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Dmitry O. Sinitsyn

Publications and source records attributed to Dmitry O. Sinitsyn.

4 recordsLinked to original sources

Symmetry of Spin Systems as Automorphisms of Undirected Weighted Graphs: Realizability Criterion and Complete Taxonomy up to 14 Spins

Exact simulation of high-resolution NMR spectra requires block diagonalization of the spin Hamiltonian, whose dimension grows exponentially with the number of spins $N$; symmetry is the principal tool for taming this growth, yet which permutation groups can occur as the full symmetry group of a scalar-coupled spin system has lacked an exhaustive treatment. Formulating the spin system as an undirected edge-weighted complete graph, we prove an exact realizability criterion: a subgroup of $S_N$ is realizable if and only if it coincides with its symmetrized (undirected) Wielandt 2-closure. In particular, purely rotational symmetry of a single spin ring is impossible, yet chiral spin systems do exist as multi-orbit twisted stacks, and we determine the minimal spin count $μ^{*}(C_n)$ for every cyclic group, including the counter-intuitive realizations $C_8$ and $C_9$ at $N = 12$. A sequential symmetrization algorithm, completed by an orbit-partition decomposition, yields a provably exhaustive enumeration of all realizable symmetry types up to $N = 14$: the apparently new sequence $a(N) = 1, 1, 3, 8, 11, 27, 36, 90, 131, 282, 394, 948, 1316, 2866$ with the tower law $a(N) = a(N-1) + f(N)$ - a catalogue of 6112 entries in all, organized by canonical identifiers and a structural grammar extending the Pople nomenclature. Finally, we present a hierarchical methodology for exact block diagonalization without physical approximations: factorization by the conserved total spin projection, Schur-Weyl contraction of magnetically equivalent composites, orbit-weight deduplication of the spin configurations, and isotypic projection over the representations of the factor group, with a uniform treatment of non-abelian groups and complex characters.

physics.chem-ph

On the Connection of High-Resolution NMR Spectrum Mirror Symmetry With Spin System Properties

A correlation between the symmetry of NMR spectra, including higher-order spectra, and the properties of the spin system has been established. It is shown that for a spectrum to be symmetric about the mid-resonance frequency (ν0), two conditions must be satisfied: the resonant frequencies of the spins must be symmetrically positioned about ν0, and the J coupling matrix must be symmetric about the secondary diagonal. The results were validated by calculating theoretical spectra for 4-, 5-, and 6-spin systems.

physics.chem-ph

Mirror Symmetry of the NMR Spectrum and the Connection with the Structure of Spin Hamiltonian Matrix Representations

This work provides a comprehensive theoretical framework for understanding the symmetry properties of High-Resolution NMR spectra. We analyze the conditions under which a spectrum exhibits mirror symmetry (palindromicity). We demonstrate that such symmetry can arise from two distinct mechanisms: (1) the direct geometric bisymmetry of the Hamiltonian matrix in a generalized canonical basis (typical for balanced systems like $A_nB_n$ or $A_nX_n$), and (2) a more fundamental property of topological isospectrality (similarity) under parameter exchange induced by the internal symmetry of the spin system, which applies even when the matrix lacks geometric symmetry (as observed in $AA'BB'$ systems).

physics.chem-ph

In vivo crystallization of bacterial nucleoid under stress. Possibilities of study at X-ray free electron lasers

Under prolonged starvation, the nucleoid of E. coli bacteria forms nanocrystalline complexes with the protein Dps. By one hypothesis, this effect is considered to be a manifestation of a general strategy of self-preservation of living organisms under adverse conditions by forming stable ordered structures which do not require consumption of energy for maintaining the order. The effect of nucleoid biocrystallization in starved bacteria has been investigated in a number of studies using electron microscopy. However, this method did not answer all questions regarding the structure of the nanocrystals, and, primarily, the question of the true conformation of DNA in these complexes. This issue is particularly important because it is related to a more general, actively researched topic of organization of the genetic material, which affects gene expression and is thus critical for the functioning of organisms. The intracellular DNA-Dps nanocrystals have the size in the range of hundreds of nanometers and are thus particularly suitable for study at X-ray free electron lasers (XFELs). In this paper, we discuss the possible configurations of XFEL experiments aimed at determining the conformation of DNA in the DNA-Dps nanocrystals grown in vivo and in vitro, as well as the specific features and challenges associated with this type of sample. We conclude that the XFEL technique has a high potential for uncovering the structural details of bacterial nucleoid restructuring under stress.

cond-mat.soft