arXiv subjects

Dominik Marx

Publications and source records attributed to Dominik Marx.

26 records · Page 2Linked to original sources

arXiv2019

Quantum Nature of the Hydrogen Bond from Ambient Conditions down to Ultra-low Temperatures

Many experimental techniques such as tagging photodissociation and helium nanodroplet isolation spectroscopy operate at very low temperatures in order to investigate hydrogen bonding. To elucidate the differences between such ultra-cold and usual ambient conditions, different hydrogen bonded systems are studied systematically from 300 K down to about 1 K using path integral simulations that explicitly consider both, the quantum nature of the nuclei and thermal fluctuations. For that purpose, finite sized water clusters, specifically the water dimer and hexamer, protonated water clusters including the Zundel and Eigen complexes, as well as hexagonal ice as a condensed phase representative are compared directly as a function of temperature. While weaker hydrogen bonds, as present in the neutral systems, show distinct structural differences between ambient conditions and the ultra-cold regime, the stronger hydrogen bonds of the protonated water clusters are less perturbed by temperature compared to their quantum ground state. In all studied systems, the quantum delocalization of the nuclei is found to vary drastically with temperature. Interestingly, upon reaching temperatures of about 1 K, the spatial quantum delocalization of the heavy oxygens approaches that of the protons for relatively weak spatial constraints, and even significantly exceeds the latter in case of the centered hydrogen bond in the Zundel complex. These findings are relevant for comparisons between experiments on hydrogen bonding carried out at ultra-cold versus ambient conditions as well as to understand quantum delocalization phenomena of nuclei by seamlessly extending our insights into noncovalent interactions down to ultra-low temperatures.

physics.chem-ph↗

arXiv2013

On the Impact of Solvation on a Au/TiO2 Nanocatalyst in Contact with Water

Water, the ubiquitous solvent, is also prominent in forming liquid solid interfaces with catalytically active surfaces, in particular with promoted oxides. We study the complex interface of a gold nanocatalyst, pinned by an F center on titania support, and water. The ab initio simulations uncover the microscopic details of solvent-induced charge rearrangements at the metal particle. Water is found to stabilize charge states differently from the gas phase as a result of structure specific charge transfer from to the solvent, thus altering surface reactivity. The metal cluster is shown to feature both cationic and anionic solvation, depending on fluctuation and polarization effects in the liquid, which creates novel active sites. These observations open up an avenue toward solvent engineering in liquid-phase heterogeneous catalysis.

cond-mat.mtrl-sci↗

arXiv2011

Ideal, Defective, and Gold--Promoted Rutile TiO2(110) Surfaces: Structures, Energies, Dynamics, and Thermodynamics from PBE+U

Extensive first principles calculations are carried out to investigate gold-promoted TiO2(110) surfaces in terms of structure optimizations, electronic structure analyses, ab initio thermodynamics calculations of surface phase diagrams, and ab initio molecular dynamics simulations. All computations rely on density functional theory in the generalized gradient approximation (PBE) and account for on-site Coulomb interactions via inclusion of a Hubbard correction, PBE+U, where U is computed from linear response theory. This approach is validated by investigating the interaction between TiO2(110) surfaces and typical probe species (H, H2O, CO). Relaxed structures and binding energies are compared to both data from the literature and plain PBE results. The main focus of the study is on the properties of gold-promoted titania surfaces and their interactions with CO. Both PBE+U and PBE optimized structures of Au adatoms adsorbed on stoichiometric and reduced TiO2 surfaces are computed, along with their electronic structure. The charge rearrangement induced by the adsorbates at the metal/oxide contact are also analyzed and discussed. By performing PBE+U ab initio molecular dynamics simulations, it is demonstrated that the diffusion of Au adatoms on the stoichiometric surface is highly anisotropic. The metal atoms migrate either along the top of the bridging oxygen rows, or around the area between these rows, from one bridging position to the next along the [001] direction. Approximate ab initio thermodynamics predicts that under O-rich conditions, structures obtained by substituting a Ti5c atom with an Au atom are thermodynamically stable over a wide range of temperatures and pressures.

cond-mat.mtrl-sci↗

arXiv2010

Charge Localization Dynamics induced by Oxygen Vacancies on the Titania TiO$_2$(110) Surface

The dynamics of an F--center created by an oxygen vacancy on the $\mathrm{TiO_{2}(110)}$ rutile surface has been investigated using {\it ab initio} molecular dynamics. These simulations uncover a truly complex, time-dependent behavior of fluctuating electron localization topologies in the vicinity of the oxygen vacancy. Although the two excess electrons are found to populate preferentially the second subsurface layer, they occasionally visit surface sites and also the third subsurface layer. This dynamical behavior of the excess charge explains hitherto conflicting interpretations of both theoretical findings and experimental data.

cond-mat.mtrl-sci↗

arXiv2009

Composition, structure, and stability of the rutile TiO_2(110) surface: oxygen depletion, hydroxylation, hydrogen migration and water adsorption

A comprehensive phase diagram of lowest-energy structures and compositions of the rutile TiO_2(110) surface in equilibrium with a surrounding gas phase at finite temperatures and pressures has been determined using density functional theory in combination with a thermodynamic formalism. The exchange of oxygen, hydrogen, and water molecules with the gas phase is considered. Particular attention is given to the convergence of all calculations with respect to lateral system size and slab thickness. In addition, the reliability of semilocal density functionals to describing the energetics of the reduced surfaces is critically evaluated. For ambient conditions the surface is found to be fully covered by molecularly adsorbed water. At low coverages, in the limit of single, isolated water molecules, molecular and dissociative adsorption become energetically degenerate. Oxygen vacancies form in strongly reducing, oxygen-poor environments. However, already at slightly more moderate conditions it is shown that removing full TiO_2 units from the surface is thermodynamically preferred. In agreement with recent experimental observations it is furthermore confirmed that even under extremely hydrogen-rich environments the surface cannot be fully hydroxylated, but only a maximum coverage with hydrogen of about 0.6-0.7 monolayer can be reached. Finally, calculations of migration paths strongly suggest that hydrogen prefers to diffuse into the bulk over desorbing from the surface into the gas phase.

cond-mat.mtrl-sci↗

arXiv2004

Temperature Dependent Conformational Transitions and Hydrogen Bond Dynamics of the Elastin-Like Octapeptide GVG(VPGVG): a Molecular Dynamics Study

A joint experimental / theoretical investigation of the elastin-like octapeptide GVG(VPGVG) was carried out. In this paper a comprehensive molecular dynamics study of the temperature dependent folding and unfolding of the octapeptide is presented. The current study, as well as its experimental counterpart find that this peptide undergoes an "inverse temperature transition", ITT, leading to a folding at about 310-330 K. In addition, an unfolding transition is identified at unusually high temperatures approaching the boiling point of water. Due to the small size of the system two broad temperature regimes are found: the "ITT regime" (at about 280-320 K) and the "unfolding regime" at about T > 330 K, where the peptide has a maximum probability of being folded at approximately 330 K. A detailed molecular picture involving a thermodynamic order parameter, or reaction coordinate, for this process is presented along with a time-correlation function analysis of the hydrogen bond dynamics within the peptide as well as between the peptide and solvating water molecules. Correlation with experimental evidence and ramifications on the properties of elastin are discussed.

q-bio.BM↗

arXiv2003

From ab initio quantum chemistry to molecular dynamics: The delicate case of hydrogen bonding in ammonia

The ammonia dimer (NH3)2 has been investigated using high--level ab initio quantum chemistry methods and density functional theory (DFT). The structure and energetics of important isomers is obtained to unprecedented accuracy without resorting to experiment. The global minimum of eclipsed C_s symmetry is characterized by a significantly bent hydrogen bond which deviates from linearity by about 20 degrees. In addition, the so-called cyclic C_{2h} structure is extremely close in energy on an overall flat potential energy surface. It is demonstrated that none of the currently available (GGA, meta--GGA, and hybrid) density functionals satisfactorily describe the structure and relative energies of this nonlinear hydrogen bond. We present a novel density functional, HCTH/407+, designed to describe this sort of hydrogen bond quantitatively on the level of the dimer, contrary to e.g. the widely used BLYP functional. This improved functional is employed in Car-Parrinello ab initio molecular dynamics simulations of liquid ammonia to judge its performance in describing the associated liquid. Both the HCTH/407+ and BLYP functionals describe the properties of the liquid well as judged by analysis of radial distribution functions, hydrogen bonding structure and dynamics, translational diffusion, and orientational relaxation processes. It is demonstrated that the solvation shell of the ammonia molecule in the liquid phase is dominated by steric packing effects and not so much by directional hydrogen bonding interactions. In addition, the propensity of ammonia molecules to form bifurcated and multifurcated hydrogen bonds in the liquid phase is found to be negligibly small.

physics.chem-ph↗

arXiv2002

Density-functional study of the structure and stability of ZnO surfaces

An extensive theoretical investigation of the nonpolar (10$\bar{1}$0) and (11$\bar{2}$0) surfaces as well as the polar zinc terminated (0001)--Zn and oxygen terminated (000$\bar{1}$)--O surfaces of ZnO is presented. Particular attention is given to the convergence properties of various parameters such as basis set, k--point mesh, slab thickness, or relaxation constraints within LDA and PBE pseudopotential calculations using both plane wave and mixed basis sets. The pros and cons of different approaches to deal with the stability problem of the polar surfaces are discussed. Reliable results for the structural relaxations and the energetics of these surfaces are presented and compared to previous theoretical and experimental data, which are also concisely reviewed and commented.

cond-mat.mtrl-sci↗