arXiv subjects

Duygu Sarikaya

Publications and source records attributed to Duygu Sarikaya.

22 records · Page 2Linked to original sources

arXiv2020

Towards Generalizable Surgical Activity Recognition Using Spatial Temporal Graph Convolutional Networks

Modeling and recognition of surgical activities poses an interesting research problem. Although a number of recent works studied automatic recognition of surgical activities, generalizability of these works across different tasks and different datasets remains a challenge. We introduce a modality that is robust to scene variation, and that is able to infer part information such as orientational and relative spatial relationships. The proposed modality is based on spatial temporal graph representations of surgical tools in videos, for surgical activity recognition. To explore its effectiveness, we model and recognize surgical gestures with the proposed modality. We construct spatial graphs connecting the joint pose estimations of surgical tools. Then, we connect each joint to the corresponding joint in the consecutive frames forming inter-frame edges representing the trajectory of the joint over time. We then learn hierarchical spatial temporal graph representations using Spatial Temporal Graph Convolutional Networks (ST-GCN). Our experiments show that learned spatial temporal graph representations perform well in surgical gesture recognition even when used individually. We experiment with the Suturing task of the JIGSAWS dataset where the chance baseline for gesture recognition is 10%. Our results demonstrate 68% average accuracy which suggests a significant improvement. Learned hierarchical spatial temporal graph representations can be used either individually, in cascades or as a complementary modality in surgical activity recognition, therefore provide a benchmark for future studies. To our knowledge, our paper is the first to use spatial temporal graph representations of surgical tools, and pose-based skeleton representations in general, for surgical activity recognition.

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arXiv2020

Detection and Localization of Robotic Tools in Robot-Assisted Surgery Videos Using Deep Neural Networks for Region Proposal and Detection

Video understanding of robot-assisted surgery (RAS) videos is an active research area. Modeling the gestures and skill level of surgeons presents an interesting problem. The insights drawn may be applied in effective skill acquisition, objective skill assessment, real-time feedback, and human-robot collaborative surgeries. We propose a solution to the tool detection and localization open problem in RAS video understanding, using a strictly computer vision approach and the recent advances of deep learning. We propose an architecture using multimodal convolutional neural networks for fast detection and localization of tools in RAS videos. To our knowledge, this approach will be the first to incorporate deep neural networks for tool detection and localization in RAS videos. Our architecture applies a Region Proposal Network (RPN), and a multi-modal two stream convolutional network for object detection, to jointly predict objectness and localization on a fusion of image and temporal motion cues. Our results with an Average Precision (AP) of 91% and a mean computation time of 0.1 seconds per test frame detection indicate that our study is superior to conventionally used methods for medical imaging while also emphasizing the benefits of using RPN for precision and efficiency. We also introduce a new dataset, ATLAS Dione, for RAS video understanding. Our dataset provides video data of ten surgeons from Roswell Park Cancer Institute (RPCI) (Buffalo, NY) performing six different surgical tasks on the daVinci Surgical System (dVSS R ) with annotations of robotic tools per frame.

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arXiv2020

Surgical Gesture Recognition with Optical Flow only

In this paper, we address the open research problem of surgical gesture recognition using motion cues from video data only. We adapt Optical flow ConvNets initially proposed by Simonyan et al.. While Simonyan uses both RGB frames and dense optical flow, we use only dense optical flow representations as input to emphasize the role of motion in surgical gesture recognition, and present it as a robust alternative to kinematic data. We also overcome one of the limitations of Optical flow ConvNets by initializing our model with cross modality pre-training. A large number of promising studies that address surgical gesture recognition highly rely on kinematic data which requires additional recording devices. To our knowledge, this is the first paper that addresses surgical gesture recognition using dense optical flow information only. We achieve competitive results on JIGSAWS dataset, moreover, our model achieves more robust results with less standard deviation, which suggests optical flow information can be used as an alternative to kinematic data for the recognition of surgical gestures.

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arXiv2018

Joint Surgical Gesture and Task Classification with Multi-Task and Multimodal Learning

We propose a novel multi-modal and multi-task architecture for simultaneous low level gesture and surgical task classification in Robot Assisted Surgery (RAS) videos.Our end-to-end architecture is based on the principles of a long short-term memory network (LSTM) that jointly learns temporal dynamics on rich representations of visual and motion features, while simultaneously classifying activities of low-level gestures and surgical tasks. Our experimental results show that our approach is superior compared to an ar- chitecture that classifies the gestures and surgical tasks separately on visual cues and motion cues respectively. We train our model on a fixed random set of 1200 gesture video segments and use the rest 422 for testing. This results in around 42,000 gesture frames sampled for training and 14,500 for testing. For a 6 split experimentation, while the conventional approach reaches an Average Precision (AP) of only 29% (29.13%), our architecture reaches an AP of 51% (50.83%) for 3 tasks and 14 possible gesture labels, resulting in an improvement of 22% (21.7%). Our architecture learns temporal dynamics on rich representations of visual and motion features that compliment each other for classification of low-level gestures and surgical tasks. Its multi-task learning nature makes use of learned joint re- lationships and combinations of shared and task-specific representations. While benchmark studies focus on recognizing gestures that take place under specific tasks, we focus on recognizing common gestures that reoccur across different tasks and settings and significantly perform better compared to conventional architectures.

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