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Durbadal Ghosh

Publications and source records attributed to Durbadal Ghosh.

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A Tutorial for Evaluating Cure Model Appropriateness

In survival analysis, traditional models assume all individuals will eventually experience the event of interest. However, advances in therapeutics have led to multiple clinical contexts with potentially curative therapies, and in these contexts, certain individuals may never experience the event. Statisticians have developed cure models as a methodology to address this challenge. Nonetheless, despite significant statistical advances in cure models, we have seen more limited uptake in biomedical applications, and we hypothesize that this is caused by limited guidance in the appropriate application of cure models. Cure models require specific identifiability conditions for valid parameter estimation, and previous reports have demonstrated significant issues with the inappropriate application of cure models. Existing tutorials for cure models focus on model implementation and either assume or provide only limited guidance on whether cure modeling is appropriate for the given dataset. This tutorial addresses this gap by describing a systematic procedure that integrates clinical judgment, visual inspection of Kaplan-Meier curves, and quantitative evaluation. We provide a worked example using data from a randomized clinical trial in acute myeloid leukemia, and we also summarize findings from a series of other datasets of hematopoietic cell transplantation to suggest broad practical guidance for choosing to apply cure models. By systematically evaluating cure model appropriateness before fitting these models, researchers can achieve more reliable survival analysis and improved clinical decision-making.

stat.ME

A comparative study of two-sample hypothesis tests in the presence of long-term survivors

Time-to-event data with long-term survivors (L-TS), subjects who never experience the event, have been reported in multiple areas of oncology as therapies have improved. Conventional two-sample tests ignore L-TS, but alternatives have been developed in the cure models literature. Because L-TS can induce non-proportional hazards (non-PH), non-PH candidates also exist. However, there has not been a comprehensive comparison of these candidates. Additionally, follow-up is an important consideration for data with L-TS, but there has been limited study of the impact of follow-up time on performance of two-sample tests with L-TS. We conducted a neutral simulation study of the impact of sample size and follow-up time on type I error and power across varying effect sizes for conventional methods, methods adapted for non-PH, and a correctly-specified parametric model. When one or both groups lack L-TS, log-rank tests and one non-PH method typically have the highest power, but order varies. Surprisingly, when both groups have L-TS, these tests have non-monotonic power as a function of follow-up time, while parametric models have monotonic increasing power and the highest power at the longest follow-up time. While absolute power differs, patterns over follow-up are consistent across sample sizes. To address this for practitioners, we devise a numerical approach to predict the potential for non-monotonicity during study planning. We conclude that naïve use of conventional methods can have counterintuitive properties in settings with L-TS, and this work provides knowledge and a tool to anticipate and address these issues.

stat.ME

Analysis of spatially clustered survival data with unobserved covariates using SBART

Usual parametric and semi-parametric regression methods are inappropriate and inadequate for large clustered survival studies when the appropriate functional forms of the covariates and their interactions in hazard functions are unknown, and random cluster effects and cluster-level covariates are spatially correlated. We present a general nonparametric method for such studies under the Bayesian ensemble learning paradigm called Soft Bayesian Additive Regression Trees. Our methodological and computational challenges include large number of clusters, variable cluster sizes, and proper statistical augmentation of the unobservable cluster-level covariate using a data registry different from the main survival study. We use an innovative 3-step approach based on latent variables to address our computational challenges. We illustrate our method and its advantages over existing methods by assessing the impacts of intervention in some county-level and patient-level covariates to mitigate existing racial disparity in breast cancer survival in 67 Florida counties (clusters) using two different data resources. Florida Cancer Registry (FCR) is used to obtain clustered survival data with patient-level covariates, and the Behavioral Risk Factor Surveillance Survey (BRFSS) is used to obtain further data information on an unobservable county-level covariate of Screening Mammography Utilization (SMU).

stat.ME