arXiv subjects

Dongrak Choi

Publications and source records attributed to Dongrak Choi.

4 recordsLinked to original sources

arXiv2026

Bayesian Nonparametric Causal Inference for Quantile Residual Life: An Application to Alzheimer's Disease

In Alzheimer's disease research, a clinically important question is how much longer individuals would remain dementia-free beyond a given time under different baseline amyloid statuses. We address this question using observational data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) treating baseline amyloid status as the exposure. Estimation is challenging because amyloid status is confounded, time to dementia onset is heterogeneous and heavily right censored, and the target population depends on joint potential event times. At each time point, we consider the always-survivor principal stratum comprising individuals who would remain dementia-free under both amyloid status and estimate quantile contrasts in residual time to dementia onset. We model the joint distribution of event time, exposure, and baseline covariates using an enriched Dirichlet process mixture and conduct posterior inference via Bayesian g-computation. The framework accommodates partially observed covariates under a within-subcluster missing-at-random assumption, estimates contrasts across multiple time points and quantiles from one posterior fit and supports sensitivity analyses for unmeasured confounding, cross-world dependence, and informative censoring. Simulations show favorable finite-sample performance under heterogeneity and heavy censoring. In ADNI, residual time to dementia onset was shorter under elevated than non-elevated baseline amyloid status, both overall and within baseline subgroups.

stat.AP↗

arXiv2026

Diagnostics for Semiparametric Accelerated Failure Time Models with R Package afttest

The semiparametric accelerated failure time (AFT) model offers a direct and interpretable alternative to the Cox proportional hazards model, yet practical diagnostic tools for this framework remain limited. We introduce afttest, an R package that implements martingale-residual-based goodness-of-fit procedures for semiparametric AFT models. In addition to the recently developed multiplier bootstrap diagnostics, the package introduces a new computationally efficient resampling strategy based on an influence-function linear approximation. Unlike the original approach, which requires repeatedly solving estimating equations for each bootstrap replicate, the proposed method avoids iterative optimization and substantially reduces computation time while preserving asymptotic validity. Both the standard multiplier bootstrap and the accelerated linear approximation are implemented, allowing users to balance finite-sample performance and computational scalability. The package supports rank-based and least-squares estimators, provides omnibus, link function, and functional form tests, and includes graphical tools for visualizing residual processes. An application to the Mayo Clinic primary biliary cirrhosis study illustrates the workflow.

stat.CO↗

arXiv2026

A Causal Framework for Quantile Residual Lifetime

Estimating prognosis conditional on surviving an initial high-risk period is crucial in clinical research. Yet, standard metrics such as hazard ratios are often difficult to interpret, while mean-based summaries are sensitive to outliers and censoring. We propose a formal causal framework for estimating quantiles of residual lifetime among individuals surviving to a landmark time $t_0$. Our primary estimand, the "Observed Survivor Quantile Contrast" (OSQC), targets pragmatic prognostic differences within the observed survivor population. To estimate the OSQC, we develop a doubly robust estimator that combines propensity scores, outcome regression, and inverse probability of censoring weights, ensuring consistency under confounding and informative censoring provided that the censoring model is correctly specified and at least one additional nuisance model is correctly specified. Recognizing that the OSQC conflates causal efficacy and compositional selection, we also introduce a reweighting-based supplementary estimator for the "Principal Survivor Quantile Contrast" (PSQC) to disentangle these mechanisms under stronger assumptions. Extensive simulations demonstrate the robustness of the proposed estimators and clarify the role of post-treatment selection. We illustrate the framework using data from the SUPPORT study to assess the impact of right heart catheterization on residual lifetime among intensive care unit survivors, and from the NSABP B-14 trial to examine post-surgical prognosis under adjuvant tamoxifen therapy across multiple landmark times.

stat.ME↗

arXiv2023

A general model-checking procedure for semiparametric accelerated failure time models

We propose a set of goodness-of-fit tests for the semiparametric accelerated failure time (AFT) model, including an omnibus test, a link function test, and a functional form test. This set of tests is derived from a multi-parameter cumulative sum process shown to follow asymptotically a zero-mean Gaussian process. Its evaluation is based on the asymptotically equivalent perturbed version, which enables both graphical and numerical evaluations of the assumed AFT model. Empirical p-values are obtained using the Kolmogorov-type supremum test, which provides a reliable approach for estimating the significance of both proposed un-standardized and standardized test statistics. The proposed procedure is illustrated using the induced smoothed rank-based estimator but is directly applicable to other popular estimators such as non-smooth rank-based estimator or least-squares estimator.Our proposed methods are rigorously evaluated using extensive simulation experiments that demonstrate their effectiveness in maintaining a Type I error rate and detecting departures from the assumed AFT model in practical sample sizes and censoring rates. Furthermore, the proposed approach is applied to the analysis of the Primary Biliary Cirrhosis data, a widely studied dataset in survival analysis, providing further evidence of the practical usefulness of the proposed methods in real-world scenarios. To make the proposed methods more accessible to researchers, we have implemented them in the R package afttest, which is publicly available on the Comprehensive R Archieve Network.

stat.ME↗