficient fine-tuning (PEFT) of BiomedCLIP for chest radiograph classification across four public cohorts on three continents (USA, Vietnam, Spain). Federated LoRA adaptation improves shared-class AUC on all four cohorts over the unadapted BiomedCLIP backbone (mean 0.687 to 0.802), showing that the gains come from federated adaptation rather than from the pretrained model's zero-shot ability. Relative to isolated single-cohort training, federation improves the weaker cohorts while largely preserving the strongest and approaches a centralized reference (0.812) that pools all data. The singular value decomposition (SVD)-based product-space aggregation introduced by FlexLoRA is essential to this gain (naive factor averaging drops mean AUC by 0.097), whereas a drift-correcting optimizer (FedProx) shows no benefit over FedAvg in our single-seed runs, consistent with LoRA's low-rank updates already limiting client drift. Biomedical vision-language models can thus be adapted collaboratively across heterogeneous, geographically distributed institutions without centralizing data.

cs.LG↗

arXiv2026

Benchmarking the Domain Gap: Model Selection Instability Under Domain Shift in Video Capsule Endoscopy

Video capsule endoscopy (VCE) classification is typically evaluated within a single dataset, yet clinical deployment demands robustness across acquisition sources, labeling policies, and patient populations. We examine this gap using Kvasir-Capsule, Capsule Vision 2024 (CV2024), and a shared-label subset of Galar. We fine-tune a suite of general-domain pretrained backbones on the official Kvasir-Capsule folds under a standardized protocol and evaluate the same checkpoints on two non-source targets within a documented shared-label decision space. We find that the predictive value of in-domain ranking is target-dependent: Kvasir-Capsule ranking aligns more closely with Galar than with CV2024, while the two non-source targets agree only weakly. Consequently, the strongest in-domain backbone leads on one target yet falls to mid-pack on the other, and no single evaluation target reliably predicts the others. A second CV2024-trained configuration set reproduces this target-dependent instability. We conclude that capsule endoscopy model selection should report cross-target ranking stability rather than peak single-dataset performance.

cs.CV↗

arXiv2026

Induce to Empower: Improving Lightweight Baselines via Foundation Model Induction for Generalized Polyp Segmentation

Automated polyp segmentation in colonoscopy continues to pose challenges due to substantial appearance variations and indistinct polyp boundaries. Although emerging foundation models (FMs) such as DINOv2, SAM, and OneFormer, demonstrate remarkable generalization capabilities, their direct transfer to the polyp segmentation task and deployment in real-time clinical settings are difficult due to lack of large-scale labeled data and high computational demands. In addition, adopting multiple FMs together raises concerns, even though they encode complementary semantic and structural information. While lightweight models, including U-Net, PraNet and U-Net++, are computationally efficient, they often struggle to generalize across datasets due to limited representational capacity. To address this gap, we propose Lite-Polyp Inductor (Lite-Pi), a novel foundation model induction framework that significantly enhances lightweight polyp segmentation baselines. Our proposed framework generates FM-specific prototype representations and aligns them semantically with the corresponding foundation model priors through reconstruction-based supervision. Subsequently, transformer-based fusion is introduced to highlight the polyp relevant representations, including salient boundary information, while preserving complementary semantic cues. Extensive experiments across five polyp segmentation benchmark datasets demonstrate that Lite-{\pi} significantly improves lightweight baselines, achieving superior generalization performance with minimal computational overhead and thereby, offering a practical solution for generalized polyp segmentation. Our code is available at GitHub. https://github.com/lostinrepo/Lite-Pi

cs.CV↗

arXiv2026

DentiAsk: A VQA Benchmark for Multimodal Reasoning in Panoramic Dental Radiographs

Accurate interpretation of panoramic dental radiographs requires the integration of multiple reasoning capabilities: detection, spatial localization, and quantitative assessment. Despite recent advances in multimodal learning, existing medical visual question answering (VQA) benchmarks do not fully capture this complexity, often reducing the task to simplified classification or templated queries. As a result, they provide limited coverage of the diverse reasoning processes required for clinically meaningful interpretation. We introduce DentiAsk, a large-scale dental VQA benchmark that pairs high-resolution panoramic dental radiographs with clinician-validated question-answer pairs spanning three reasoning tiers: descriptive recognition, spatial localization, and numerical quantification across three high-prevalence pathologies: periapical radiolucency (PARL), impacted teeth, and dental caries. DentiAsk comprises 1,000 high-resolution radiographs annotated with 10,000 expert-curated QA pairs. To our knowledge, it is the first dental VQA benchmark to unify categorical, spatial, and quantitative reasoning as separately scored tasks within a single evaluation framework. We benchmark 10 state-of-the-art vision-language models, including LLaVA-v1.5, LLaVA-v1.6, Qwen-VL, InternVL2, and LLaVA-Med, and find that models achieve stronger performance on descriptive queries, whereas they degrade sharply on spatial localization and counting, exposing limitations in compositional, multi-step reasoning. These findings reveal a gap between visual recognition and clinically meaningful reasoning, establishing DentiAsk as a challenging benchmark for advancing multimodal reasoning in medical imaging.

q-bio.QM↗

arXiv2026

Revisiting LLM Adaptation for 3D CT Report Generation: A Study of Scaling and Diagnostic Priors

Recent advances in multimodal learning, including large language models (LLMs) and vision-language models (VLMs), have demonstrated strong adaptability to natural images. However, extending their use to the medical domain, particularly for volumetric (3D) images, is challenging due to high computational complexity, volumetric dependencies and the semantic gap between visual features and clinical terminology. Naively fine-tuning LLMs on limited medical data often leads to overfitting and clinical hallucination, where linguistic fluency is prioritized over clinical factuality. In this study, we investigate parameter-efficient adaptation strategies for volumetric CT report generation and introduce RAD3D-Prefix, a lightweight diagnostic-prior conditioning framework that minimizes the need for extensive parameter training. This module integrates image embeddings with multi-label diagnostic classification logits, preserving critical clinical details while bridging the semantic gap. By keeping the LLM frozen, our method requires minimal trainable parameters and mitigates the risk of overfitting on small, domain-specific datasets. Through a systematic study spanning LLMs from 96.1M to 1.6B parameters, we find that fine-tuning is most beneficial for smaller LLMs, whereas freezing larger (~1B+ LLMs and training only lightweight projection layers provides a superior trade-off between performance, generalization, and computational efficiency. Across multiple automatic metrics and a clinical reader study, RAD3D-Prefix outperforms comparable parameter-efficient baselines and demonstrates strong out-of-domain generalization while using substantially fewer trainable parameters than fully fine-tuned alternatives.

cs.CL↗

arXiv2026

Firebolt-VL: Efficient Vision-Language Understanding with Cross-Modality Modulation

Recent advances in multimodal large language models (MLLMs) have enabled impressive progress in vision-language understanding, yet their high computational cost limits deployment in resource-constrained scenarios such as personal assistants, document understanding, and smart cameras. Most existing methods rely on Transformer-based cross-attention, whose quadratic complexity hinders efficiency. Moreover, small vision-language models often struggle to precisely capture fine-grained, task-relevant visual regions, leading to degraded performance on fine-grained reasoning tasks that limit their effectiveness in the real world. To address these issues, we introduce Firebolt-VL, an efficient vision-language model that replaces the Transformer-based decoder with a Liquid Foundation Model (LFM) decoder. To further enhance visual grounding, we propose a Token-Grid Correlation Module, which computes lightweight correlations between text tokens and image patches and modulates via the state-space model with FiLM conditioning. This enables the model to selectively emphasize visual regions relevant to the textual prompt while maintaining linear-time inference. Experimental results across multiple benchmarks demonstrate that Firebolt-VL achieves accurate, fine-grained understanding with significantly improved efficiency. Our model and code are available at: https://fireboltvl.github.io

cs.CV↗

arXiv2025

From SAM to DINOv2: Towards Distilling Foundation Models to Lightweight Baselines for Generalized Polyp Segmentation

Accurate polyp segmentation during colonoscopy is critical for the early detection of colorectal cancer and still remains challenging due to significant size, shape, and color variations, and the camouflaged nature of polyps. While lightweight baseline models such as U-Net, U-Net++, and PraNet offer advantages in terms of easy deployment and low computational cost, they struggle to deal with the above issues, leading to limited segmentation performance. In contrast, large-scale vision foundation models such as SAM, DINOv2, OneFormer, and Mask2Former have exhibited impressive generalization performance across natural image domains. However, their direct transfer to medical imaging tasks (e.g., colonoscopic polyp segmentation) is not straightforward, primarily due to the scarcity of large-scale datasets and lack of domain-specific knowledge. To bridge this gap, we propose a novel distillation framework, Polyp-DiFoM, that transfers the rich representations of foundation models into lightweight segmentation baselines, allowing efficient and accurate deployment in clinical settings. In particular, we infuse semantic priors from the foundation models into canonical architectures such as U-Net and U-Net++ and further perform frequency domain encoding for enhanced distillation, corroborating their generalization capability. Extensive experiments are performed across five benchmark datasets, such as Kvasir-SEG, CVC-ClinicDB, ETIS, ColonDB, and CVC-300. Notably, Polyp-DiFoM consistently outperforms respective baseline models significantly, as well as the state-of-the-art model, with nearly 9 times reduced computation overhead. The code is available at https://github.com/lostinrepo/PolypDiFoM.

cs.CV↗

arXiv2025

When CNNs Outperform Transformers and Mambas: Revisiting Deep Architectures for Dental Caries Segmentation

Accurate identification and segmentation of dental caries in panoramic radiographs are critical for early diagnosis and effective treatment planning. Automated segmentation remains challenging due to low lesion contrast, morphological variability, and limited annotated data. In this study, we present the first comprehensive benchmarking of convolutional neural networks, vision transformers and state-space mamba architectures for automated dental caries segmentation on panoramic radiographs through a DC1000 dataset. Twelve state-of-the-art architectures, including VMUnet, MambaUNet, VMUNetv2, RMAMamba-S, TransNetR, PVTFormer, DoubleU-Net, and ResUNet++, were trained under identical configurations. Results reveal that, contrary to the growing trend toward complex attention based architectures, the CNN-based DoubleU-Net achieved the highest dice coefficient of 0.7345, mIoU of 0.5978, and precision of 0.8145, outperforming all transformer and Mamba variants. In the study, the top 3 results across all performance metrics were achieved by CNN-based architectures. Here, Mamba and transformer-based methods, despite their theoretical advantage in global context modeling, underperformed due to limited data and weaker spatial priors. These findings underscore the importance of architecture-task alignment in domain-specific medical image segmentation more than model complexity. Our code is available at: https://github.com/JunZengz/dental-caries-segmentation.

cs.CV↗

arXiv2025

SRMA-Mamba: Spatial Reverse Mamba Attention Network for Pathological Liver Segmentation in MRI Volumes

Liver cirrhosis plays a critical role in the prognosis of chronic liver disease. Early detection and timely intervention are essential for reducing mortality rates. However, the intricate anatomical architecture and diverse pathological changes of liver tissue complicate the accurate detection and characterization of pathological liver structures in clinical settings. Existing methods underutilize spatial anatomical details in volumetric MRI data, thereby hindering their clinical effectiveness and explainability. To address this challenge, we introduce a novel Mamba-based network, SRMA-Mamba, designed to model the spatial relationships within complex anatomical structures of MRI volumes. By integrating the Spatial Anatomy-Based Mamba module (SABMamba), SRMA-Mamba performs selective Mamba scans within pathological liver tissues and combines anatomical information from the sagittal, coronal, and axial planes to construct a global spatial context representation, enabling efficient volumetric segmentation of pathological liver structures. Furthermore, we introduce the Spatial Reverse Mamba Attention module (SRMA), designed to progressively refine boundary details in the segmentation map, utilizing both the coarse segmentation map and hierarchical encoding features. Extensive experiments demonstrate that SRMA-Mamba surpasses state-of-the-art methods, delivering exceptional performance in 3D pathological liver segmentation. The source code is available at https://github.com/JunZengz/SRMA-Mamba.

cs.CV↗

arXiv2025

Large Language Model Evaluated Stand-alone Attention-Assisted Graph Neural Network with Spatial and Structural Information Interaction for Precise Endoscopic Image Segmentation

Accurate endoscopic image segmentation on the polyps is critical for early colorectal cancer detection. However, this task remains challenging due to low contrast with surrounding mucosa, specular highlights, and indistinct boundaries. To address these challenges, we propose FOCUS-Med, which stands for Fusion of spatial and structural graph with attentional context-aware polyp segmentation in endoscopic medical imaging. FOCUS-Med integrates a Dual Graph Convolutional Network (Dual-GCN) module to capture contextual spatial and topological structural dependencies. This graph-based representation enables the model to better distinguish polyps from background tissues by leveraging topological cues and spatial connectivity, which are often obscured in raw image intensities. It enhances the model's ability to preserve boundaries and delineate complex shapes typical of polyps. In addition, a location-fused stand-alone self-attention is employed to strengthen global context integration. To bridge the semantic gap between encoder-decoder layers, we incorporate a trainable weighted fast normalized fusion strategy for efficient multi-scale aggregation. Notably, we are the first to introduce the use of a Large Language Model (LLM) to provide detailed qualitative evaluations of segmentation quality. Extensive experiments on public benchmarks demonstrate that FOCUS-Med achieves state-of-the-art performance across five key metrics, underscoring its effectiveness and clinical potential for AI-assisted colonoscopy.

cs.CV↗

arXiv2025

Mamba Guided Boundary Prior Matters: A New Perspective for Generalized Polyp Segmentation

Polyp segmentation in colonoscopy images is crucial for early detection and diagnosis of colorectal cancer. However, this task remains a significant challenge due to the substantial variations in polyp shape, size, and color, as well as the high similarity between polyps and surrounding tissues, often compounded by indistinct boundaries. While existing encoder-decoder CNN and transformer-based approaches have shown promising results, they struggle with stable segmentation performance on polyps with weak or blurry boundaries. These methods exhibit limited abilities to distinguish between polyps and non-polyps and capture essential boundary cues. Moreover, their generalizability still falls short of meeting the demands of real-time clinical applications. To address these limitations, we propose SAM-MaGuP, a groundbreaking approach for robust polyp segmentation. By incorporating a boundary distillation module and a 1D-2D Mamba adapter within the Segment Anything Model (SAM), SAM-MaGuP excels at resolving weak boundary challenges and amplifies feature learning through enriched global contextual interactions. Extensive evaluations across five diverse datasets reveal that SAM-MaGuP outperforms state-of-the-art methods, achieving unmatched segmentation accuracy and robustness. Our key innovations, a Mamba-guided boundary prior and a 1D-2D Mamba block, set a new benchmark in the field, pushing the boundaries of polyp segmentation to new heights.

cs.CV↗

arXiv2025

PRS-Med: Position Reasoning Segmentation in Medical Imaging

Prompt-based medical image segmentation has rapidly emerged, yet existing methods rely on explicit prompts like bounding boxes and struggle to reason about the spatial relationships essential for clinical diagnosis. While general-domain models attempt complex coordinate regression, these approaches often lack the structured reliability required for medical applications. In this work, we introduce PRS-Med, a unified framework that adopts an elegant, clinical-first approach to position reasoning segmentation. By utilizing a medical vision-language model integrated with a segmentation decoder, PRS-Med mimics the structured "search patterns" used by radiologists to identify pathologies within specific anatomical zones. To support this robust reasoning, we present the Medical Position Reasoning Segmentation (PosMed) dataset, comprising 116,000 expert-validated, spatially grounded question-answer pairs across six imaging modalities. Unlike previous brittle attempts at spatial reasoning, PosMed leverages a scalable, deterministic pipeline validated by board-certified radiologists to ensure clinical accuracy. Extensive experiments demonstrate that our zone-based reasoning not only improves segmentation accuracy (mean Dice improvements up to +31.2\%) but also provides a high-confidence interpretability layer that outperforms state-of-the-art complex reasoning models. By prioritizing functional reliability over unnecessary technical complexity, PRS-Med offers a practical and scalable baseline for the next generation of intelligent medical assistants.

cs.CV↗

arXiv2025

FocusNet: Transformer-enhanced Polyp Segmentation with Local and Pooling Attention

Colonoscopy is vital in the early diagnosis of colorectal polyps. Regular screenings can effectively prevent benign polyps from progressing to CRC. While deep learning has made impressive strides in polyp segmentation, most existing models are trained on single-modality and single-center data, making them less effective in real-world clinical environments. To overcome these limitations, we propose FocusNet, a Transformer-enhanced focus attention network designed to improve polyp segmentation. FocusNet incorporates three essential modules: the Cross-semantic Interaction Decoder Module (CIDM) for generating coarse segmentation maps, the Detail Enhancement Module (DEM) for refining shallow features, and the Focus Attention Module (FAM), to balance local detail and global context through local and pooling attention mechanisms. We evaluate our model on PolypDB, a newly introduced dataset with multi-modality and multi-center data for building more reliable segmentation methods. Extensive experiments showed that FocusNet consistently outperforms existing state-of-the-art approaches with a high dice coefficients of 82.47% on the BLI modality, 88.46% on FICE, 92.04% on LCI, 82.09% on the NBI and 93.42% on WLI modality, demonstrating its accuracy and robustness across five different modalities. The source code for FocusNet is available at https://github.com/JunZengz/FocusNet.

eess.IV↗

arXiv2025

Liver Cirrhosis Stage Estimation from MRI with Deep Learning

We present an end-to-end deep learning framework for automated liver cirrhosis stage estimation from multi-sequence MRI. Cirrhosis is the severe scarring (fibrosis) of the liver and a common endpoint of various chronic liver diseases. Early diagnosis is vital to prevent complications such as decompensation and cancer, which significantly decreases life expectancy. However, diagnosing cirrhosis in its early stages is challenging, and patients often present with life-threatening complications. Our approach integrates multi-scale feature learning with sequence-specific attention mechanisms to capture subtle tissue variations across cirrhosis progression stages. Using CirrMRI600+, a large-scale publicly available dataset of 628 high-resolution MRI scans from 339 patients, we demonstrate state-of-the-art performance in three-stage cirrhosis classification. Our best model achieves 72.8% accuracy on T1W and 63.8% on T2W sequences, significantly outperforming traditional radiomics-based approaches. Through extensive ablation studies, we show that our architecture effectively learns stage-specific imaging biomarkers. We establish new benchmarks for automated cirrhosis staging and provide insights for developing clinically applicable deep learning systems. The source code will be available at https://github.com/JunZengz/CirrhosisStage.

eess.IV↗

arXiv2025

A Reverse Mamba Attention Network for Pathological Liver Segmentation

We present RMA-Mamba, a novel architecture that advances the capabilities of vision state space models through a specialized reverse mamba attention module (RMA). The key innovation lies in RMA-Mamba's ability to capture long-range dependencies while maintaining precise local feature representation through its hierarchical processing pipeline. By integrating Vision Mamba (VMamba)'s efficient sequence modeling with RMA's targeted feature refinement, our architecture achieves superior feature learning across multiple scales. This dual-mechanism approach enables robust handling of complex morphological patterns while maintaining computational efficiency. We demonstrate RMA-Mamba's effectiveness in the challenging domain of pathological liver segmentation (from both CT and MRI), where traditional segmentation approaches often fail due to tissue variations. When evaluated on a newly introduced cirrhotic liver dataset (CirrMRI600+) of T2-weighted MRI scans, RMA-Mamba achieves the state-of-the-art performance with a Dice coefficient of 92.08%, mean IoU of 87.36%, and recall of 92.96%. The architecture's generalizability is further validated on the cancerous liver segmentation from CT scans (LiTS: Liver Tumor Segmentation dataset), yielding a Dice score of 92.9% and mIoU of 88.99%. Our code is available for public: https://github.com/JunZengz/RMAMamba.

eess.IV↗

arXiv2025

Diverse Image Generation with Diffusion Models and Cross Class Label Learning for Polyp Classification

Pathologic diagnosis is a critical phase in deciding the optimal treatment procedure for dealing with colorectal cancer (CRC). Colonic polyps, precursors to CRC, can pathologically be classified into two major types: adenomatous and hyperplastic. For precise classification and early diagnosis of such polyps, the medical procedure of colonoscopy has been widely adopted paired with various imaging techniques, including narrow band imaging and white light imaging. However, the existing classification techniques mainly rely on a single imaging modality and show limited performance due to data scarcity. Recently, generative artificial intelligence has been gaining prominence in overcoming such issues. Additionally, various generation-controlling mechanisms using text prompts and images have been introduced to obtain visually appealing and desired outcomes. However, such mechanisms require class labels to make the model respond efficiently to the provided control input. In the colonoscopy domain, such controlling mechanisms are rarely explored; specifically, the text prompt is a completely uninvestigated area. Moreover, the unavailability of expensive class-wise labels for diverse sets of images limits such explorations. Therefore, we develop a novel model, PathoPolyp-Diff, that generates text-controlled synthetic images with diverse characteristics in terms of pathology, imaging modalities, and quality. We introduce cross-class label learning to make the model learn features from other classes, reducing the burdensome task of data annotation. The experimental results report an improvement of up to 7.91% in balanced accuracy using a publicly available dataset. Moreover, cross-class label learning achieves a statistically significant improvement of up to 18.33% in balanced accuracy during video-level analysis. The code is available at https://github.com/Vanshali/PathoPolyp-Diff.

eess.IV↗

arXiv2025

L2GNet: Optimal Local-to-Global Representation of Anatomical Structures for Generalized Medical Image Segmentation

Continuous Latent Space (CLS) and Discrete Latent Space (DLS) models, like AttnUNet and VQUNet, have excelled in medical image segmentation. In contrast, Synergistic Continuous and Discrete Latent Space (CDLS) models show promise in handling fine and coarse-grained information. However, they struggle with modeling long-range dependencies. CLS or CDLS-based models, such as TransUNet or SynergyNet are adept at capturing long-range dependencies. Since they rely heavily on feature pooling or aggregation using self-attention, they may capture dependencies among redundant regions. This hinders comprehension of anatomical structure content, poses challenges in modeling intra-class and inter-class dependencies, increases false negatives and compromises generalization. Addressing these issues, we propose L2GNet, which learns global dependencies by relating discrete codes obtained from DLS using optimal transport and aligning codes on a trainable reference. L2GNet achieves discriminative on-the-fly representation learning without an additional weight matrix in self-attention models, making it computationally efficient for medical applications. Extensive experiments on multi-organ segmentation and cardiac datasets demonstrate L2GNet's superiority over state-of-the-art methods, including the CDLS method SynergyNet, offering an novel approach to enhance deep learning models' performance in medical image analysis.

cs.CV↗

arXiv2024

SAM-Mamba: Mamba Guided SAM Architecture for Generalized Zero-Shot Polyp Segmentation

Polyp segmentation in colonoscopy is crucial for detecting colorectal cancer. However, it is challenging due to variations in the structure, color, and size of polyps, as well as the lack of clear boundaries with surrounding tissues. Traditional segmentation models based on Convolutional Neural Networks (CNNs) struggle to capture detailed patterns and global context, limiting their performance. Vision Transformer (ViT)-based models address some of these issues but have difficulties in capturing local context and lack strong zero-shot generalization. To this end, we propose the Mamba-guided Segment Anything Model (SAM-Mamba) for efficient polyp segmentation. Our approach introduces a Mamba-Prior module in the encoder to bridge the gap between the general pre-trained representation of SAM and polyp-relevant trivial clues. It injects salient cues of polyp images into the SAM image encoder as a domain prior while capturing global dependencies at various scales, leading to more accurate segmentation results. Extensive experiments on five benchmark datasets show that SAM-Mamba outperforms traditional CNN, ViT, and Adapter-based models in both quantitative and qualitative measures. Additionally, SAM-Mamba demonstrates excellent adaptability to unseen datasets, making it highly suitable for real-time clinical use.

cs.CV↗