arXiv subjects

Dezső Boda

Publications and source records attributed to Dezső Boda.

At least 19 recordsLinked to original sources

arXiv2026

Multiscale Modeling of Ion Transport in Nanopores: Fitting Implicit-Water Radial Diffusion Profiles to Explicit-Water Molecular Dynamics

We develop a multiscale approach for incorporating molecular-scale transport information into computationally efficient models of ion transport through nanopores. A radially varying effective diffusion coefficient profile is fitted to radial conductivity profiles obtained from explicit-water molecular dynamics (MD) simulations. The fitting is performed within the NP+LEMC framework, which combines the Nernst--Planck equation with Local Equilibrium Monte Carlo to account for ion correlations beyond mean-field approximation. We apply the approach to NaCl, CaCl$_2$, and their mixtures in a negatively charged silica nanopore. The resulting diffusion coefficient profiles reproduce the radial current distributions of the MD simulations, including the strong suppression of ionic mobility near the pore wall that cannot be captured by a spatially constant diffusion coefficient inside the pore. NaCl and CaCl$_2$ exhibit qualitatively different transport behavior: the former is cation selective due to enhanced near-wall Na$^+$ conduction, whereas the latter shows weak anion selectivity because strongly bound Ca$^{2+}$ ions have strongly suppressed mobility near the surface. For NaCl--CaCl$_2$ mixtures, preferential Ca$^{2+}$ binding leads to nonlinear changes in ionic conductance. The approach establishes a bridge between experimentally relevant device behavior and computationally efficient reduced models, with explicit-water MD providing the molecular-scale information that can be incorporated into the effective transport coefficients.

cond-mat.mes-hall↗

arXiv2026

Modeling electrolytes in nanopores by Monte Carlo simulations and the Bazant--Storey--Kornyshev model

We study electrolyte-filled cylindrical nanopores through Monte Carlo (MC) simulations and the Bazant--Storey--Kornyshev model, for different ionic valencies, sizes, and bulk concentrations, pore radii and surface charge densities. Our model accounts for finite ion size through a Stern layer and we use de~Souza and Bazant's mechanical equilibrium principle to derive a boundary condition for the outer Helmholtz plane. For 1:1 electrolytes and moderate surface charge densities, we find that both the classical Poisson--Boltzmann--Stern (PB--Stern) and our Bazant--Storey--Kornyshev--Boltzmann--Stern (BSKB--Stern) model fit MC data well---for 2:1 and 3:1 electrolytes, the BSKB--Stern outperforms the PB-Stern model. Conversely, the BSKB--Stern model poorly fits MC data in other scenarios. First, BSKB--Stern does not capture drying and apparent like-charge attraction in 3:1 electrolytes and small surface charge densities. Second, BSKB--Stern only fits MC data for finely-tuned ionic diameters; for other ionic diameters, the ionic charge densities show oscillations or extended near-surface regions caused by ionic packing and strong Coulomb interactions, not captured by the BSKB--Stern model.

physics.chem-ph↗

arXiv2026

Interplay of ion availability and mobility in the loss of cation selectivity for CaCl\textsubscript{2} in negatively charged nanopores: molecular dynamics using scaled-charge models

Ion transport through charged nanopores is commonly interpreted in terms of electrical double layer structure, leading to the expectation of cation-selective conduction in negatively charged pores. This picture can break down for multivalent electrolytes, where strong ion-urface correlations and charge inversion modify transport behavior. Here, we study NaCl and CaCl$_2$ conduction through negatively charged silica nanopores using atomistic molecular dynamics simulations with scaled-charge ion models. By separating concentration and velocity contributions to the radial particle current density, we connect static adsorption to dynamic perm-selectivity. While NaCl exhibits conventional cation selectivity, CaCl$_2$ shows nearly bulk-like or even anion-favored transport due to Ca$^{2+}$ immobilization near the surface and dominant Cl$^-$ conduction in the pore interior following charge inversion. Although this qualitative mechanism is robust, its detailed manifestation depends sensitively on the balance of ion-surface and ion-water interactions encoded in the force field.

cond-mat.stat-mech↗

arXiv2026

The interplay of cation/anion and monovalent/divalent selectivity in negatively charged nanopores: local charge inversion and anion leakage

The anomalous mole fraction effect (AMFE) is widely regarded as a hallmark of calcium versus monovalent ion selectivity in negatively charged pores. While AMFE is well understood in highly cation-selective narrow ion channels, its microscopic origin in wide synthetic nanopores, where anions may also contribute to transport, remains less clear. Here, we use a reduced Nernst-Planck + Local Equilibrium Monte Carlo framework to study ionic transport in a negatively charged PET nanopore, with particular emphasis on how the modeling of surface carboxyl (COO$^{-}$) groups influences charge inversion, ionic currents, and AMFE. We systematically compare fixed point-charge models and explicit-particle representations of surface oxygens and identify two controlling parameters: the distance of closest approach (DCA) between ionic charges and pore charges and grid spacing that modulates localization (while keeping average surface charge constant). By fitting pore diffusion coefficients to three experimental conductance points, we reproduce the entire experimental AMFE curve as well as anion leakage in CaCl$_2$ seen in experiments and molecular dynamics simulations. Remarkably, vastly different microscopic models of the surface groups yield indistinguishable device-level conductance curves when the DCA is matched, despite substantial differences in local Ca$^{2+}$ concentration profiles. Our results demonstrate that AMFE in wide nanopores is governed by a delicate interplay between charge inversion, anion leakage, and ionic mobility, underlying that in wide pores monovalent vs.\ divalent cation selectivity is modulated by cations vs.\ anion selecivity.

cond-mat.mes-hall↗

arXiv2022

The Dukhin number as a scaling parameter for selectivity in the infinitely long nanopore limit: extension to multivalent electrolytes

Scaling of the behavior of a nanodevice means that the device function (selectivity, in this work) is a unique function of a scaling parameter that is an appropriate combination of the device parameters. Although nanopores facilitate the transport of ions through a membrane of finite length if the pore is long compared to the pore radius, we deal with an important limiting case, the infinitely long nanopore (nanotube). While in our previous study (Sarkadi et al., J. Chem. Phys. 154 (2021) 154704.) we showed that the Dukhin number is an appropriate scaling parameter in the nanotube limit for 1:1 electrolytes, in this work we obtain the Dukhin number from first principles on the basis of the Poisson-Boltzmann (PB) theory and generalize it to electrolytes containing multivalent ions as well. We show that grand canonical Monte Carlo simulations for charged hard spheres in an implicit solvent give results that are similar to those obtained from the PB theory with deviations that are the consequences of ionic correlations (including finite size of ions) beyond the mean-field level of the PB theory. Such a deviation occurs when charge inversion is present, in 2:2 and 3:1 electrolytes, for example.

cond-mat.soft↗

arXiv2021

Scaling for rectification of bipolar nanopores as a function of a modified Dukhin number: the case of 1:1 electrolytes

The scaling behavior for the rectification of bipolar nanopores is studied using the Nernst-Planck equation coupled to the Local Equilibrium Monte Carlo method. The bipolar nanopore's wall carries $σ$ and $-σ$ surface charge densities in its two half regions axially. Scaling means that the device function (rectification) depends on the system parameters (pore length, $H$, pore radius, $R$, concentration, $c$, voltage, $U$, and surface charge density, $σ$) via a single scaling parameter that is a smooth analytical function of the system parameters. Here, we suggest using a modified Dukhin number, $\mathrm{mDu}=|σ|l_{\mathrm{B}}^{*}λ_{\mathrm{D}}HU/(RU_{0})$, where $l_{\mathrm{B}}^{*}=8πl_{\mathrm{B}}$, $l_{\mathrm{B}}$ is the Bjerrum length, $λ_{\mathrm{D}}$ is the Debye length, and $U_{0}$ is a reference voltage. We show how scaling depends on $H$, $U$, and $σ$ and through what mechanisms these parameters influence the pore's behavior.

cond-mat.mes-hall↗

arXiv2021

The induced permittivity increment of electrorheological fluids in an applied electric field in association with chain formation: A Brownian Dynamics simulation study

We report Brownian Dynamics simulation results for the relative permittivity of electrorheological (ER) fluids in an applied electric field. The relative permittivity of an ER fluid can be calculated from the Clausius-Mosotti (CM) equation in the small applied field limit. When a strong field is applied, however, the ER spheres are organized into chains and assemblies of chains in which case the ER spheres are polarized not only by the external field but by each other. This manifests itself in an enhanced dielectric response, e.g., in an increase in the relative permittivity. The correction to the relative permittivity and the time dependence of this correction is simulated on the basis of a model in which the ER particles are represented as polarizable spheres. In this model, the spheres are also polarized by each other in addition to the applied field. Our results are qualitatively similar to those obtained by Horváth and Szalai experimentally (\textit{Phys. Rev. E}, \textbf{86}, 061403, 2012). We report characteristic time constants obtained from bi-exponential fits that can be associated with formation of pairs and short chains as well as with aggregation of chains. The electric field dependence of the induced dielectric increment reveals the same qualitative behavior that experiments did: three regions with different slopes corresponding to different aggregation processes are identified.

cond-mat.soft↗

arXiv2021

From nanotubes to nanoholes: scaling of selectivity in uniformly charged nanopores through the Dukhin number for 1:1 electrolytes

Scaling of the behavior of a nanodevice means that the device function (selectivity) is a unique smooth and monotonic function of a scaling parameter that is an appropriate combination of the system's parameters. For the uniformly charged cylindrical nanopore studied here these parameters are the electrolyte concentration, $c$, voltage, $U$, the radius and the length of the nanopore, $R$ and $H$, and the surface charge density on the nanopore's surface, $σ$. Due to the non-linear dependence of selectivites on these parameters, scaling can only be applied in certain limits. We show that the Dukhin number, $\mathrm{Du}=|σ|/eRc\sim |σ|λ_{\mathrm{D}}^{2}/eR$ ($λ_{\mathrm{D}}$ is the Debye length), is an appropriate scaling parameter in the nanotube limit ($H\rightarrow\infty$). Decreasing the length of the nanopore, namely, approaching the nanohole limit ($H\rightarrow 0$), an alternative scaling parameter has been obtained that contains the pore length and is called the modified Dukhin number: $\mathrm{mDu}\sim \mathrm{Du}\, H/λ_{\mathrm{D}}\sim |σ|λ_{\mathrm{D}}H/eR$. We found that the reason of non-linearity is that the double layers accumulating at the pore wall in the radial dimension correlate with the double layers accumulating at the entrances of the pore near the membrane on the two sides. Our modeling study using the Local Equilibrium Monte Carlo method and the Poisson-Nernst-Planck theory provides concentration, flux, and selectivity profiles, that show whether the surface or the volume conduction dominates in a given region of the nanopore for a given combination of the variables. We propose that the inflection point of the scaling curve may be used to characterize the transition point between the surface and volume conductions.

cond-mat.mes-hall↗

arXiv2020

Scaling of selectivity in uniformly charged nanopores through a modified Dukhin number for 1:1 electrolytes

We show that a modified version of the Dukhin number is an appropriate scaling parameter for the ionic selectivity of uniformly charged nanopores. The modified Dukhin number is an unambiguous function of the variables $σ$ (surface charge), $R$ (pore radius), and $c$ (salt concentration), and defined as $\mathrm{mDu}=|σ|/e(R/λ)$, where $λ$ is the screening length of the electrolyte carrying the $c$ dependence ($λ\sim c^{-1/2}$). Scaling means that the device function (selectivity) is a smooth and (in this case) monotonic function of mDu. The original Dukhin number defined as $\mathrm{Du}=|σ|/eRc$ ($c^{-1}$ dependence) was introduced to indicate whether the surface or the volume conduction is dominant in the pore. The modified version satisfies scaling and characterizes selectivity in the intermediate regime, where both surface and bulk conductions are present and the pore is neither perfectly selective, nor perfectly non-selective. Our modeling study using the Local Equilibrium Monte Carlo method and the Poisson-Nernst-Planck theory provides the radial flux profiles from which the radial selectivity profile can be computed. These profiles show in which region of the nanopore the surface or the volume conduction dominates for a given combination of the variables $σ$, $R$, and $c$. We show that the inflection point of the scaling curve may be used to characterize the transition point between the surface and volume conductions.

cond-mat.mes-hall↗

arXiv2020

Rectification of bipolar nanopores in multivalent electrolytes: effect of charge inversion and strong ionic correlations

Bipolar nanopores have powerful rectification properties due to the asymmetry in the charge pattern on the wall of the nanopore. In particular, bipolar nanopores have positive and negative surface charges along the pore axis. Rectification is strong if the radius of the nanopore is small compared to the screening length of the electrolyte so that both cations and anions have depletion zones in the respective regions. The depths of these depletion zones is sensitive to sign of the external voltage. In this work, we are interested in the effect of the presence of strong ionic correlations (both between ions and between ions and surface charge) due to the presence of multivalent ions and large surface charges. We show that strong ionic correlations cause leakage of the coions, a phenomenon that is absent in mean field theories. In this modeling study, we use both the mean-field Poisson-Nernst-Planck (PNP) theory and a particle simulation method, Local Equilibrium Monte Carlo (LEMC), to show that phenomena such as overcharging and charge inversion cannot be reproduced with PNP, while LEMC is able to produce nonmonotonic dependence of currents and rectification as a function of surface charge strength.

cond-mat.soft↗

arXiv2020

A systematic study of the dynamics of chain formation in electrorheological fluids

We report a systematic study of the dynamics of chain formation in electrorheological (ER) fluids using Brownian Dynamics simulations. The parameters of the system such as applied electric field, polarizability, dipole moment, friction coefficient, and number density are expressed in reduced units and changed in a wide range in order to map the system's behavior as a function of them. We define time constants obtained from bi-exponential fits to time dependence of various physical quantities such as dipolar energy, diffusion constant, and average chain length. The smaller time constant is associated with the formation of shorter chains (pairs, triplets, and so on), while the larger time constant is associated with the formation of longer chains in the regime of those that overarch the simulation cell. We use the approximation that the dipole moments are induced by the applied electric field only, as usual in the literature. However, we report preliminary results for the case when particle-particle polarization is also possible.

cond-mat.mtrl-sci↗

arXiv2019

Scaling Behavior of Bipolar Nanopore Rectification with Multivalent Ions

We present a scaling behavior of a rectifying bipolar nanopore as a function of the parameter $ξ=R_{\mathrm{P}}/(λz_{\mathrm{if}})$, where $R_{\mathrm{P}}$ is the radius of the pore, $λ$ is the characteristic screening length of the electrolyte filling the pore, and $z_{\mathrm{if}}=\sqrt{z_{+}|z_{-}|}$ is a scaling factor that makes scaling work for electrolytes containing multivalent ions ($z_{+}$ and $z_{-}$ are cation and the anion valences). By scaling we mean that the rectification of the pore (defined as the ratio of currents in the forward and reversed biased states) depends on pore radius, concentration, $c$, and ion valences via the parameter $ξ$ implicitly. This feature is based on the fact that rectification depends on the voltage-sensitive appearance of depletion zones that, in turn, depend on the relation of $R_{\mathrm{P}}$ to the rescaled screening length $λz_{\mathrm{if}}$. In this modeling study, we use the Poisson-Nernst-Planck (PNP) theory and a particle simulation method, the Local Equilibrium Monte Carlo (LEMC). The latter can compute ion correlations that are ignored in the mean-field treatment of PNP and that are very important for multivalent ions (we show results for 1:1, 2:1, 3:1, and 2:2 electrolytes). In addition to the $z_{\mathrm{if}}$ factor, we show that one must choose a screening length appropriate to the system, in our case the Debye length for $λ$ for PNP and the screening length given by the Mean Spherical Approximation for LEMC.

cond-mat.mes-hall↗

arXiv2019

Application of a bipolar nanopore as a sensor: rectification as an additional device function

We model and simulate a nanopore sensor that selectively binds analyte ions. This binding leads to the modulation of the local concentrations of the ions of the background electrolyte (KCl), and, thus, to the modulation of the ionic current flowing through the pore. The nanopore's wall carries a bipolar charge pattern with a larger positive buffer region determining the anions as the main charge carriers and the smaller negative binding region containing binding sites. This charge pattern proved to be an appropriate one as shown by a previous comparative study of varying charge patterns (Mádai et al.\ \textit{J. Mol. Liq.}, 2019, \textbf{283}, 391--398.). Binding of the positive analyte ions attracts more anions in the pore thus increasing the current. The asymmetric nature of the pore results in an additional device function, rectification. Our model, therefore, is a dual response device. Using a reduced model of the nanopore studied by a hybrid computer simulation method (Local Equilibrium Monte Carlo coupled to the Nernst-Planck equation) we show that we can create a sensor whose underlying mechanisms are based on the changes of the local electric field as a response to changing thermodynamic conditions. The change of the electric field results in changes in the local ionic concentrations (depletion zones), and, thus, changes in ionic currents.

physics.app-ph↗

arXiv2019

Multiscale analysis of the effect of surface charge pattern on a nanopore's rectification and selectivity properties: from all-atom model to Poisson-Nernst-Planck

We report a multiscale modeling study for charged cylindrical nanopores using three modeling levels that include (1) an all-atom explicit-water model studied with molecular dynamics (MD), and reduced models with implicit water containing (2) hard-sphere ions studied with the Local Equilibrium Monte Carlo simulation method (computing ionic correlations accurately), and (3) point ions studied with Poisson-Nernst-Planck (PNP) theory (mean-field approximation). We show that reduced models are able to reproduce device functions (rectification and selectivity) for a wide variety of charge patterns; that is, reduced models are useful in understanding the mesoscale physics of the device (i.e., how the current is produced). We also analyze the relationship of the reduced implicit-water models with the explicit-water model and show that diffusion coefficients in the reduced models can be used as adjustable parameters with which the results of the explicit- and implicit-water models can be related. We find that the values of the diffusion coefficients are sensitive to the net charge of the pore, but are relatively transferable to different voltages and charge patterns with the same total charge.

cond-mat.mes-hall↗

arXiv2018

Controlling ionic current through a nanopore by tuning pH: a Local Equilibrium Monte Carlo study

The purpose of this work is to create a model of a nanofluidic transistor which is able to mimic the effects of pH on nanopore conductance. The pH of the electrolyte is an experimentally controllable parameter through which the charge pattern can be tuned: pH affects the ratio of the protonated/deprotonated forms of the functional groups anchored to the surface of the nanopore (for example, amino and carboxyl groups). Thus, the behavior of the bipolar transistor changes as it becomes ion selective in acidic/basic environments. We relate the surface charge to pH and perform particle simulations (Local Equilibrium Monte Carlo) with different nanopore geometries (cylindrical and double conical). The simulations form a self consistent system with the Nernst-Planck equation with which we compute ionic flux. We discuss the mechanism behind pH-control of ionic current: formation of depletion zones.

cond-mat.mes-hall↗

arXiv2018

The effect of the charge pattern on the applicability of a nanopore as a sensor

We investigate a model nanopore sensor that is able to detect analyte ions that are present in the electrolyte solution in very small concentrations. The nanopore selectively binds the analyte ions with which the local concentrations of the ions of the background electrolyte (KCl), and, thus, the ionic current flowing through the pore is changed. Analyte concentration can be determined from calibration curves. In our previous study (Mádai et al. J. Chem. Phys., 147(24):244702, 2017.), we proposed a symmetric model (surface charge is negative all along the pore). The mechanism of sensing was a competition between K$^{+}$ and positive analyte ions, so increasing analyte concentration decreased K$^{+}$ current. Here we allow asymmetric charge patterns on the pore wall (positive/negative/neutral along the pore), thus, gaining an additional device function, rectification, resulting in a dual responsive device. We find that a bipolar nanopore is an efficient geometry with Cl$^{-}$ ions being the main charge carriers. The mechanism of sensing is that more positive analyte ions attract more Cl$^{-}$ ions into the pore thus increasing the current. Also they make the pore less asymmetric and, thus, decrease rectification. We use a hybrid computer simulation method, where a generalization of the grand canonical Monte Carlo method to non-equilibrium (Local Equilibrium Monte Carlo) is coupled to the Nernst-Planck equation with which the flux is computed.

physics.app-ph↗

arXiv2018

Controlling ion transport through nanopores: modeling transistor behavior

We present a modeling study of a nanopore-based transistor computed by a mean-field continuum theory (Poisson-Nernst-Planck, PNP) and a hybrid method including particle simulation (Local Equilibrium Monte Carlo, LEMC) that is able to take ionic correlations into account including finite size of ions. The model is composed of three regions along the pore axis with the left and right regions determining the ionic species that is the main charge carrier, and the central region tuning the concentration of that species and, thus, the current flowing through the nanopore. We consider a model of small dimensions with the pore radius comparable to the Debye-screening length ($R_{\mathrm{pore}}/λ_{\mathrm{D}}\approx 1$), which, together with large surface charges provides a mechanism for creating depletion zones and, thus, controlling ionic current through the device. We report scaling behavior of the device as a function the $R_{\mathrm{pore}}/λ_{\mathrm{D}}$ parameter. Qualitative agreement between PNP and LEMC results indicates that mean-field electrostatic effects determine device behavior to the first order.

cond-mat.mes-hall↗

arXiv2017

A systematic Monte Carlo simulation study of the primitive model electrical double layer over an extended range of concentrations, electrode charges, cation diameters and valences

The purpose of this study is to provide data for the primitive model of the electrical double layer, where ions are modeled as charged hard spheres, the solvent as an implicit dielectric background (with dielectric constant $ε= 78.5$), and the electrode as a smooth, uniformly charged, hard wall. We use canonical and Grand Canonical Monte Carlo simulations to compute the concentration profiles, from which the electric field and electrostatic potential profiles are obtained by solving Poisson's equation. We report data for an extended range of parameters including 1:1, 2:1, and 3:1 electrolytes at concentrations $c=0.0001-1$ M near electrodes carrying surface charges up to $σ=\pm 0.5$ Cm$^{-2}$. The anions are monovalent with a fixed diameter $d_{-}=3$ Å, while the charge and diameter of cations are varied in the range $z_{+}=1$, 2, 3 and $d_{+}=1.5$, 3, 6, and 9 Å (the temperature is $298.15$ K). We provide all the raw data in the Supporting Information.

cond-mat.soft↗