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Dooho Lee

Publications and source records attributed to Dooho Lee.

10 recordsLinked to original sources
arXiv2026

Distillation of Tabular Foundation Models into Efficient Predictors

Tabular foundation models (TFMs) achieve strong predictive performance through in-context learning, yet repeatedly conditioning on labeled data makes inference expensive. Knowledge distillation can reduce this cost by transferring their predictive ability to lightweight, dataset-specific students. However, the dependence of TFM predictions on both a labeled context and a query introduces two design questions: how to construct teacher supervision and whether expanding query coverage improves distillation. We examine these questions across two TFMs and both neural and tree-based students, and derive an effective distillation recipe. The recipe uses the full labeled training set as teacher context and trains students solely on teacher predictions for observed and synthetic queries. On TabArena, the resulting students outperform their supervised trained tuned-and-ensembled counterparts by 57-98 Elo points. Applied unchanged to TALENT, the same recipe improves matched default students on 236-258 of 300 datasets and reduces median primary error by 4.0-6.4%. The distilled students also achieve median inference speedups of 3.0-21.6 times over their teachers, offering a practical trade-off between predictive performance and repeated inference cost. Code is available at https://github.com/nums-ai/TFM_Distillation .

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arXiv2026

Molecular Property Prediction under Structural Shift with Tabular Foundation Models

Predicting molecular properties for compounds that differ structurally from labeled training molecules is important for drug discovery and materials design. Tabular foundation models (TFMs) offer a promising approach through in-context learning, but their performance under structural shifts and the value of molecular comparisons in this setting remain underexplored. We study structural generalization in molecular property prediction and introduce MolPAIR (Molecular Pair-Augmented In-context Refinement), a framework that combines molecule-level and molecular-pair contexts without task-specific parameter updates. A global tabular foundation model (TFM) first predicts a query's property from labeled molecular examples. A second frozen TFM predicts differences in prediction errors between the query and labeled reference molecules, using these comparisons to refine the initial prediction. Across 58 MoleculeACE and Polaris tasks, CheMeleon representations combined with TabPFN-3 already outperform each evaluated baseline on a majority of tasks. MOLPAIR further improves this predictor on 46 of 58 tasks, with gains across four molecular representations and three TFM backbones. These results show that explicit molecular comparisons can strengthen tabular in-context learning for structural generalization while keeping the molecular encoder and pretrained model weights fixed. The code and datasets are available at https://github.com/nums-ai/MolPAIR.

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arXiv2026

NodeGround: A Node Classification Benchmark in the Graph Foundation Model Era

Can a pretrained graph model replace training and tuning a separate predictor for each dataset? Answering this requires evaluating prediction quality alongside computational cost. We present NodeGround, a node classification benchmark that puts graph foundation models (GFMs) and dataset-specific supervised learning under a common evaluation framework. The benchmark spans 51 datasets and evaluates six GFMs alongside 15 supervised methods under two label-availability regimes. Shared data partitions, validation-only model selection, controlled hyperparameter searches, and multiple predictive metrics make comparisons systematic, while workflow measurements account for adaptation, training, tuning, and inference. The results favor carefully tuned graph neural networks overall. GraphPFN reaches third place by Elo when more labels are available, yet its relative strengths vary substantially with dataset properties. Efficiency comparisons further qualify the benefits of pretrained reuse: GVT and GraphPFN appear on the Pareto frontiers when supervised methods are represented by their default and fully tuned configurations. Adding intermediate tuning budgets removes this advantage for GVT and leaves GraphPFN extending the estimated frontier in the label-rich setting alone. Thus, reusing pretrained parameters does not yet provide a broadly reliable route to either stronger predictions or cheaper workflows. We release the evaluation pipeline, run-level records, and an open leaderboard at https://github.com/nums-ai/nodeground.

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arXiv2026

TaskBridge: Bridging Unsupervised Tabular Anomaly Detection and In-Context Learning via Virtual Tasks

Unsupervised tabular anomaly detection (TAD) aims to identify anomalous rows in tabular data using normal training samples. While conventional methods rely on dataset-specific training and configuration search, recent tabular foundation models (TFMs) enable zero-shot anomaly detection on unseen datasets via in-context learning. Most TFM-based approaches, however, require anomaly-specific pretraining from scratch, making detection inherently dependent on synthetic TAD-specific priors and costly to update. Some approaches instead repurpose pretrained general-purpose TFMs for TAD to avoid this burden, but rely on computationally expensive formulations with restrictive anomaly inductive biases. In this work, we introduce TaskBridge, a new framework that efficiently repurposes pretrained general-purpose TFMs for unsupervised TAD by constructing virtual supervised tasks that directly recast anomaly detection as supervised in-context inference of TFMs. The resulting virtual tasks induce predictive structures under which normal queries and their target pairs receive high support, whereas anomalies tend to violate the induced structures and receive lower support, providing direct anomaly evidence. Across 790 real-world datasets, TaskBridge consistently outperforms 30 baselines, including state-of-the-art TFM-based approaches, without anomaly-specific TFM pretraining or dataset-specific model optimization.

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arXiv2026

Message Passing Does More with Less for In-Context Learning on Graphs

Achieving strong performance with graph neural networks (GNNs) typically requires training and hyperparameter tuning for each dataset, incurring repeated costs and effort. Graph in-context learning (ICL) avoids this by using a single pretrained model to predict unknown node labels directly from labeled context nodes. Existing approaches, however, rely on dense attention across nodes, making inference increasingly expensive as graphs grow. In this work, we present Ephris, a new graph in-context learner built on sparse message passing, scaling linearly with the number of node-feature entries and graph edges. Ephris is pretrained entirely on synthetic graphs generated from structural causal models with diverse graph structures and relational dynamics, exposing the model to varied dependencies among topology, features, and labels. We evaluate Ephris on 51 node-classification datasets against 15 extensively tuned GNNs and existing graph ICL methods under both high- and low-label train/validation/test splits. Across both settings, Ephris ranks first on all four aggregate measures: Elo, improvability, average rank, and accuracy. Its inference cost remains comparable to training a single GNN once, while being over 10 times faster than previous graph ICL models. Together, these results advance the performance-runtime Pareto frontier, demonstrating that strong graph ICL does not require dense attention. Code and model weights are available at https://github.com/nums-ai/ephris.

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arXiv2026

Causilo Technical Report

We introduce Causilo, a tabular foundation model (TFM) that combines frontier predictive performance with exceptionally fast inference. On TabArena, Causilo achieves 1785.4 Elo, at a median inference time of 0.10 seconds per 1K test samples. It outperforms TabPFN-3.5-Fast with 31.6% less inference time, placing it on the performance--efficiency Pareto frontier. Causilo follows TabICL's column-then-row architecture but introduces another row-refinement module before row compression. This module exchanges information among cell representations within each row after column encoding. The refined cells then visit the context set again through an additional column stage before being compressed into row embeddings. For inference efficiency, both row stages use cross-attention through a fixed number of summary tokens, keeping their attention cost linear in the number of features. Pretrained on approximately 36M synthetic tables, Causilo delivers strong benchmark results across TabArena, BeyondArena, and ScoringBench, achieving frontier-level performance with substantially faster inference.

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arXiv2026

Node4All: Learning Node Representation Beyond Datasets

Node representation learning has advanced rapidly, yet most existing methods rely on per-dataset training and hyperparameter tuning. This dataset-specific optimization comes from the difficulty of designing reusable graph models that generalize across diverse graph datasets. In this work, we introduce Node4All, a node representation learner applicable to arbitrary graph datasets without any dataset-specific optimization. Node4All is built on two complementary ideas. At the architectural level, we introduce the Channel Graph Transformer (CGT), which enables a single fixed parameterization to process arbitrary graph datasets. At the learning level, we propose a self-supervised learning based on a series of synthetic graphs. Together, these components enable generalization beyond individual datasets, which is infeasible with existing architectures and learning frameworks. We extensively evaluate Node4All on node classification across 25 benchmarks against 21 baselines, covering both supervised and self-supervised methods. Despite all baselines being trained and optimized for each dataset, a single Node4All, applied uniformly across the datasets, achieves a competitive ranking of 5th among 21 baselines. Moreover, Node4All supports one-shot and in-context learning with an appropriate predictor and outperforms recent graph foundation models (GFMs) in these settings. These results demonstrate that Node4All not only achieves reusability across arbitrary graph datasets, but also remains an effective solution in practice. Code and model checkpoints are available in https://github.com/dooho00/node4all.

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arXiv2026

Aggregation Buffer: Revisiting DropEdge with a New Parameter Block

We revisit DropEdge, a data augmentation technique for GNNs which randomly removes edges to expose diverse graph structures during training. While being a promising approach to effectively reduce overfitting on specific connections in the graph, we observe that its potential performance gain in supervised learning tasks is significantly limited. To understand why, we provide a theoretical analysis showing that the limited performance of DropEdge comes from the fundamental limitation that exists in many GNN architectures. Based on this analysis, we propose Aggregation Buffer, a parameter block specifically designed to improve the robustness of GNNs by addressing the limitation of DropEdge. Our method is compatible with any GNN model, and shows consistent performance improvements on multiple datasets. Moreover, our method effectively addresses well-known problems such as degree bias or structural disparity as a unifying solution. Code and datasets are available at https://github.com/dooho00/agg-buffer.

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arXiv2026

View Space: Learning Representation across Arbitrary Graphs

Generalizing pretrained models to unseen datasets without retraining is a central challenge toward foundation models. Achieving fully inductive inference on numerical data is particularly difficult due to large variations in feature dimensionality and semantics across datasets. We observe that, in the presence of graph structure, numerical data admits a distinct structure-induced representational axis beyond the feature space, which we formalize as the view space. This view space enables a unified representation of graphs with heterogeneous features and motivates Graph View Transformation (GVT), a class of parametric mappings that can be shared across arbitrary graphs. We instantiate this framework with Recurrent GVT, an architecture for fully inductive node representation learning in node classification. Pretrained on OGBN-Arxiv and evaluated on 27 benchmarks, Recurrent GVT outperforms GraphAny, the prior fully inductive graph model, by +8.93%, and surpasses 12 individually tuned GNNs by at least +3.30%. These results establish the view space as a principled and practical foundation for learning across graphs with heterogeneous feature spaces. Code and checkpoints are available in https://github.com/dooho00/graph-view-space.

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arXiv2026

Generalizing Multi-Scale Time-Series Modeling with a Single Operator

Multi-scale modeling has emerged as an effective design principle for time-series forecasting by capturing temporal dynamics at multiple resolutions. As no principled foundation has been established in the literature, we unify existing scaling methods into a scaling operator family, revealing a fundamental limitation of existing approaches: reliance on fixed and discrete scaling. To address this limitation, we propose SiGMA (Single Generalized Multi-scale Architecture), which enables distance-aware scaling via the learnable discrete Gaussian (LDG) kernel grounded in scale-space theory. We evaluate SiGMA comprehensively on long- and short-term forecasting benchmarks against state-of-the-art multi-scale baselines. SiGMA outperforms all competitors on both tasks, especially achieving the best performance in 13 out of 16 long-term evaluation settings. Beyond accuracy, SiGMA significantly improves training speed by up to 5.3 times and reduces memory consumption by up to 3.8 times over the strongest competitors. Code is available at https://github.com/cheonwoolee/SiGMA.

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