arXiv subjects

Dragana Ranković

Publications and source records attributed to Dragana Ranković.

6 recordsLinked to original sources

arXiv2026

Double-well potentials and crucial estimations in nonlinear dynamics of microtubules

In the present work, we study the two-component model of microtubules, the basic components of the eukaryotic cytoskeleton. We introduce a couple of estimations, which tremendously simplified the model. The paper is devoted to tangential oscillations of dimers, but we explain that the model can explain the radial oscillations as well. Finally, we study the stability of all solutions of differential equations, describing the dynamics of the microtubules.

physics.bio-ph↗

arXiv2025

Stability analysis of solutions in the helicoidal Peyrard-Bishop model of DNA molecule

We use the helicoidal Peyrard-Bishop model of DNA in the current work. We solve a dynamical equation of motion using a continuum approximation, resulting in kink-solitary waves that travel along the chain. We demonstrate that, whereas supersonic kink solitons are not stable, subsonic ones are. Moreover, we demonstrate the importance of viscosity by showing that no wave is stable in the absence of viscosity.

physics.bio-ph↗

arXiv2024

Two-component model of a microtubule in a semi-discrete approximation

In the present work, we study the nonlinear dynamics of a microtubule, an important part of the cytoskeleton. We use a two-component model of the relevant system. A crucial nonlinear differential equation is solved with semi-discrete approximation, yielding some localised modulated solitary waves called the breathers. A detailed estimation of the existing parameters is provided. The numerical investigation shows that the solutions are robust only if the carrier velocity of the breather wave is higher than its envelope velocity. That disproves the previously accepted solutions based on the equality of these velocities.

physics.bio-ph↗

arXiv2023

Phase transitions in a $Φ^4$ matrix model on a curved noncommutative space

In this contribution, we summarize our recent studies of the phase structure of the Grosse-Wulkenhaar model and its connection to renormalizability. Its action contains a special term that couples the field to the curvature of the noncommutative background space. We first analyze the numerically obtained phase diagram of the model and its three phases: the ordered, the disordered, and the noncommutative stripe phase. Afterward, we discuss the analytical derivation of the effective action and the ordered-to-stripe transition line, and how the obtained expression successfully explains the curvature-induced shift of the triple point compared to the model without curvature. This shift also causes the removal of the stripe phase and makes the model renormalizable.

hep-th↗

arXiv2023

W-potentials in nonlinear biophysics of microtubules

In the present article we investigate the nonlinear dynamics of microtubules, the basic components of the eukaryotic cytoskeleton, and rely on the known general model. A crucial interaction among constitutive particles is modelled using W-potential. Three kinds of this potential are studied, symmetrical and two non-symmetrical. We demonstrate an advantage of the latter ones.

cond-mat.soft↗

arXiv2020

Detecting scaling in phase transitions on the truncated Heisenberg algebra

We construct and analyze a phase diagram of a self-interacting matrix field coupled to curvature of the non-commutative truncated Heisenberg space. The model reduces to the renormalizable Grosse-Wulkenhaar model in an infinite matrix size limit and exhibits a purely non-commutative non-uniformly ordered phase. Particular attention is given to scaling of model's parameters. We additionally provide the infinite matrix size limit for the disordered to ordered phase transition line.

hep-th↗