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Duncan Guthrie

Publications and source records attributed to Duncan Guthrie.

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From Subsumption to Satisfiability: LLM-Assisted Active Learning for OWL Ontologies

In active learning, membership queries (MQs) allow a learner to pose questions to a teacher, such as ''Is every apple a fruit?'', to which the teacher responds correctly with yes or no. These MQs can be viewed as subsumption tests with respect to the target ontology. Inspired by the standard reduction of subsumption to satisfiability in description logics, we reformulate each candidate axiom into its corresponding counter-concept and verbalise it in controlled natural language before presenting it to Large Language Models (LLMs). We introduce LLMs as a third component that provides real-world examples approximating an instance of the counter-concept. This design property ensures that only Type II errors may occur in ontology modelling; in the worst case, these errors merely delay the construction process without introducing inconsistencies. Experimental results on 13 commercial LLMs show that recall, corresponding to Type II errors in our framework, remains stable across several well-established ontologies.

cs.AI

Infection Pressure on Fish in Cages

We address the question of how to connect predictions by hydrodynamic models of how sea lice move in water to observable measures that count the number of lice on each fish in a cage in the water. This question is important for management and regulation of aquacultural practice that tries to maximise food production and minimise risk to the environment. We do this through a simple rule-based model of interaction between sea lice and caged fish. The model is simple: sea lice can attach and detach from a fish. The model has a novel feature, encoding what is known as a master equation producing a time-series of distributions of lice on fish that one might expect to find if a cage full of fish were placed at any given location. To demonstrate how this works, and to arrive at a rough estimate of the interaction rates, we fit a simplified version of the model with three free parameters to publicly available data about an experiment with sentinel cages in Loch Linnhe in Scotland. Our construction, coupled to the hydrodynamic models driven by surveillance data from industrial farms, quantifies the environmental impact as: what would the infection burden look like in a notional cage at any location and how does it change with time?

q-bio.PE