arXiv subjects

Dominik Gond

Publications and source records attributed to Dominik Gond.

4 recordsLinked to original sources

arXiv2025

CHAOS -- A Consistent Large-scale Database for Sigma-Profiles and Other Molecular Descriptors

Sigma-profiles obtained from quantum-chemical calculations are key molecular descriptors for solvent selection, thermodynamic modeling, and data-driven molecular design. However, existing sigma-profile libraries are limited in size and inconsistent in quality, which restricts their utility. In this work, we introduce CHAOS (Computed High-Accuracy Observables and Sigma Profiles), a large-scale and internally consistent database providing sigma-profiles for 53091 molecules, along with additional quantum-chemical observables including gas-phase geometries, single-point conductor-like polarizable continuum (C-PCM) data, infrared spectra, ideal-gas heat capacities and entropies, and atomic orbital nuclear magnetic resonance (NMR) shielding tensors. All data were generated using a standardized quantum-chemical workflow based on an wB97X-D/def2-TZVP level of theory. The CHAOS database covers molecules composed of a diverse set of elements, with molecular masses up to 400 amu and dipole moments up to 15 D, and is freely available on Zenodo under an open license. It extends the number of molecules for which sigma-profiles are publicly available by more than an order of magnitude and systematically links them to a broad range of other quantum-chemical molecular descriptors. CHAOS provides a comprehensive and consistent foundation for developing models of molecular and thermodynamic properties -- both physics-based and machine-learning approaches -- across chemistry, chemical engineering, and materials science, greatly extending the possibilities and the available quantum-chemical data basis.

physics.chem-ph↗

arXiv2024

Prediction of Activity Coefficients by Similarity-Based Imputation using Quantum-Chemical Descriptors

In this work, we introduce a novel approach for predicting thermodynamic properties of binary mixtures, which we call the similarity-based method (SBM). The method is based on quantifying the pairwise similarity of components, which we achieve by comparing quantum-chemical descriptors of the components, namely $\sigma$-profiles. The basic idea behind the approach is that mixtures with similar pairs of components will have similar thermodynamic properties. The SBM is trained on a matrix that contains some data for a given property for different binary mixtures; the missing entries are then predicted by the SBM. As an example, we consider the prediction of isothermal activity coefficients at infinite dilution ($\gamma^\infty_{ij}$) and show that the SBM outperforms the well-established physical methods modified UNIFAC (Dortmund) and COSMO-SAC-dsp. In this case, the matrix is only sparsely occupied, and it is shown that the SBM works also if only a limited number of data for similar mixtures is available. The SBM idea can be transferred to any mixture property and is a powerful tool for generating essential data for many applications.

physics.chem-ph↗

arXiv2024

Hierarchical Matrix Completion for the Prediction of Properties of Binary Mixtures

Predicting the thermodynamic properties of mixtures is crucial for process design and optimization in chemical engineering. Machine learning (ML) methods are gaining increasing attention in this field, but experimental data for training are often scarce, which hampers their application. In this work, we introduce a novel generic approach for improving data-driven models: inspired by the ancient rule "similia similibus solvuntur", we lump components that behave similarly into chemical classes and model them jointly in the first step of a hierarchical approach. While the information on class affiliations can stem in principle from any source, we demonstrate how classes can reproducibly be defined based on mixture data alone by agglomerative clustering. The information from this clustering step is then used as an informed prior for fitting the individual data. We demonstrate the benefits of this approach by applying it in connection with a matrix completion method (MCM) for predicting isothermal activity coefficients at infinite dilution in binary mixtures. Using clustering leads to significantly improved predictions compared to an MCM without clustering. Furthermore, the chemical classes learned from the clustering give exciting insights into what matters on the molecular level for modeling given mixture properties.

cs.LG↗

arXiv2024

Balancing Molecular Information and Empirical Data in the Prediction of Physico-Chemical Properties

Predicting the physico-chemical properties of pure substances and mixtures is a central task in thermodynamics. Established prediction methods range from fully physics-based ab-initio calculations, which are only feasible for very simple systems, over descriptor-based methods that use some information on the molecules to be modeled together with fitted model parameters (e.g., quantitative-structure-property relationship methods or classical group contribution methods), to representation-learning methods, which may, in extreme cases, completely ignore molecular descriptors and extrapolate only from existing data on the property to be modeled (e.g., matrix completion methods). In this work, we propose a general method for combining molecular descriptors with representation learning using the so-called expectation maximization algorithm from the probabilistic machine learning literature, which uses uncertainty estimates to trade off between the two approaches. The proposed hybrid model exploits chemical structure information using graph neural networks, but it automatically detects cases where structure-based predictions are unreliable, in which case it corrects them by representation-learning based predictions that can better specialize to unusual cases. The effectiveness of the proposed method is demonstrated using the prediction of activity coefficients in binary mixtures as an example. The results are compelling, as the method significantly improves predictive accuracy over the current state of the art, showcasing its potential to advance the prediction of physico-chemical properties in general.

cs.LG↗