arXiv subjects

Dilip Krishnan

Publications and source records attributed to Dilip Krishnan.

At least 19 recordsLinked to original sources

arXiv2024

JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data

Motivation: A major challenge in metabolomics is annotation: assigning molecular structures to mass spectral fragmentation patterns. Despite recent advances in molecule-to-spectra and in spectra-to-molecular fingerprint prediction (FP), annotation rates remain low. Results: We introduce in this paper a novel paradigm (JESTR) for annotation. Unlike prior approaches that explicitly construct molecular fingerprints or spectra, JESTR leverages the insight that molecules and their corresponding spectra are views of the same data and effectively embeds their representations in a joint space. Candidate structures are ranked based on cosine similarity between the embeddings of query spectrum and each candidate. We evaluate JESTR against mol-to-spec and spec-to-FP annotation tools on three datasets. On average, for rank@[1-5], JESTR outperforms other tools by 23.6%-71.6%. We further demonstrate the strong value of regularization with candidate molecules during training, boosting rank@1 performance by 11.4% and enhancing the model's ability to discern between target and candidate molecules. When comparing JESTR's performance against that of publicly available pretrained models of SIRIUS and CFM-ID on appropriate subsets of MassSpecGym benchmark dataset, JESTR outperforms these tools by 31% and 238%, respectively. Through JESTR, we offer a novel promising avenue towards accurate annotation, therefore unlocking valuable insights into the metabolome.

q-bio.QM↗

arXiv2024

Denoising Vision Transformers

We study a crucial yet often overlooked issue inherent to Vision Transformers (ViTs): feature maps of these models exhibit grid-like artifacts, which hurt the performance of ViTs in downstream dense prediction tasks such as semantic segmentation, depth prediction, and object discovery. We trace this issue down to the positional embeddings at the input stage. To mitigate this, we propose a two-stage denoising approach, termed Denoising Vision Transformers (DVT). In the first stage, we separate the clean features from those contaminated by positional artifacts by enforcing cross-view feature consistency with neural fields on a per-image basis. This per-image optimization process extracts artifact-free features from raw ViT outputs, providing clean feature estimates for offline applications. In the second stage, we train a lightweight transformer block to predict clean features from raw ViT outputs, leveraging the derived estimates of the clean features as supervision. Our method, DVT, does not require re-training the existing pre-trained ViTs, and is immediately applicable to any Vision Transformer architecture. We evaluate our method on a variety of representative ViTs (DINO, DeiT-III, EVA02, CLIP, DINOv2, DINOv2-reg) and demonstrate that DVT consistently improves existing state-of-the-art general-purpose models in semantic and geometric tasks across multiple datasets. We hope our study will encourage a re-evaluation of ViT design, especially regarding the naive use of positional embeddings. Our code and checkpoints are publicly available.

cs.CV↗

arXiv2023

Learning Vision from Models Rivals Learning Vision from Data

We introduce SynCLR, a novel approach for learning visual representations exclusively from synthetic images and synthetic captions, without any real data. We synthesize a large dataset of image captions using LLMs, then use an off-the-shelf text-to-image model to generate multiple images corresponding to each synthetic caption. We perform visual representation learning on these synthetic images via contrastive learning, treating images sharing the same caption as positive pairs. The resulting representations transfer well to many downstream tasks, competing favorably with other general-purpose visual representation learners such as CLIP and DINO v2 in image classification tasks. Furthermore, in dense prediction tasks such as semantic segmentation, SynCLR outperforms previous self-supervised methods by a significant margin, e.g., improving over MAE and iBOT by 6.2 and 4.3 mIoU on ADE20k for ViT-B/16.

cs.CV↗

arXiv2023

Scaling Laws of Synthetic Images for Model Training ... for Now

Recent significant advances in text-to-image models unlock the possibility of training vision systems using synthetic images, potentially overcoming the difficulty of collecting curated data at scale. It is unclear, however, how these models behave at scale, as more synthetic data is added to the training set. In this paper we study the scaling laws of synthetic images generated by state of the art text-to-image models, for the training of supervised models: image classifiers with label supervision, and CLIP with language supervision. We identify several factors, including text prompts, classifier-free guidance scale, and types of text-to-image models, that significantly affect scaling behavior. After tuning these factors, we observe that synthetic images demonstrate a scaling trend similar to, but slightly less effective than, real images in CLIP training, while they significantly underperform in scaling when training supervised image classifiers. Our analysis indicates that the main reason for this underperformance is the inability of off-the-shelf text-to-image models to generate certain concepts, a limitation that significantly impairs the training of image classifiers. Our findings also suggest that scaling synthetic data can be particularly effective in scenarios such as: (1) when there is a limited supply of real images for a supervised problem (e.g., fewer than 0.5 million images in ImageNet), (2) when the evaluation dataset diverges significantly from the training data, indicating the out-of-distribution scenario, or (3) when synthetic data is used in conjunction with real images, as demonstrated in the training of CLIP models.

cs.CV↗

arXiv2023

Improve Supervised Representation Learning with Masked Image Modeling

Training visual embeddings with labeled data supervision has been the de facto setup for representation learning in computer vision. Inspired by recent success of adopting masked image modeling (MIM) in self-supervised representation learning, we propose a simple yet effective setup that can easily integrate MIM into existing supervised training paradigms. In our design, in addition to the original classification task applied to a vision transformer image encoder, we add a shallow transformer-based decoder on top of the encoder and introduce an MIM task which tries to reconstruct image tokens based on masked image inputs. We show with minimal change in architecture and no overhead in inference that this setup is able to improve the quality of the learned representations for downstream tasks such as classification, image retrieval, and semantic segmentation. We conduct a comprehensive study and evaluation of our setup on public benchmarks. On ImageNet-1k, our ViT-B/14 model achieves 81.72% validation accuracy, 2.01% higher than the baseline model. On K-Nearest-Neighbor image retrieval evaluation with ImageNet-1k, the same model outperforms the baseline by 1.32%. We also show that this setup can be easily scaled to larger models and datasets. Code and checkpoints will be released.

cs.CV↗

arXiv2023

Leveraging Unpaired Data for Vision-Language Generative Models via Cycle Consistency

Current vision-language generative models rely on expansive corpora of paired image-text data to attain optimal performance and generalization capabilities. However, automatically collecting such data (e.g. via large-scale web scraping) leads to low quality and poor image-text correlation, while human annotation is more accurate but requires significant manual effort and expense. We introduce $\textbf{ITIT}$ ($\textbf{I}$n$\textbf{T}$egrating $\textbf{I}$mage $\textbf{T}$ext): an innovative training paradigm grounded in the concept of cycle consistency which allows vision-language training on unpaired image and text data. ITIT is comprised of a joint image-text encoder with disjoint image and text decoders that enable bidirectional image-to-text and text-to-image generation in a single framework. During training, ITIT leverages a small set of paired image-text data to ensure its output matches the input reasonably well in both directions. Simultaneously, the model is also trained on much larger datasets containing only images or texts. This is achieved by enforcing cycle consistency between the original unpaired samples and the cycle-generated counterparts. For instance, it generates a caption for a given input image and then uses the caption to create an output image, and enforces similarity between the input and output images. Our experiments show that ITIT with unpaired datasets exhibits similar scaling behavior as using high-quality paired data. We demonstrate image generation and captioning performance on par with state-of-the-art text-to-image and image-to-text models with orders of magnitude fewer (only 3M) paired image-text data.

cs.CV↗

arXiv2023

Substance or Style: What Does Your Image Embedding Know?

Probes are small networks that predict properties of underlying data from embeddings, and they provide a targeted, effective way to illuminate the information contained in embeddings. While analysis through the use of probes has become standard in NLP, there has been much less exploration in vision. Image foundation models have primarily been evaluated for semantic content. Better understanding the non-semantic information in popular embeddings (e.g., MAE, SimCLR, or CLIP) will shed new light both on the training algorithms and on the uses for these foundation models. We design a systematic transformation prediction task and measure the visual content of embeddings along many axes, including image style, quality, and a range of natural and artificial transformations. Surprisingly, six embeddings (including SimCLR) encode enough non-semantic information to identify dozens of transformations. We also consider a generalization task, where we group similar transformations and hold out several for testing. We find that image-text models (CLIP and ALIGN) are better at recognizing new examples of style transfer than masking-based models (CAN and MAE). Overall, our results suggest that the choice of pre-training algorithm impacts the types of information in the embedding, and certain models are better than others for non-semantic downstream tasks.

cs.LG↗

arXiv2023

StyleDrop: Text-to-Image Generation in Any Style

Pre-trained large text-to-image models synthesize impressive images with an appropriate use of text prompts. However, ambiguities inherent in natural language and out-of-distribution effects make it hard to synthesize image styles, that leverage a specific design pattern, texture or material. In this paper, we introduce StyleDrop, a method that enables the synthesis of images that faithfully follow a specific style using a text-to-image model. The proposed method is extremely versatile and captures nuances and details of a user-provided style, such as color schemes, shading, design patterns, and local and global effects. It efficiently learns a new style by fine-tuning very few trainable parameters (less than $1\%$ of total model parameters) and improving the quality via iterative training with either human or automated feedback. Better yet, StyleDrop is able to deliver impressive results even when the user supplies only a single image that specifies the desired style. An extensive study shows that, for the task of style tuning text-to-image models, StyleDrop implemented on Muse convincingly outperforms other methods, including DreamBooth and textual inversion on Imagen or Stable Diffusion. More results are available at our project website: https://styledrop.github.io

cs.CV↗

arXiv2023

StableRep: Synthetic Images from Text-to-Image Models Make Strong Visual Representation Learners

We investigate the potential of learning visual representations using synthetic images generated by text-to-image models. This is a natural question in the light of the excellent performance of such models in generating high-quality images. We consider specifically the Stable Diffusion, one of the leading open source text-to-image models. We show that (1) when the generative model is configured with proper classifier-free guidance scale, training self-supervised methods on synthetic images can match or beat the real image counterpart; (2) by treating the multiple images generated from the same text prompt as positives for each other, we develop a multi-positive contrastive learning method, which we call StableRep. With solely synthetic images, the representations learned by StableRep surpass the performance of representations learned by SimCLR and CLIP using the same set of text prompts and corresponding real images, on large scale datasets. When we further add language supervision, StableRep trained with 20M synthetic images achieves better accuracy than CLIP trained with 50M real images.

cs.CV↗

arXiv2023

Improving CLIP Training with Language Rewrites

Contrastive Language-Image Pre-training (CLIP) stands as one of the most effective and scalable methods for training transferable vision models using paired image and text data. CLIP models are trained using contrastive loss, which typically relies on data augmentations to prevent overfitting and shortcuts. However, in the CLIP training paradigm, data augmentations are exclusively applied to image inputs, while language inputs remain unchanged throughout the entire training process, limiting the exposure of diverse texts to the same image. In this paper, we introduce Language augmented CLIP (LaCLIP), a simple yet highly effective approach to enhance CLIP training through language rewrites. Leveraging the in-context learning capability of large language models, we rewrite the text descriptions associated with each image. These rewritten texts exhibit diversity in sentence structure and vocabulary while preserving the original key concepts and meanings. During training, LaCLIP randomly selects either the original texts or the rewritten versions as text augmentations for each image. Extensive experiments on CC3M, CC12M, RedCaps and LAION-400M datasets show that CLIP pre-training with language rewrites significantly improves the transfer performance without computation or memory overhead during training. Specifically for ImageNet zero-shot accuracy, LaCLIP outperforms CLIP by 8.2% on CC12M and 2.4% on LAION-400M. Code is available at https://github.com/LijieFan/LaCLIP.

cs.CV↗

arXiv2023

Steerable Equivariant Representation Learning

Pre-trained deep image representations are useful for post-training tasks such as classification through transfer learning, image retrieval, and object detection. Data augmentations are a crucial aspect of pre-training robust representations in both supervised and self-supervised settings. Data augmentations explicitly or implicitly promote invariance in the embedding space to the input image transformations. This invariance reduces generalization to those downstream tasks which rely on sensitivity to these particular data augmentations. In this paper, we propose a method of learning representations that are instead equivariant to data augmentations. We achieve this equivariance through the use of steerable representations. Our representations can be manipulated directly in embedding space via learned linear maps. We demonstrate that our resulting steerable and equivariant representations lead to better performance on transfer learning and robustness: e.g. we improve linear probe top-1 accuracy by between 1% to 3% for transfer; and ImageNet-C accuracy by upto 3.4%. We further show that the steerability of our representations provides significant speedup (nearly 50x) for test-time augmentations; by applying a large number of augmentations for out-of-distribution detection, we significantly improve OOD AUC on the ImageNet-C dataset over an invariant representation.

cs.CV↗

arXiv2023

Muse: Text-To-Image Generation via Masked Generative Transformers

We present Muse, a text-to-image Transformer model that achieves state-of-the-art image generation performance while being significantly more efficient than diffusion or autoregressive models. Muse is trained on a masked modeling task in discrete token space: given the text embedding extracted from a pre-trained large language model (LLM), Muse is trained to predict randomly masked image tokens. Compared to pixel-space diffusion models, such as Imagen and DALL-E 2, Muse is significantly more efficient due to the use of discrete tokens and requiring fewer sampling iterations; compared to autoregressive models, such as Parti, Muse is more efficient due to the use of parallel decoding. The use of a pre-trained LLM enables fine-grained language understanding, translating to high-fidelity image generation and the understanding of visual concepts such as objects, their spatial relationships, pose, cardinality etc. Our 900M parameter model achieves a new SOTA on CC3M, with an FID score of 6.06. The Muse 3B parameter model achieves an FID of 7.88 on zero-shot COCO evaluation, along with a CLIP score of 0.32. Muse also directly enables a number of image editing applications without the need to fine-tune or invert the model: inpainting, outpainting, and mask-free editing. More results are available at https://muse-model.github.io

cs.CV↗

arXiv2022

MAGE: MAsked Generative Encoder to Unify Representation Learning and Image Synthesis

Generative modeling and representation learning are two key tasks in computer vision. However, these models are typically trained independently, which ignores the potential for each task to help the other, and leads to training and model maintenance overheads. In this work, we propose MAsked Generative Encoder (MAGE), the first framework to unify SOTA image generation and self-supervised representation learning. Our key insight is that using variable masking ratios in masked image modeling pre-training can allow generative training (very high masking ratio) and representation learning (lower masking ratio) under the same training framework. Inspired by previous generative models, MAGE uses semantic tokens learned by a vector-quantized GAN at inputs and outputs, combining this with masking. We can further improve the representation by adding a contrastive loss to the encoder output. We extensively evaluate the generation and representation learning capabilities of MAGE. On ImageNet-1K, a single MAGE ViT-L model obtains 9.10 FID in the task of class-unconditional image generation and 78.9% top-1 accuracy for linear probing, achieving state-of-the-art performance in both image generation and representation learning. Code is available at https://github.com/LTH14/mage.

cs.CV↗

arXiv2022

A simple, efficient and scalable contrastive masked autoencoder for learning visual representations

We introduce CAN, a simple, efficient and scalable method for self-supervised learning of visual representations. Our framework is a minimal and conceptually clean synthesis of (C) contrastive learning, (A) masked autoencoders, and (N) the noise prediction approach used in diffusion models. The learning mechanisms are complementary to one another: contrastive learning shapes the embedding space across a batch of image samples; masked autoencoders focus on reconstruction of the low-frequency spatial correlations in a single image sample; and noise prediction encourages the reconstruction of the high-frequency components of an image. The combined approach results in a robust, scalable and simple-to-implement algorithm. The training process is symmetric, with 50% of patches in both views being masked at random, yielding a considerable efficiency improvement over prior contrastive learning methods. Extensive empirical studies demonstrate that CAN achieves strong downstream performance under both linear and finetuning evaluations on transfer learning and robustness tasks. CAN outperforms MAE and SimCLR when pre-training on ImageNet, but is especially useful for pre-training on larger uncurated datasets such as JFT-300M: for linear probe on ImageNet, CAN achieves 75.4% compared to 73.4% for SimCLR and 64.1% for MAE. The finetuned performance on ImageNet of our ViT-L model is 86.1%, compared to 85.5% for SimCLR, and 85.4% for MAE. The overall FLOPs load of SimCLR is 70% higher than CAN for ViT-L models.

cs.CV↗

arXiv2022

Contrastive Representation Distillation

Often we wish to transfer representational knowledge from one neural network to another. Examples include distilling a large network into a smaller one, transferring knowledge from one sensory modality to a second, or ensembling a collection of models into a single estimator. Knowledge distillation, the standard approach to these problems, minimizes the KL divergence between the probabilistic outputs of a teacher and student network. We demonstrate that this objective ignores important structural knowledge of the teacher network. This motivates an alternative objective by which we train a student to capture significantly more information in the teacher's representation of the data. We formulate this objective as contrastive learning. Experiments demonstrate that our resulting new objective outperforms knowledge distillation and other cutting-edge distillers on a variety of knowledge transfer tasks, including single model compression, ensemble distillation, and cross-modal transfer. Our method sets a new state-of-the-art in many transfer tasks, and sometimes even outperforms the teacher network when combined with knowledge distillation. Code: http://github.com/HobbitLong/RepDistiller.

cs.LG↗

arXiv2021

Object-Aware Cropping for Self-Supervised Learning

A core component of the recent success of self-supervised learning is cropping data augmentation, which selects sub-regions of an image to be used as positive views in the self-supervised loss. The underlying assumption is that randomly cropped and resized regions of a given image share information about the objects of interest, which the learned representation will capture. This assumption is mostly satisfied in datasets such as ImageNet where there is a large, centered object, which is highly likely to be present in random crops of the full image. However, in other datasets such as OpenImages or COCO, which are more representative of real world uncurated data, there are typically multiple small objects in an image. In this work, we show that self-supervised learning based on the usual random cropping performs poorly on such datasets. We propose replacing one or both of the random crops with crops obtained from an object proposal algorithm. This encourages the model to learn both object and scene level semantic representations. Using this approach, which we call object-aware cropping, results in significant improvements over scene cropping on classification and object detection benchmarks. For example, on OpenImages, our approach achieves an improvement of 8.8% mAP over random scene-level cropping using MoCo-v2 based pre-training. We also show significant improvements on COCO and PASCAL-VOC object detection and segmentation tasks over the state-of-the-art self-supervised learning approaches. Our approach is efficient, simple and general, and can be used in most existing contrastive and non-contrastive self-supervised learning frameworks.

cs.CV↗

arXiv2021

Pyramid Adversarial Training Improves ViT Performance

Aggressive data augmentation is a key component of the strong generalization capabilities of Vision Transformer (ViT). One such data augmentation technique is adversarial training (AT); however, many prior works have shown that this often results in poor clean accuracy. In this work, we present pyramid adversarial training (PyramidAT), a simple and effective technique to improve ViT's overall performance. We pair it with a "matched" Dropout and stochastic depth regularization, which adopts the same Dropout and stochastic depth configuration for the clean and adversarial samples. Similar to the improvements on CNNs by AdvProp (not directly applicable to ViT), our pyramid adversarial training breaks the trade-off between in-distribution accuracy and out-of-distribution robustness for ViT and related architectures. It leads to 1.82% absolute improvement on ImageNet clean accuracy for the ViT-B model when trained only on ImageNet-1K data, while simultaneously boosting performance on 7 ImageNet robustness metrics, by absolute numbers ranging from 1.76% to 15.68%. We set a new state-of-the-art for ImageNet-C (41.42 mCE), ImageNet-R (53.92%), and ImageNet-Sketch (41.04%) without extra data, using only the ViT-B/16 backbone and our pyramid adversarial training. Our code is publicly available at pyramidat.github.io.

cs.CV↗

arXiv2021

CSI: Contrastive Data Stratification for Interaction Prediction and its Application to Compound-Protein Interaction Prediction

Accurately predicting the likelihood of interaction between two objects (compound-protein sequence, user-item, author-paper, etc.) is a fundamental problem in Computer Science. Current deep-learning models rely on learning accurate representations of the interacting objects. Importantly, relationships between the interacting objects, or features of the interaction, offer an opportunity to partition the data to create multi-views of the interacting objects. The resulting congruent and non-congruent views can then be exploited via contrastive learning techniques to learn enhanced representations of the objects.

cs.LG↗