arXiv subjects

Deming Chen

Publications and source records attributed to Deming Chen.

77 records · Page 5Linked to original sources

arXiv2018

ASAP: Accelerated Short-Read Alignment on Programmable Hardware

The proliferation of high-throughput sequencing machines ensures rapid generation of up to billions of short nucleotide fragments in a short period of time. This massive amount of sequence data can quickly overwhelm today's storage and compute infrastructure. This paper explores the use of hardware acceleration to significantly improve the runtime of short-read alignment, a crucial step in preprocessing sequenced genomes. We focus on the Levenshtein distance (edit-distance) computation kernel and propose the ASAP accelerator, which utilizes the intrinsic delay of circuits for edit-distance computation elements as a proxy for computation. Our design is implemented on an Xilinx Virtex 7 FPGA in an IBM POWER8 system that uses the CAPI interface for cache coherence across the CPU and FPGA. Our design is $200\times$ faster than the equivalent C implementation of the kernel running on the host processor and $2.2\times$ faster for an end-to-end alignment tool for 120-150 base-pair short-read sequences. Further the design represents a $3760\times$ improvement over the CPU in performance/Watt terms.

cs.DC↗

arXiv2018

Improved ASR for Under-Resourced Languages Through Multi-Task Learning with Acoustic Landmarks

Furui first demonstrated that the identity of both consonant and vowel can be perceived from the C-V transition; later, Stevens proposed that acoustic landmarks are the primary cues for speech perception, and that steady-state regions are secondary or supplemental. Acoustic landmarks are perceptually salient, even in a language one doesn't speak, and it has been demonstrated that non-speakers of the language can identify features such as the primary articulator of the landmark. These factors suggest a strategy for developing language-independent automatic speech recognition: landmarks can potentially be learned once from a suitably labeled corpus and rapidly applied to many other languages. This paper proposes enhancing the cross-lingual portability of a neural network by using landmarks as the secondary task in multi-task learning (MTL). The network is trained in a well-resourced source language with both phone and landmark labels (English), then adapted to an under-resourced target language with only word labels (Iban). Landmark-tasked MTL reduces source-language phone error rate by 2.9% relative, and reduces target-language word error rate by 1.9%-5.9% depending on the amount of target-language training data. These results suggest that landmark-tasked MTL causes the DNN to learn hidden-node features that are useful for cross-lingual adaptation.

cs.CL↗

arXiv2018

CSRNet: Dilated Convolutional Neural Networks for Understanding the Highly Congested Scenes

We propose a network for Congested Scene Recognition called CSRNet to provide a data-driven and deep learning method that can understand highly congested scenes and perform accurate count estimation as well as present high-quality density maps. The proposed CSRNet is composed of two major components: a convolutional neural network (CNN) as the front-end for 2D feature extraction and a dilated CNN for the back-end, which uses dilated kernels to deliver larger reception fields and to replace pooling operations. CSRNet is an easy-trained model because of its pure convolutional structure. We demonstrate CSRNet on four datasets (ShanghaiTech dataset, the UCF_CC_50 dataset, the WorldEXPO'10 dataset, and the UCSD dataset) and we deliver the state-of-the-art performance. In the ShanghaiTech Part_B dataset, CSRNet achieves 47.3% lower Mean Absolute Error (MAE) than the previous state-of-the-art method. We extend the targeted applications for counting other objects, such as the vehicle in TRANCOS dataset. Results show that CSRNet significantly improves the output quality with 15.4% lower MAE than the previous state-of-the-art approach.

cs.CV↗

arXiv2018

Face Recognition with Hybrid Efficient Convolution Algorithms on FPGAs

Deep Convolutional Neural Networks have become a Swiss knife in solving critical artificial intelligence tasks. However, deploying deep CNN models for latency-critical tasks remains to be challenging because of the complex nature of CNNs. Recently, FPGA has become a favorable device to accelerate deep CNNs thanks to its high parallel processing capability and energy efficiency. In this work, we explore different fast convolution algorithms including Winograd and Fast Fourier Transform (FFT), and find an optimal strategy to apply them together on different types of convolutions. We also propose an optimization scheme to exploit parallelism on novel CNN architectures such as Inception modules in GoogLeNet. We implement a configurable IP-based face recognition acceleration system based on FaceNet using High-Level Synthesis. Our implementation on a Xilinx Ultrascale device achieves 3.75x latency speedup compared to a high-end NVIDIA GPU and surpasses previous FPGA results significantly.

cs.CV↗

arXiv2018

Acoustic Landmarks Contain More Information About the Phone String than Other Frames for Automatic Speech Recognition with Deep Neural Network Acoustic Model

Most mainstream Automatic Speech Recognition (ASR) systems consider all feature frames equally important. However, acoustic landmark theory is based on a contradictory idea, that some frames are more important than others. Acoustic landmark theory exploits quantal non-linearities in the articulatory-acoustic and acoustic-perceptual relations to define landmark times at which the speech spectrum abruptly changes or reaches an extremum; frames overlapping landmarks have been demonstrated to be sufficient for speech perception. In this work, we conduct experiments on the TIMIT corpus, with both GMM and DNN based ASR systems and find that frames containing landmarks are more informative for ASR than others. We find that altering the level of emphasis on landmarks by re-weighting acoustic likelihood tends to reduce the phone error rate (PER). Furthermore, by leveraging the landmark as a heuristic, one of our hybrid DNN frame dropping strategies maintained a PER within 0.44% of optimal when scoring less than half (45.8% to be precise) of the frames. This hybrid strategy out-performs other non-heuristic-based methods and demonstrate the potential of landmarks for reducing computation.

eess.AS↗