arXiv subjects

Douglas S. Galvao

Publications and source records attributed to Douglas S. Galvao.

106 records · Page 6Linked to original sources

arXiv2009

Structure and Dynamics of Boron Nitride Nanoscrolls

Carbon nanoscrolls (CNSs) are structures formed by rolling up graphene layers into a papyruslike shape. CNNs have been experimentally produced by different groups. Boron nitride nanoscrolls (BNNSs) are similar structures using boron nitride instead of graphene layers. In this work we report molecular mechanics and molecular dynamics results for the structural and dynamical aspects of BNNS formation. Similarly to CNS, BNNS formation is dominated by two major energy contributions, the increase in the elastic energy and the energetic gain due to van der Waals interactions of the overlapping surface of the rolled layers. The armchair scrolls are the most stable configuration while zigzag scrolls are metastable structures which can be thermally converted to armchair. Chiral scrolls are unstable and tend to evolve to zigzag or armchair configurations depending on their initial geometries. The possible experimental routes to produce BNNSs are also addressed.

cond-mat.mtrl-sci↗

arXiv2009

Rotational dynamics and polymerization of C$_{60}$ in C$_{60}$-cubane crystals: A molecular dynamics study

We report classical and tight-binding molecular dynamics simulations of the C$_{60}$ fullerene and cubane molecular crystal in order to investigate intermolecular dynamics and polymerization processes. Our results show that, for 200 K and 400 K, cubane molecules remain basically fixed, presenting only thermal vibrations, while C$_{60}$ fullerenes show rotational motions. Fullerenes perform "free" rotational motions at short times ($\lesssim$ 1 ps), small amplitude hindered rotational motions (librations) at intermediate times, and rotational diffusive dynamics at long times ($\gtrsim$ 10 ps). The mechanisms underlying these dynamics are presented. Random copolymerization among cubanes and fullerenes were observed when temperature is increased, leading to the formation of a disordered structure. Changes in the radial distribution function and electronic density of states indicate the coexistence of amorphous and crystalline phases. The different conformational phases that cubanes and fullerenes undergo during the copolymerization process are discussed.

cond-mat.mtrl-sci↗

arXiv2009

Modeling the Auxetic Transition for Carbon Nanotube Sheets

A simple model is developed to predict the complex mechanical properties of carbon nanotube sheets (buckypaper) [Hall \textit{et al.}, \textit{Science} \textbf{320} 504 (2008)]. Fabricated using a similar method to that deployed for making writing paper, these buckypapers can have in-plane Poisson's ratios changed from positive to negative, becoming auxetic, as multiwalled carbon nanotubes are increasingly mixed with single-walled carbon nanotubes. Essential structural features of the buckypapers are incorporated into the model: isotropic in-plane mechanical properties, nanotubes preferentially oriented in the sheet plane, and freedom to undergo stress-induced elongation by both angle and length changes. The expressions derived for the Poisson's ratios enabled quantitative prediction of both observed properties and remarkable new properties obtainable by structural modification.

cond-mat.mtrl-sci↗

arXiv2009

Defects in Graphene-Based Twisted Nanoribbons: Structural, Electronic and Optical Properties

We present some computational simulations of graphene-based nanoribbons with a number of half-twists varying from 0 to 4 and two types of defects obtained by removing a single carbon atom from two different sites. Optimized geometries are found by using a mix of classical-quantum semiempirical computations. According with the simulations results, the local curvature of the nanoribbons increases at the defect sites, specially for a higher number of half-twists. The HOMO-LUMO energy gap of the nanostructures has significant variation when the number of half-twists increases for the defective nanoribbons. At the quantum semiempirical level, the first optically active transitions and oscillator strengths are calculated using the full configuration interaction (CI) framework, and the optical absorption in the UV/Visible range (electronic transitions) and in the infrared (vibrational transitions) are achieved. Distinct nanoribbons show unique spectral signatures in the UV/Visible range, with the first absorption peaks in wavelengths ranging from the orange to the violet. Strong absorption is observed in the ultraviolet region, although differences in their infrared spectra are hardly discernible.

cond-mat.mtrl-sci↗

arXiv2009

Möbius and twisted graphene nanoribbons: stability, geometry and electronic properties

Results of classical force field geometry optimizations for twisted graphene nanoribbons with a number of twists $N_t$ varying from 0 to 7 (the case $N_t$=1 corresponds to a half-twist Möbius nanoribbon) are presented in this work. Their structural stability was investigated using the Brenner reactive force field. The best classical molecular geometries were used as input for semiempirical calculations, from which the electronic properties (energy levels, HOMO, LUMO orbitals) were computed for each structure. CI wavefunctions were also calculated in the complete active space framework taking into account eigenstates from HOMO-4 to LUMO+4, as well as the oscillator strengths corresponding to the first optical transitions in the UV-VIS range. The lowest energy molecules were found less symmetric than initial configurations, and the HOMO-LUMO energy gaps are larger than the value found for the nanographene used to build them due to electronic localization effects created by the twisting. A high number of twists leads to a sharp increase of the HOMO $\to$ LUMO transition energy. We suggest that some twisted nanoribbons could form crystals stabilized by dipolar interactions.

cond-mat.mtrl-sci↗

arXiv2009

Observation of the Smallest Metal Nanotube with Square-cross-section

Understanding the mechanical properties of nanoscale systems requires a range of measurement techniques and theoretical approaches to gather the relevant physical and chemical information. The arrangements of atoms in nanostructures and macroscopic matter can be different, principally due to the role of surface energy, but the interplay between atomic and electronic structure in association with applied mechanical stress can also lead to surprising differences. For example, metastable structures such as suspended chains of atoms and helical wires have been produced by the stretching of metal junctions. Here we report the spontaneous formation of the smallest possible metal nanotube with a square cross-section during the elongation of silver nanocontacts. Ab initio calculations and molecular simulations indicate that the hollow wire forms because this configuration allows the surface energy to be minimized, and also generates a soft structure capable of absorbing a huge tensile deformation.

cond-mat.mtrl-sci↗

arXiv2009

Graphene to Graphane: The Role of H Frustration in Lattice Contraction

Graphane is a two-dimensional system consisting of a single planar layer of fully saturated (sp$^3$ hybridization) carbon atoms with H atoms attached to them in an alternating pattern (up and down with relation to the plane defined by the carbon atoms). Stable graphane structures were theoretically predicted to exist some years ago and just experimentally realized through hydrogenation of graphene membranes. In this work we have investigated using \textit{ab initio} and reactive molecular dynamics the role of H frustration (breaking the H atoms up and down alternating pattern) in graphane-like structures. Our results show that H frustration significantly contributes to lattice contraction. The dynamical aspects of converting graphene to graphane is also addressed.

cond-mat.mtrl-sci↗

arXiv2007

Entanglement and the nonlinear elastic behavior of forests of coiled carbon nanotubes

Helical or coiled nanostructures have been object of intense experimental and theoretical studies due to their special electronic and mechanical properties. Recently, it was experimentally reported that the dynamical response of foamlike forest of coiled carbon nanotubes under mechanical impact exhibits a nonlinear, non-Hertzian behavior, with no trace of plastic deformation. The physical origin of this unusual behavior is not yet fully understood. In this work, based on analytical models, we show that the entanglement among neighboring coils in the superior part of the forest surface must be taken into account for a full description of the strongly nonlinear behavior of the impact response of a drop-ball onto a forest of coiled carbon nanotubes.

cond-mat.mtrl-sci↗

arXiv2007

Structure-Activity Relationship Investigation of Some New Tetracyclines by Electronic Index Methodology

Tetracyclines are an old class of molecules that constitute a broad-spectrum antibiotics. Since the first member of tetracycline family were isolated, the clinical importance of these compounds as therapeutic and prophylactic agents against a wide range of infections has stimulated efforts to define their mode of action as inhibitors of bacterial reproduction. We used three SAR methodologies for the analysis of biological activity of a set of 104 tetracycline compounds. Our calculation were carried out using the semi-empirical Austin Method One (AM1) and Parametric Method 3 (PM3). Electronic Indices Methodology (EIM), Principal Component Analysis (PCA) and Artificial Neural Networks (ANN) were applied to the classification of 14 old and 90 new proposed derivatives of tetracyclines. Our results make evident the importance of EIM descriptors in pattern recognition and also show that the EIM can be effectively used to predict the biological activity of Tetracyclines.

q-bio.BM↗

arXiv2007

Designing Conducting Polymers Using Bioinspired Ant Algorithms

Ant algorithms are inspired in real ants and the main idea is to create virtual ants that travel into the space of possible solution depositing virtual pheromone proportional to how good a specific solution is. This creates a autocatalytic (positive feedback) process that can be used to generate automatic solutions to very difficult problems. In the present work we show that these algorithms can be used coupled to tight-binding hamiltonians to design conducting polymers with pre-specified properties. The methodology is completely general and can be used for a large number of optimization problems in materials science.

cond-mat.mtrl-sci↗

arXiv2007

Is Small Perfect? Size Limit to Defect Formation in Pyramidal Pt Nanocontacts

We report high resolution transmission electron microscopy and ab initio calculation results for the defect formation in Pt nanocontacts (NCs). Our results show that there is a size limit to the existence of twins (extended structural defects). Defects are always present but blocked away from the tip axes. The twins may act as scattering plane, influencing contact electron transmission for Pt NC at room temperature and Ag/Au NC at low temperature.

cond-mat.mtrl-sci↗

arXiv2007

Atomistic Simulations of the Mechanical Properties of 'Super' Carbon Nanotubes

The mechanical properties of the so-called `super' carbon nanotubes (STs) are investigated using classical molecular dynamics simulations. The STs are built from single walled carbon nanotubes (SWCNTs) connected by Y-like junctions forming an ordered carbon nanotube network that is then rolled into a seamless cylinder. We observed that the ST behavior under tensile tests is similar to the one presented by fishing nets. This interesting behavior provides a way to vary the accessible channels to the inner parts of STs by applying external mechanical load. The Young's modulus is dependent on the ST chirality and it inversely varies with the ST radius. Smaller reduction of breaking strain values due to temperature increase is predicted for zigzag STs compared to SWCNTs. The results show that, for STs with radius ~ 5 nm, the junctions between the constituent SWCNTs play an important role on the fracture process. The Young's modulus and tensile strength were estimated for hierarchical higher-order STs using scaling laws related to the ST fractal dimension. The obtained mechanical properties suggest that STs may be used in the development of new porous, flexible, and high-strength materials.

cond-mat.mtrl-sci↗

arXiv2007

Cobaltocene Encapsulation Into Single-walled Carbon Nanotubes: A Molecular Dynamics Investigation

Recently (PRL 96, 106804 (2006)) it was suggested that cobaltocene(CC) molecules encapsulated into (7,7) carbon nanotubes (CNT@(7,7)) could be the basis for new spintronic devices. We show here based on impact molecular dynamics and DFT calculations that when dynamical aspects are explicitly considered the CC encapsulation into CNT@(7,7) does not occur, it is prevented by a dynamic barrier mainly due to van der Waals interactions. Our results show that CNT@(13,0) having enough axial space for encapsulation but no enough one to allow freely rotation of the cobaltocene molecule would be a feasible candidate to such application.

cond-mat.mtrl-sci↗

arXiv2007

Atomistic Study of the Encapsulation of Diamondoids Inside Carbon Nanotubes

The encapsulation of hydrogen-terminated nanosized diamond fragments (the so-called diamondoids) into armchair single walled carbon nanotubes with diameters in the range of 1.0 up to 2.2 nm has been investigated using classical molecular dynamics simulations. Diameter dependent molecular ordered phases were found for the encapsulation of adamantane (C10H16), diamantane (C14H20), and dihydroxy diamantane (C14H20O2). The same types of chiral ordered phases (double, triple, 4- and 5-stranded helices) observed for the encapsulation of C60 molecules were also observed for diamondoids. On the other hand, some achiral phases comprising layered structures were not observed. Our results also indicate that the modification of diamantane through functionalization with hydroxyl groups can lead to an enhancement of the packing of molecules inside the nanotubes compared to nonfunctionalized compounds. Comparisons to hard-sphere models are also presented revealing differences, specially when more asymmetrical diamondoids are considered. For larger structures (adamantane tetramers) we have not observed long-range ordering for nanotubes with diameters in the range of 1.49 to 2.17 nm but only a tendency to form incomplete helical structures.

cond-mat.mtrl-sci↗

arXiv2004

The emergence of prime numbers as the result of evolutionary strategy

We investigate by means of a simple theoretical model the emergence of prime numbers as life cycles, as those seen for some species of cicadas. The cicadas, more precisely, the Magicicadas spend most of their lives below the ground and then emerge and die in a short period of time. The Magicicadas display an uncommon behavior: their emergence is synchronized and these periods are usually prime numbers. In the current work, we develop a spatially extended model at which preys and predators coexist and can change their evolutionary dynamics through the occurrence of mutations. We verified that prime numbers as life cycles emerge as a result of the evolution of the population. Our results seem to be a first step in order to prove that the development of such strategy is selectively advantageous, especially for those organisms that are highly vulnerable to attacks of predators.

q-bio.PE↗

arXiv2002

Origin of anomalously long interatomic distances in suspended gold chains

The discovery of long bonds in gold atom chains has represented a challenge for physical interpretation. In fact, interatomic distances frequently attain 3.0-3.6 A values and, distances as large as 5.0 A may be seldom observed. Here, we studied gold chains by transmission electron microscopy and performed theoretical calculations using cluster ab initio density functional formalism. We show that the insertion of two carbon atoms is required to account for the longest bonds, while distances above 3 A may be due to a mixture of clean and one C atom contaminated bonds.

physics.atm-clus↗