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Di Guo

Publications and source records attributed to Di Guo.

At least 55 records · Page 3Linked to original sources

Bloch Equation Enables Physics-informed Neural Network in Parametric Magnetic Resonance Imaging

Magnetic resonance imaging (MRI) is an important non-invasive imaging method in clinical diagnosis. Beyond the common image structures, parametric imaging can provide the intrinsic tissue property thus could be used in quantitative evaluation. The emerging deep learning approach provides fast and accurate parameter estimation but still encounters the lack of network interpretation and enough training data. Even with a large amount of training data, the mismatch between the training and target data may introduce errors. Here, we propose one way that solely relies on the target scanned data and does not need a pre-defined training database. We provide a proof-of-concept that embeds the physical rule of MRI, the Bloch equation, into the loss of physics-informed neural network (PINN). PINN enables learning the Bloch equation, estimating the T2 parameter, and generating a series of physically synthetic data. Experimental results are conducted on phantom and cardiac imaging to demonstrate its potential in quantitative MRI.

eess.IV↗

CloudBrain-NMR: An Intelligent Cloud Computing Platform for NMR Spectroscopy Processing, Reconstruction and Analysis

Nuclear Magnetic Resonance (NMR) spectroscopy has served as a powerful analytical tool for studying molecular structure and dynamics in chemistry and biology. However, the processing of raw data acquired from NMR spectrometers and subsequent quantitative analysis involves various specialized tools, which necessitates comprehensive knowledge in programming and NMR. Particularly, the emerging deep learning tools is hard to be widely used in NMR due to the sophisticated setup of computation. Thus, NMR processing is not an easy task for chemist and biologists. In this work, we present CloudBrain-NMR, an intelligent online cloud computing platform designed for NMR data reading, processing, reconstruction, and quantitative analysis. The platform is conveniently accessed through a web browser, eliminating the need for any program installation on the user side. CloudBrain-NMR uses parallel computing with graphics processing units and central processing units, resulting in significantly shortened computation time. Furthermore, it incorporates state-of-the-art deep learning-based algorithms offering comprehensive functionalities that allow users to complete the entire processing procedure without relying on additional software. This platform has empowered NMR applications with advanced artificial intelligence processing. CloudBrain-NMR is openly accessible for free usage at https://csrc.xmu.edu.cn/CloudBrain.html

q-bio.QM↗

CloudBrain-MRS: An Intelligent Cloud Computing Platform for in vivo Magnetic Resonance Spectroscopy Preprocessing, Quantification, and Analysis

Magnetic resonance spectroscopy (MRS) is an important clinical imaging method for diagnosis of diseases. MRS spectrum is used to observe the signal intensity of metabolites or further infer their concentrations. Although the magnetic resonance vendors commonly provide basic functions of spectra plots and metabolite quantification, the widespread clinical research of MRS is still limited due to the lack of easy-to-use processing software or platform. To address this issue, we have developed CloudBrain-MRS, a cloud-based online platform that provides powerful hardware and advanced algorithms. The platform can be accessed simply through a web browser, without the need of any program installation on the user side. CloudBrain-MRS also integrates the classic LCModel and advanced artificial intelligence algorithms and supports batch preprocessing, quantification, and analysis of MRS data from different vendors. Additionally, the platform offers useful functions: 1) Automatically statistical analysis to find biomarkers for diseases; 2) Consistency verification between the classic and artificial intelligence quantification algorithms; 3) Colorful three-dimensional visualization for easy observation of individual metabolite spectrum. Last, both healthy and mild cognitive impairment patient data are used to demonstrate the functions of the platform. To the best of our knowledge, this is the first cloud computing platform for in vivo MRS with artificial intelligence processing. We have shared our cloud platform at MRSHub, providing free access and service for two years. Please visit https://mrshub.org/software_all/#CloudBrain-MRS or https://csrc.xmu.edu.cn/CloudBrain.html.

eess.SP↗

A Dynamics Theory of Implicit Regularization in Deep Low-Rank Matrix Factorization

Implicit regularization is an important way to interpret neural networks. Recent theory starts to explain implicit regularization with the model of deep matrix factorization (DMF) and analyze the trajectory of discrete gradient dynamics in the optimization process. These discrete gradient dynamics are relatively small but not infinitesimal, thus fitting well with the practical implementation of neural networks. Currently, discrete gradient dynamics analysis has been successfully applied to shallow networks but encounters the difficulty of complex computation for deep networks. In this work, we introduce another discrete gradient dynamics approach to explain implicit regularization, i.e. landscape analysis. It mainly focuses on gradient regions, such as saddle points and local minima. We theoretically establish the connection between saddle point escaping (SPE) stages and the matrix rank in DMF. We prove that, for a rank-R matrix reconstruction, DMF will converge to a second-order critical point after R stages of SPE. This conclusion is further experimentally verified on a low-rank matrix reconstruction problem. This work provides a new theory to analyze implicit regularization in deep learning.

cs.LG↗

Heterogeneous Embodied Multi-Agent Collaboration

Multi-agent embodied tasks have recently been studied in complex indoor visual environments. Collaboration among multiple agents can improve work efficiency and has significant practical value. However, most of the existing research focuses on homogeneous multi-agent tasks. Compared with homogeneous agents, heterogeneous agents can leverage their different capabilities to allocate corresponding sub-tasks and cooperate to complete complex tasks. Heterogeneous multi-agent tasks are common in real-world scenarios, and the collaboration strategy among heterogeneous agents is a challenging and important problem to be solved. To study collaboration among heterogeneous agents, we propose the heterogeneous multi-agent tidying-up task, in which multiple heterogeneous agents with different capabilities collaborate with each other to detect misplaced objects and place them in reasonable locations. This is a demanding task since it requires agents to make the best use of their different capabilities to conduct reasonable task planning and complete the whole task. To solve this task, we build a heterogeneous multi-agent tidying-up benchmark dataset in a large number of houses with multiple rooms based on ProcTHOR-10K. We propose the hierarchical decision model based on misplaced object detection, reasonable receptacle prediction, as well as the handshake-based group communication mechanism. Extensive experiments are conducted to demonstrate the effectiveness of the proposed model. The project's website and videos of experiments can be found at https://hetercol.github.io/.

cs.CV↗

Convex Dual Theory Analysis of Two-Layer Convolutional Neural Networks with Soft-Thresholding

Soft-thresholding has been widely used in neural networks. Its basic network structure is a two-layer convolution neural network with soft-thresholding. Due to the network's nature of nonlinearity and nonconvexity, the training process heavily depends on an appropriate initialization of network parameters, resulting in the difficulty of obtaining a globally optimal solution. To address this issue, a convex dual network is designed here. We theoretically analyze the network convexity and numerically confirm that the strong duality holds. This conclusion is further verified in the linear fitting and denoising experiments. This work provides a new way to convexify soft-thresholding neural networks.

cs.LG↗

Study of $X(6900)$ with unitarized coupled channel scattering amplitudes

In this paper, we study the resonant state $X(6900)$. The scattering amplitudes of coupled channels, $J/ψJ/ψ$-$J/ψψ(2S)$-$J/ψψ(3770)$, are constructed with the interaction of four vector mesons described by effective Lagrangians. The amplitudes are calculated up to one loop, decomposed by partial wave projection, and unitarized by Pad$\acute{e}$ approximation. These amplitudes are fitted to the latest experimental data sets of di-$J/ψ$ and $J/ψψ(2S)$ invariant mass spectra of LHCb, CMS, and ATLAS. High-quality solutions are obtained. With these partial wave amplitudes, we extract the pole parameters of the $X(6900)$. Its quantum number is likely to be $0^{++}$. According to the pole counting rule as well as analysis of the phase shifts of the partial waves, it supports our previous conclusion that the $X(6900)$ prefers to be a compact tetra-quark.

hep-ph↗

Deep Reinforcement Learning for Robotic Pushing and Picking in Cluttered Environment

In this paper, a novel robotic grasping system is established to automatically pick up objects in cluttered scenes. A composite robotic hand composed of a suction cup and a gripper is designed for grasping the object stably. The suction cup is used for lifting the object from the clutter first and the gripper for grasping the object accordingly. We utilize the affordance map to provide pixel-wise lifting point candidates for the suction cup. To obtain a good affordance map, the active exploration mechanism is introduced to the system. An effective metric is designed to calculate the reward for the current affordance map, and a deep Q-Network (DQN) is employed to guide the robotic hand to actively explore the environment until the generated affordance map is suitable for grasping. Experimental results have demonstrated that the proposed robotic grasping system is able to greatly increase the success rate of the robotic grasping in cluttered scenes.

cs.RO↗

MQA: Answering the Question via Robotic Manipulation

In this paper, we propose a novel task, Manipulation Question Answering (MQA), where the robot performs manipulation actions to change the environment in order to answer a given question. To solve this problem, a framework consisting of a QA module and a manipulation module is proposed. For the QA module, we adopt the method for the Visual Question Answering (VQA) task. For the manipulation module, a Deep Q Network (DQN) model is designed to generate manipulation actions for the robot to interact with the environment. We consider the situation where the robot continuously manipulating objects inside a bin until the answer to the question is found. Besides, a novel dataset that contains a variety of object models, scenarios and corresponding question-answer pairs is established in a simulation environment. Extensive experiments have been conducted to validate the effectiveness of the proposed framework.

cs.AI↗

Structure around $p\bar{p}$ threshold in $J/ψ$ radiative decays

In this paper, we study the structure around the $p\bar{p}$ threshold that appears in $η'π^+π^-$, $3(π^+π^-)$ and $K_S^0K_S^0η$ invariant mass spectra in the processes of relevant $J/ψ$ radiative decays. The $N\bar{N}$ rescattering is taken into account, and the distorted-wave Born approximation is applied to get the decaying amplitude through a two-step process: $J/ψ\toγN\bar{N}\toγη'π^+π^-$, $γ3(π^+π^-)$ and $γK_S^0K_S^0η$. The $N\bar{N}$ scattering amplitudes are obtained by solving the Lippmann-Schwinger equation with the potentials given by chiral effective field theory. To fix the unknown couplings, we fit the amplitudes to the datasets of the latest measurements on the invariant mass spectra of $J/ψ$ radiative decays, as well as the phase shifts and inelasticities given by partial wave analysis. We vary the cutoffs ($R$=0.9, 1.0, and 1.1 fm) and find that the solutions are stable. The structures around $p\bar{p}$ threshold found in the processes of $J/ψ\toγη'π^+π^-$, $J/ψ\to\gamma3(π^+π^-)$ and $J/ψ\toγK_S^0K_S^0η$ can be attributed to threshold behavior of $N\bar{N}$ intermediate states.

hep-ph↗

Nature of the $X(6900)$ in partial wave decomposition of $J/ψJ/ψ$ scattering

In this letter, we perform partial wave decomposition on coupled-channel scattering amplitudes, $J/ψJ/ψ$-$J/ψψ(2S)$-$J/ψψ(3770)$, to study the resonance appears in these processes. Effective Lagrangians are used to describe the interactions of four charmed vector mesons, and the scattering amplitudes are calculated up to the next-to-leading order. Partial wave projections are performed, and unitarization is implemented by Padé approximation. Then we fit the amplitudes to the $J/ψJ/ψ$ invariant mass spectra measured by LHCb and determine the unknown couplings. The pole parameters of the $X(6900)$ are extracted as $M=6861.0^{+6.3}_{-8.8}$~MeV and $Γ=129.0^{+5.6}_{-3.4}$~MeV. Our analysis implies that its quantum number prefers to be $0^{++}$. The pole counting rule and phase shifts show that it is a normal Breit-Wigner resonance and, hence, should be a compact tetraquark.

hep-ph↗

A Paired Phase and Magnitude Reconstruction for Advanced Diffusion-Weighted Imaging

Objective: Multi-shot interleaved echo planer imaging can obtain diffusion-weighted images (DWI) with high spatial resolution and low distortion, but suffers from ghost artifacts introduced by phase variations between shots. In this work, we aim at solving the challenging reconstructions under inter-shot motions between shots and a low signal-to-noise ratio. Methods: An explicit phase model with paired phase and magnitude priors is proposed to regularize the reconstruction (PAIR). The former prior is derived from the smoothness of the shot phase and enforced with low-rankness in the k-space domain. The latter explores similar edges among multi-b-value and multi-direction DWI with weighted total variation in the image domain. Results: Extensive simulation and in vivo results show that PAIR can remove ghost artifacts very well under a high number of shots (8 shots) and significantly suppress the noise under the ultra-high b-value (4000 s/mm2). Conclusion: The explicit phase model PAIR with complementary priors has a good performance on challenging reconstructions under inter-shot motions between shots and a low signal-to-noise ratio. Significance: PAIR has great potential in advanced clinical DWI applications and brain function research.

eess.SP↗

Magnetic Resonance Spectroscopy Deep Learning Denoising Using Few In Vivo Data

Magnetic Resonance Spectroscopy (MRS) is a noninvasive tool to reveal metabolic information. One challenge of 1H-MRS is the low Signal-Noise Ratio (SNR). To improve the SNR, a typical approach is to perform Signal Averaging (SA) with M repeated samples. The data acquisition time, however, is increased by M times accordingly, and a complete clinical MRS scan takes approximately 10 minutes at a common setting M=128. Recently, deep learning has been introduced to improve the SNR but most of them use the simulated data as the training set. This may hinder the MRS applications since some potential differences, such as acquisition system imperfections, and physiological and psychologic conditions may exist between the simulated and in vivo data. Here, we proposed a new scheme that purely used the repeated samples of realistic data. A deep learning model, Refusion Long Short-Term Memory (ReLSTM), was designed to learn the mapping from the low SNR time-domain data (24 SA) to the high SNR one (128 SA). Experiments on the in vivo brain spectra of 7 healthy subjects, 2 brain tumor patients and 1 cerebral infarction patient showed that only using 20% repeated samples, the denoised spectra by ReLSTM could provide comparable estimated concentrations of metabolites to 128 SA. Compared with the state-of-the-art low-rank denoising method, the ReLSTM achieved the lower relative error and the Cramér-Rao lower bounds in quantifying some important biomarkers. In summary, ReLSTM can perform high-fidelity denoising of the spectra under fast acquisition (24 SA), which would be valuable to MRS clinical studies.

physics.med-ph↗

The Miniature Optical Transmitter and Transceiver For the High-Luminosity LHC (HL-LHC) experiments

We present the design and test results of the Miniature optical Transmitter (MTx) and Transceiver (MTRx) for the high luminosity LHC (HL-LHC) experiments. MTx and MTRx are Transmitter Optical Subassembly (TOSA) and Receiver Optical Subassembly (ROSA) based. There are two major developments: the Vertical Cavity Surface Emitting Laser (VCSEL) driver ASIC LOCld and the mechanical latch that provides the connection to fibers. In this paper, we concentrate on the justification of this work, the design of the latch and the test results of these two modules with a Commercial Off-The-Shelf (COTS) VCSEL driver.

physics.ins-det↗

A line code with quick-resynchronization capability and low latency for the optical data links of LHC experiments

We propose a line code that has fast resynchronization capability and low latency. Both the encoder and decoder have been implemented in FPGAs. The encoder has also been implemented in an ASIC. The latency of the whole optical link (not including the optical fiber) is estimated to be less than 73.9 ns. In the case of radiation-induced link synchronization loss, the decoder can recover the synchronization in 25 ns. The line code will be used in the ATLAS liquid argon calorimeter Phase-I trigger upgrade and can also be potentially used in other LHC experiments.

physics.ins-det↗

Component Prototypes towards a Low-Latency, Small-form-factor Optical Link for the ATLAS Liquid Argon Calorimeter Phase-I Trigger Upgrade

This paper presents several component prototypes towards a low-latency, small-form-factor optical link designed for the ATLAS Liquid Argon Calorimeter Phase-I trigger upgrade. A prototype of the custom-made dual-channel optical transmitter module, the Miniature optical Transmitter (MTx), with separate transmitter optical sub-assemblies (TOSAs) has been demonstrated at data rates up to 8 Gbps per channel. A Vertical-Cavity Surface-Emitting Laser (VCSEL) driver ASIC has been developed and is used in the current MTx prototypes. A serializer ASIC prototype, operating at up to 8 Gbps per channel, has been designed and tested. A low-latency, low-overhead encoder ASIC prototype has been designed and tested. The latency of the whole link, including the transmitter latency and the receiver latency but not the latency of the fiber, is estimated to be less than 57.9 ns. The size of the MTx is 45 mm x 15 mm x 6 mm.

physics.ins-det↗

Self-supervised 3D Semantic Representation Learning for Vision-and-Language Navigation

In the Vision-and-Language Navigation task, the embodied agent follows linguistic instructions and navigates to a specific goal. It is important in many practical scenarios and has attracted extensive attention from both computer vision and robotics communities. However, most existing works only use RGB images but neglect the 3D semantic information of the scene. To this end, we develop a novel self-supervised training framework to encode the voxel-level 3D semantic reconstruction into a 3D semantic representation. Specifically, a region query task is designed as the pretext task, which predicts the presence or absence of objects of a particular class in a specific 3D region. Then, we construct an LSTM-based navigation model and train it with the proposed 3D semantic representations and BERT language features on vision-language pairs. Experiments show that the proposed approach achieves success rates of 68% and 66% on the validation unseen and test unseen splits of the R2R dataset respectively, which are superior to most of RGB-based methods utilizing vision-language transformers.

cs.CV↗

A Sparse Model-inspired Deep Thresholding Network for Exponential Signal Reconstruction -- Application in Fast Biological Spectroscopy

The non-uniform sampling is a powerful approach to enable fast acquisition but requires sophisticated reconstruction algorithms. Faithful reconstruction from partial sampled exponentials is highly expected in general signal processing and many applications. Deep learning has shown astonishing potential in this field but many existing problems, such as lack of robustness and explainability, greatly limit its applications. In this work, by combining merits of the sparse model-based optimization method and data-driven deep learning, we propose a deep learning architecture for spectra reconstruction from undersampled data, called MoDern. It follows the iterative reconstruction in solving a sparse model to build the neural network and we elaborately design a learnable soft-thresholding to adaptively eliminate the spectrum artifacts introduced by undersampling. Extensive results on both synthetic and biological data show that MoDern enables more robust, high-fidelity, and ultra-fast reconstruction than the state-of-the-art methods. Remarkably, MoDern has a small number of network parameters and is trained on solely synthetic data while generalizing well to biological data in various scenarios. Furthermore, we extend it to an open-access and easy-to-use cloud computing platform (XCloud-MoDern), contributing a promising strategy for further development of biological applications.

cs.LG↗