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Declan G. Bates

Publications and source records attributed to Declan G. Bates.

2 recordsLinked to original sources

Digital Twins of Mechanically Ventilated Preterm Neonates with Respiratory Distress Syndrome

Background: Mechanical ventilation is life-saving for preterm infants with respiratory distress syndrome but can also contribute to lung injury and long-term morbidity. Protective ventilation strategies are recommended, yet implementation in neonatal intensive care units remains inconsistent, and infants continue to be exposed to injurious ventilator settings. Objective: To develop and validate a cohort of neonatal digital twins, based on mechanistic models of cardiopulmonary physiology calibrated to individual patient data, as a tool for simulating and optimising protective ventilation strategies. Methods: A high-fidelity computational simulator of human cardiopulmonary physiology was adapted to neonatal-specific parameters, including lung compliance, dead space, pulmonary vascular resistance, oxygen consumption, and fetal haemoglobin oxygen affinity. Digital twins were generated using data at 65 time points from 11 preterm neonates receiving volume-controlled ventilation. Model parameters were calibrated to minimise the error between simulated and observed PaO2, PaCO2, and peak inspiratory pressure (PIP). Results: Digital twins reproduced measured data with mean absolute percentage errors of 3.9% (PaO2), 3.0% (PaCO2), and 5.8% (PIP) across the cohort. Predictions for uncalibrated variables (pHa, SaO2, mean and minimum airway pressure) also showed high accuracy, with errors <5%. Strong correlations and narrow limits of agreement were observed across all patients and time points. Conclusions: This study demonstrates, for the first time, the feasibility of creating fully mechanistic digital twins of mechanically ventilated neonates with RDS. The twins accurately captured patient-specific gas exchange and respiratory mechanics, supporting their potential as a platform for conducting virtual clinical trials and for the design of individualized, lung-protective ventilation strategies.

physics.med-ph

On the stability of nucleic acid feedback controllers

Recent work has shown how chemical reaction network theory may be used to design dynamical systems that can be implemented biologically in nucleic acid-based chemistry. While this has allowed the construction of advanced open-loop circuitry based on cascaded DNA strand displacement (DSD) reactions, little progress has so far been made in developing the requisite theoretical machinery to inform the systematic design of feedback controllers in this context. Here, we develop a number of foundational theoretical results on the equilibria, stability, and dynamics of nucleic acid controllers. In particular, we show that the implementation of feedback controllers using DSD reactions introduces additional nonlinear dynamics, even in the case of purely linear designs, e.g. PI controllers. By decomposing the effects of these non-observable nonlinear dynamics, we show that, in general, the stability of the linear system design does not necessarily imply the stability of the underlying chemical network, which can be lost under experimental variability when feedback interconnections are introduced. We provide an in-depth theoretical analysis of an example illustrating this phenomenon, whereby the linear design does not capture the instability of the full nonlinear system implemented as a DSD reaction network, and we further confirm these results using VisualDSD, a bespoke software tool for simulating nucleic acid-based circuits. Our analysis highlight the many interesting and unique characteristics of this important new class of feedback control systems.

eess.SY