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E. H. Bhuiyan

Publications and source records attributed to E. H. Bhuiyan.

2 recordsLinked to original sources

Finite Element Elastographic Analysis of Kidney MRI for Computational Assessment of Chronic Kidney Disease

Background and Objective: Bridging kidney MRI with patient-specific computational biomechanics may enable accurate, noninvasive assessment of chronic kidney disease. To develop a finite element method (FEM)-based computational elastography framework for estimating renal biomechanical properties from conventional kidney MRI and to evaluate its ability to differentiate chronic kidney disease (CKD) from healthy controls. Methods: Kidney segmentation masks from healthy control and CKD subjects were converted into triangulated surface meshes, and watertight surfaces were tetrahedralized to create volumetric FEM meshes. Kidney tissue was modeled as a nearly incompressible Kelvin-Voigt viscoelastic material. Harmonic wave propagation simulations were performed using FEM, followed by Helmholtz-based elastographic inversion to estimate complex shear modulus distributions. Derived biomechanical parameters were used for CKD classification using machine learning models. Results: FEM-derived stiffness estimates showed consistency with stiffness ranges previously reported in human renal MRE studies and also showed measurable differences between healthy and CKD groups. Machine learning models trained on FEM-derived features achieved classification performance up to 86.26% cross-validation accuracy with an AUC of 0.92. Conclusion: FEM-derived elastographic parameters showed potential for distinguishing CKD from healthy tissue and may provide an alternative for renal biomechanical assessment without dedicated MRE acquisition.

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Deep Learning for Gradient and BCG Artifacts Removal in EEG During Simultaneous fMRI

Simultaneous EEG-fMRI recording combines high temporal and spatial resolution for tracking neural activity. However, its usefulness is greatly limited by artifacts from magnetic resonance (MR), especially gradient artifacts (GA) and ballistocardiogram (BCG) artifacts, which interfere with the EEG signal. To address this issue, we used a denoising autoencoder (DAR), a deep learning framework designed to reduce MR-related artifacts in EEG recordings. Using paired data that includes both artifact-contaminated and MR-corrected EEG from the CWL EEG-fMRI dataset, DAR uses a 1D convolutional autoencoder to learn a direct mapping from noisy to clear signal segments. Compared to traditional artifact removal methods like principal component analysis (PCA), independent component analysis (ICA), average artifact subtraction (AAS), and wavelet thresholding, DAR shows better performance. It achieves a root-mean-squared error (RMSE) of 0.0218 $\pm$ 0.0152, a structural similarity index (SSIM) of 0.8885 $\pm$ 0.0913, and a signal-to-noise ratio (SNR) gain of 14.63 dB. Statistical analysis with paired t-tests confirms that these improvements are significant (p<0.001; Cohen's d>1.2). A leave-one-subject-out (LOSO) cross-validation protocol shows that the model generalizes well, yielding an average RMSE of 0.0635 $\pm$ 0.0110 and an SSIM of 0.6658 $\pm$ 0.0880 across unseen subjects. Additionally, saliency-based visualizations demonstrate that DAR highlights areas with dense artifacts, which makes its decisions easier to interpret. Overall, these results position DAR as a potential and understandable solution for real-time EEG artifact removal in simultaneous EEG-fMRI applications.

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