arXiv subjects

E. Khomenko

Publications and source records attributed to E. Khomenko.

At least 19 recordsLinked to original sources

arXiv2026

Solar vortex detection methods in MHD simulations: impact of magnetic field and spatial resolution

The aim of this paper is to investigate the influence of different magnetic field configurations and spatial resolutions on vortex structures. We analyzed a set of six three-dimensional realistic simulations of the solar atmosphere under three different magnetic field configurations: a small-scale dynamo and two initially vertical implanted magnetic fields of 50 G and 200 G. Three different spatial resolutions have been employed: 20x20x14, 10x10x7 and 5x5x3.5 km^3. We applied two vortex detection methods based on the velocity gradient tensor to all of the models: swirling strength and the SWIRL code. We performed a comparison of vortex locations obtained with both methods, and a statistical analyses of the vortex generation mechanisms, the area covered by vortices, their number and characteristic sizes, and temperature profiles as a function of height. We have confirmed that different magnetic field configurations and spatial resolutions impact the area coverage, number, and sizes of vortices. Likewise, the detection methods impact the statistics obtained. Swirling strength detects vortices with any orientation but a height-dependent threshold is needed. SWIRL only detects vertically-oriented vortices but shows a better agreement with the rotating horizontal velocity field. Simulations with a vertical magnetic field of 50 G support the formation of chromospheric vortices without a photospheric counterpart, while most of the vortices in the 200 G model directly connect the photosphere with the chromosphere. Small-scale dynamo simulations are characterized by a large number of horizontal vortices, with vertical vortices being nearly absent at chromospheric layers. Temperature profiles of vortices confirm that they are hotter than their surroundings, regardless the simulation setup.

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arXiv2025

Modeling Solar Atmosphere Dynamics with MAGEC

Modeling the solar atmosphere is challenging due to its layered structure and multi-scale dynamics. We aim to validate the new radiative MHD code MAGEC, which combines the MANCHA and MAGNUS codes into a finite-volume, shock-capturing framework, and to test its performance through 2D simulations of magneto-convection. MAGEC is MPI-parallelized and includes improvements for coronal modeling, such as LTE radiative losses and a hyperbolic treatment of thermal conduction that mitigates restrictive time steps. We also estimated its numerical viscosity and resistivity. To assess robustness, we performed 2D simulations covering a domain from 2 Mm below the surface to 18.16 Mm into the corona, using both open and closed magnetic-field configurations. For each case, we analyzed steady-state temperature profiles and the contributions to the internal-energy balance at different heights. A separate experiment examined the role of perpendicular thermal conduction. MAGEC reproduced the expected temperature stratification set by boundary conditions and magnetic geometry, and all simulations reached thermal equilibrium. Open-field cases produced higher coronal temperatures than closed, arcade-like fields. Analysis of the explicit and implicit energy terms clarified their relative effects on heating and cooling. Perpendicular thermal conduction, often neglected in coronal models, was found to influence plasma dynamics near reconnection; although local effects are small, they can cumulatively modify the average coronal temperature. These results show that MAGEC is a reliable and efficient tool for radiative MHD simulations, well suited to capturing the shocks and dynamic processes of the solar atmosphere.

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arXiv2025

Fast magneto-acoustic waves in the solar chromosphere: Comparison of single-fluid and two-fluid approximations

Context: The mechanism behind the heating of the solar chromosphere remains unclear. Friction between neutrals and charges is expected to contribute to plasma heating in a partially ionised plasma (PIP). Aims: We aim to study the efficiency of the frictional heating mechanism in partially ionised plasmas by comparing a single-fluid model (1F) using ambipolar diffusion and a two-fluid model (2F) that incorporates elastic collision terms. Methods: We use the code MANCHA-2F to solve the equations for both models numerically. The simulations involve the vertical propagation of fast magneto-acoustic waves from the top of the photosphere through the chromosphere. The model atmosphere is vertically stratified, including a horizontal, homogeneous magnetic field. We also apply the linear theory to supplement the numerical results. Finally, we look at the assumptions of the 1F model to find out what causes the model discrepancies. Results: The results show that the temperature increase for the 1F model is slightly higher than for the 2F model, especially with long-period waves. The wave energy flux indicates that in the 2F model, the wave is transporting less energy upwards. From the linear theory, we find that the wave in the 2F model loses more energy than in the 1F model in the deep layers, but the opposite occurs in the high layers. Conclusions: The efficient dissipation in the 2F model in deep layers reduces the energy flux at the high layers, reducing heating and explaining the temperature differences between models. We attribute those discrepancies to the contribution of pressure forces to the drift velocity and the omission of a term related to the centre of mass frame reference in the 1F energy equation.}

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arXiv2025

Vortex Flows in the Solar Atmosphere: Detection and Heating Mechanisms in 3D MHD Numerical Simulations

Vortex flows are structures associated with the rotation of the plasma and/or the magnetic field that are present throughout the solar atmosphere. In recent years, their study has become increasingly important, as they are present on a wide variety of temporal and spatial scales and can connect several layers of the solar atmosphere. In this work, we focused on the detection and analysis of these structures in an automatic way. We use realistic 3D MHD numerical simulations obtained with the Mancha3D code at different magnetic field configurations and spatial resolutions. The vortex detection has been performed using the novel SWIRL code. We have been able to determine multiple structures associated with small and large scale vortices that extend in height in our simulations. We performed a statistical analysis of these structures, quantifying their number and typical sizes, as well as their temperature and heating profiles, confirming their importance in the energy transport.

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arXiv2025

Convergence study of ambipolar diffusion in realistic simulations of magneto-convection

The aim of this paper is to improve our understanding of the heating mechanisms of the solar chromosphere via realistic three-dimensional (3D) modeling of solar magneto-convection, considering the fact that solar plasma contains a significant fraction of neutral gas. For that we performed simulations of the same physically volume of the Sun, namely 5.76x5.76x2.3 Mm^3 (with 1.4 Mm being above the optical surface), at three different resolutions: 20x20x14, 10x10x7 and 5x5x3.5 km^3. At all three resolutions we compare the time series of simulations with/without ambipolar diffusion, as the main non-ideal heating mechanism due to neutrals. We also compare simulations with three different magnetizations: (1) case of a small-scale dynamo; (2) an initially implanted vertical magnetic field of 50 G; (3) an initially implanted vertical field of 200 G, though not all of them are available at all resolutions. We obtain that the average magnetization of the simulations increases with improving resolution. So does the average magnetic Poynting flux, meaning that there is more magnetic energy in the simulation box at higher resolutions. Ambipolar diffusion operates at relatively large scales, which can be actually numerically resolved with the grid scale of the highest resolution simulations as the ones reported here. We consider two ways of evaluating where the ambipolar scales are numerically resolved: (i) a method to evaluate the numerical diffusion of the simulations and compare it to the physical ambipolar diffusion; (ii) an order of magnitude comparison of spatial scales given by the ambipolar diffusion to our grid resolution. At the resolved locations we compare the average temperature in the simulations with/without ambipolar diffusion, and conclude that the plasma is on average about 600 K hotter after 1200 sec of simulation time when the ambipolar diffusion is included.

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arXiv2024

Observations of umbral flashes in the resonant sunspot chromosphere

In sunspot umbrae, the core of some chromospheric lines exhibits periodic brightness enhancements known as umbral flashes. The consensus is that they are produced by the upward propagation of shock waves. This view has recently been challenged by the detection of downflowing umbral flashes and the confirmation of the existence of a resonant cavity above sunspots. We aim to determine waves' propagating or standing nature in the low umbral chromosphere and confirm or refute the existence of downflowing umbral flashes. Spectroscopic temporal series of Ca II 8542 \AA, Ca II H, and Halpha in a sunspot were acquired with the Swedish Solar Telescope. The Halpha velocity was inferred using bisectors. Simultaneous inversions of the Ca II 8542 \AA\ line and the Ca II H core were performed using the NICOLE code. The nature of the oscillations and insights into the resonant oscillatory pattern were determined by analyzing the phase shift between the velocity signals and examining the temporal evolution. Propagating waves in the low chromosphere are more common in regions with frequent umbral flashes, where the transition region is shifted upward, making resonant cavity signatures less noticeable. In contrast, areas with fewer umbral flashes show velocity fluctuations that align with standing oscillations. Evidence suggests dynamic changes in the location of velocity resonant nodes due to variations in transition region height. Downflowing profiles appear at the onset of some umbral flashes, but upflowing motion dominates during most of the flash. These downflowing flashes are more common in standing umbral flashes. We confirm the existence of a chromospheric resonant cavity above sunspot umbrae produced by wave reflections at the transition region. The oscillatory pattern depends on the transition region height, which exhibits spatial and temporal variations due to the impact of the waves.

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arXiv2024

Mixing, heating and ion-neutral decoupling induced by Rayleigh-Taylor instability in prominence-corona transition regions

This study explores non-linear development of the magnetized Rayleigh-Taylor instability (RTI) in a prominence-corona transition region. Using a two-fluid model of a partially ionized plasma, we compare RTI simulations for several different magnetic field configurations. We follow prior descriptions of the numerical prominence model [Popescu Braileanu et al., 2021a,b, 2023] and explore the charged-neutral fluid coupling and plasma heating in a two-dimensional mixing layer for different magnetic field configurations. We also investigate how the shear in magnetic field surrounding a prominence may impact the release of the gravitational potential energy of the prominence material. We show that the flow decoupling is strongest in the plane normal to the direction of the magnetic field, where neutral pressure gradients drive ion-neutral drifts and frictional heating is balanced by adiabatic cooling of the expanding prominence material. We also show that magnetic field within the mixing plane can lead to faster non-linear release of the gravitational energy driving the RTI, while more efficiently heating the plasma via viscous dissipation of associated plasma flows. We relate the computational results to potential observables by highlighting how integrating over under-resolved two-fluid sub-structure may lead to misinterpretation of observational data.

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arXiv2024

The influence of thermal pressure gradients and ionization (im)balance on the ambipolar diffusion and charge-neutral drifts

Solar partially ionized plasma is frequently modeled using single-fluid (1F) or two-fluid (2F) approaches. In the 1F case, charge-neutral interactions are often described through ambipolar diffusion, while the 2F model fully considers charge-neutral drifts. Here, we expand the definition of the ambipolar diffusion coefficient to include inelastic collisions (ion/rec) in two cases: a VAL3C 1D model and a 2F simulations of the Rayleigh-Taylor instability (RTI) in a solar prominence thread based on \cite{PopLukKho2021aa, PopLukKho2021ab}. On one side, we evaluate the relative importance of the inelastic contribution, compared to elastic and charge-exchange collisions. On the other side, we compare the contributions of ion/rec, thermal pressure, viscosity, and magnetic forces to the charge-neutral drift velocity of the turbulent flow of the RTI. Our analysis reveals that the contribution of inelastic collisions to the ambipolar diffusion coefficient is negligible across the chromosphere, allowing the classical definition of this coefficient to be safely used in 1F modeling. However, in the transition region, the contribution of inelastic collisions can become as significant as that of elastic collisions. Furthermore, we ascertain that the thermal pressure force predominantly influences the charge-neutral drifts in the RTI model, surpassing the impact of the magnetic force.

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arXiv2023

Mancha3D code: Multi-purpose Advanced Non-ideal MHD Code for High resolution simulations in Astrophysics

The Mancha3D code is a versatile tool for numerical simulations of magnetohydrodynamic processes in solar/stellar atmospheres. The code includes non-ideal physics derived from plasma partial ionization, a realistic equation of state and radiative transfer, which allows performing high quality realistic simulations of magneto-convection, as well as idealized simulations of particular processes, such as wave propagation, instabilities or energetic events. The paper summarizes the equations and methods used in the Mancha3D code. It also describes its numerical stability and parallel performance and efficiency. The code is based on a finite difference discretization and memory-saving Runge-Kutta (RK) scheme. It handles non-ideal effects through super-time stepping and Hall diffusion schemes, and takes into account thermal conduction by solving an additional hyperbolic equation for the heat flux. The code is easily configurable to perform different kinds of simulations. Several examples of the code usage are given. It is demonstrated that splitting variables into equilibrium and perturbation parts is essential for simulations of wave propagation in a static background. A perfectly matched layer (PML) boundary condition built into the code greatly facilitates a non-reflective open boundary implementation. Spatial filtering is an important numerical remedy to eliminate grid-size perturbations enhancing the code stability. Parallel performance analysis reveals that the code is strongly memory bound, which is a natural consequence of the numerical techniques used, such as split variables and PML boundary conditions. Both strong and weak scalings show adequate performance up till several thousands of CPUs.

astro-ph.SR↗

arXiv2023

Two fluid dynamics in solar prominences

Solar prominences contain a significant amount of neutral species. The dynamics of the ionised and neutral fluids composing the prominence plasma can be slightly different if the collisional coupling is not strong enough. Large-scale velocities can be quantified by Doppler effect. Small-scale velocities leave their imprint on the width of spectral lines. Here we use one spectral line of ionised and two spectral lines of neutral elements to measure the resolved and unresolved velocities in a prominence with the aim to investigate the possible decoupling of the observed charged and neutral species. A prominence was observed with the German Vacuum Tower Telescope on June 17, 2017. Time series consisting of repeated 10-position scans were performed while recording simultaneously the intensity spectra of the Ca II 854.2 nm, Hα 656.28 nm, and HeD3 587.56 nm lines. The line-of-sight velocities and the Doppler width of the three spectral lines were determined at every spatial position and temporal moment. To make sure all spectral lines were sampling the same plasma volume, we applied selection criteria to identify locations with optically thin plasma. The velocities of the three spectral lines turned out to be very similar over this region, with the ionised Ca II showing velocity excursions systematically larger compared to those of the neutral lines of Hα and He I at some moments. The latter were found to be much closer to each other. The analysis of the Doppler widths indicated that the C aII line shows an excess of unresolved motions. The dynamics of the ionised and neutral plasma components in the observed prominence was very close one to the other. The differences found may indicate that a localised decoupling between ions and neutrals may appear at particular spatial locations or instants of time.

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arXiv2023

Opacity for realistic 3D MHD simulations of cool stellar atmospheres

Context. Realistic 3D time-dependent simulations of stellar near-surface convection employ the opacity binning method for efficient and accurate computation of the radiative energy exchange. The method provides several orders of magnitude of speed-up, but its implementation includes a number of free parameters. Aims. Our aim is to evaluate the accuracy of the opacity binning method as a function of the choice of these free parameters. Methods. The monochromatic opacities computed with the SYNSPEC code are used to construct opacity distribution function (ODF) that is then verified through detailed comparison with the results of the ATLAS code. The opacity binning method is implemented with the SYNSPEC opacities for four representative cool main-sequence stellar spectral types (F3V, G2V, K0V, and M2V). Results. The ODFs from SYNSPEC and ATLAS show consistent results for the opacity and bolometric radiative energy exchange rate Q in case of the F, G, and K -- type stars. Significant differences, coming mainly from the molecular line lists, are found for the M -- type star. It is possible to optimise a small number of bins to reduce the deviation of the results coming from the opacity grouping with respect to the ODF for the F, G, and K -- type stars. In the case of the M -- type star, the inclusion of splitting in wavelength is needed in the grouping to get similar results, with a subsequent increase in computing time. In the limit of a large number of bins, the deviation for all the binning configurations tested saturates and the results do not converge to the ODF solution. Due to this saturation, the Q rate cannot be improved by increasing the number of bins to more than about 20 bins. The more effective strategy is to select the optimal location of fewer bins.

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arXiv2023

A study of the capabilities for inferring atmospheric information from high-spatial-resolution simulations

In this work, we study the accuracy that can be achieved when inferring the atmospheric information from realistic numerical magneto-hydrodynamic simulations that reproduce the spatial resolution we will obtain with future observations made by the 4m class telescopes DKIST and EST. We first study multiple inversion configurations using the SIR code and the Fe I transitions at 630 nm until we obtain minor differences between the input and the inferred atmosphere in a wide range of heights. Also, we examine how the inversion accuracy depends on the noise level of the Stokes profiles. The results indicate that when the majority of the inverted pixels come from strongly magnetised areas, there are almost no restrictions in terms of the noise, obtaining good results for noise amplitudes up to 1$\times10^{-3}$ of $I_c$. At the same time, the situation is different for observations where the dominant magnetic structures are weak, and noise restraints are more demanding. Moreover, we find that the accuracy of the fits is almost the same as that obtained without noise when the noise levels are on the order of 1$\times10^{-4}$of $I_c$. We, therefore, advise aiming for noise values on the order of or lower than 5$\times10^{-4}$ of $I_c$ if observers seek reliable interpretations of the results for the magnetic field vector reliably. We expect those noise levels to be achievable by next-generation 4m class telescopes thanks to an optimised polarisation calibration and the large collecting area of the primary mirror.

astro-ph.SR↗

arXiv2023

Improving the Understanding of Subsurface Structure and Dynamics of Solar Active Regions (A white paper submitted to the decadal survey for solar and space Physics (Heliophysics) -- SSPH 2024-2033)

The goal of helioseismology is to provide accurate information about the Sun's interior from the observations of the wave field at its surface. In the last three decades, both global and local helioseismology studies have made significant advances and breakthroughs in solar physics. However, 3-d mapping of the structure and dynamics of sunspots and active regions below the surface has been a challenging task and are among the longest standing and intriguing puzzles of solar physics due to the complexity of the turbulent and dynamic nature of sunspots. Thus the key problems that need to be addressed during the next decade are: (i) Understanding the wave excitation mechanisms in the quiet Sun and magnetic regions, (ii) Characterizing the wave propagation and transformation in strong and inclined magnetic field regions and understanding the magnetic portals in the chromosphere, (iii) Improving helioseismology techniques and investigating the whole life cycle of active regions, from magnetic flux emergence to dissipation, and (iv) Detecting helioseismic signature of the magnetic flux of active regions before it becomes visible on the surface so as to provide warnings several days before the emergence. For a transformative progress on these problems require full disk, simultaneous Doppler and vector magnetic field measurements of the photosphere up to the chromosphere with a spatial resolution of about 2 arc-sec as well as large-scale radiative MHD simulations of the plasma dynamics from the sub-photosphere to the chromosphere.

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arXiv2022

Magnetic field amplification and structure formation by the Rayleigh-Taylor instability

We report on results of high resolution two fluid non-linear simulations of the Rayleigh Taylor Instability (RTI) at the interface between a solar prominence and the corona. These follow results reported earlier by Popescu Braileanu et al. (2021a,b) on linear and early non-linear RTI dynamics in this environment. The simulations use a two fluid model that includes collisions between neutrals and charges, including ionization/recombination, energy and momentum transfer, and frictional heating. High resolution 2.5D magnetized RTI simulations with the magnetic field dominantly normal to and slightly sheared with respect to the prominence plane demonstrate that in a fully developed state of RTI a large fraction of the gravitational energy of a prominence thread can be converted into quasi-turbulent energy of the magnetic field. RTI magnetic energy generation is further accompanied by magnetic and plasma density structure formation, including dynamic formation, break-up, and merging of current sheets and plasmoid sub-structures. The simulations show the role of flow decoupling and ionization/recombination reactions between the neutrals and charges on the structure formation in magnetized RTI. We provide a careful examination of sources and form of numerical dissipation of the evolving magnetic field structures.

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arXiv2022

Observational and numerical characterization of a recurrent arc-shaped front propagating along a coronal fan

Recurrent, arc-shaped intensity disturbances were detected by EUV channels in an active region. The fronts were observed to propagate along a coronal loop bundle rooted in a small area within a sunspot umbra. Previous works have linked these intensity disturbances to slow magnetoacoustic waves that propagate from the lower atmosphere to the corona along the magnetic field. The slow magnetoacoustic waves propagate at the local cusp speed. However, the measured propagation speeds from the intensity images are usually smaller as they are subject to projection effects due to the inclination of the magnetic field with respect to the line-of-sight. Here, we aim to understand the effect of projection by comparing observed speeds with those from a numerical model. Using multi-wavelength data we determine the periods present in the observations at different heights of the solar atmosphere through Fourier analysis. We calculate the plane-of-sky speeds along one of the loops from the cross-correlation time lags obtained as a function of distance along the loop. We perform a 2D ideal MHD simulation of an active region embedded in a stratified atmosphere. We drive slow waves from the photosphere with a 3 minutes periodicity. Synthetic time-distance maps are generated from the forward-modelled intensities in coronal wavelengths and the projected propagation speeds are calculated. The intensity disturbances show a dominant period between [2-3] minutes at different heights of the atmosphere. The apparent propagation speeds calculated for coronal channels exhibit an accelerated pattern with values increasing from 40 to 120 km/s as the distance along the loop rises. The propagation speeds obtained from the synthetic time-distance maps also exhibit accelerated profiles within a similar range of speeds. We conclude that the accelerated propagation in our observations is due to the projection effect.

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arXiv2022

The European Solar Telescope

The European Solar Telescope (EST) is a project aimed at studying the magnetic connectivity of the solar atmosphere, from the deep photosphere to the upper chromosphere. Its design combines the knowledge and expertise gathered by the European solar physics community during the construction and operation of state-of-the-art solar telescopes operating in visible and near-infrared wavelengths: the Swedish 1m Solar Telescope (SST), the German Vacuum Tower Telescope (VTT) and GREGOR, the French Télescope Héliographique pour l'Étude du Magnétisme et des Instabilités Solaires (THÉMIS), and the Dutch Open Telescope (DOT). With its 4.2 m primary mirror and an open configuration, EST will become the most powerful European ground-based facility to study the Sun in the coming decades in the visible and near-infrared bands. EST uses the most innovative technological advances: the first adaptive secondary mirror ever used in a solar telescope, a complex multi-conjugate adaptive optics with deformable mirrors that form part of the optical design in a natural way, a polarimetrically compensated telescope design that eliminates the complex temporal variation and wavelength dependence of the telescope Mueller matrix, and an instrument suite containing several (etalon-based) tunable imaging spectropolarimeters and several integral field unit spectropolarimeters. This publication summarises some fundamental science questions that can be addressed with the telescope, together with a complete description of its major subsystems.

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arXiv2022

Generalized Fluid Models of the Braginskii Type

Several generalizations of the well-known fluid model of Braginskii (Rev. of Plasma Phys., 1965) are considered. We use the Landau collisional operator and the moment method of Grad. We focus on the 21-moment model that is analogous to the Braginskii model, and we also consider a 22-moment model. Both models are formulated for general multi-species plasmas with arbitrary masses and temperatures, where all the fluid moments are described by their evolution equations. The 21-moment model contains two "heat flux vectors" (3rd and 5th-order moments) and two "viscosity-tensors" (2nd and 4th-order moments). The Braginskii model is then obtained as a particular case of a one ion-electron plasma with similar temperatures, with de-coupled heat fluxes and viscosity-tensors expressed in a quasi-static approximation. We provide all the numerical values of the Braginskii model in a fully analytic form (together with the 4th and 5th-order moments). For multi-species plasmas, the model makes calculation of transport coefficients straightforward. Formulation in fluid moments (instead of Hermite moments) is also suitable for implementation into existing numerical codes. It is emphasized that it is the quasi-static approximation which makes some Braginskii coefficients divergent in a weakly-collisional regime. Importantly, we show that the heat fluxes and viscosity-tensors are coupled even in the linear approximation, and that the fully contracted (scalar) perturbations of the 4th-order moment, which are accounted for in the 22-moment model, modify the energy exchange rates. We also provide several Appendices, which can be useful as a guide for deriving the Braginskii model with the moment method of Grad.

physics.plasm-ph↗

arXiv2022

Modeling the thermal conduction in the solar atmosphere with the code MANCHA3D

Thermal conductivity is one of the important mechanisms of heat transfer in the solar corona. In the limit of strongly magnetized plasma, it is typically modeled by Spitzer's expression where the heat flux is aligned with the magnetic field. This paper describes the implementation of the heat conduction into the code MANCHA3D with an aim of extending single-fluid MHD simulations from the upper convection zone into the solar corona. Two different schemes to model heat conduction are implemented: (1) a standard scheme where a parabolic term is added to the energy equation, and (2) a scheme where the hyperbolic heat flux equation is solved. The first scheme limits the time step due to the explicit integration of a parabolic term, which makes the simulations computationally expensive. The second scheme solves the limitations on the time step by artificially limiting the heat conduction speed to computationally manageable values. The validation of both schemes is carried out with standard tests in one, two, and three spatial dimensions. Furthermore, we implement the model for heat flux derived by Braginskii (1965) in its most general form, when the expression for the heat flux depends on the ratio of the collisional to cyclotron frequencies of the plasma, and, therefore on the magnetic field strength. Additionally, our implementation takes into account the heat conduction in parallel, perpendicular, and transverse directions, and provides the contributions from ions and electrons separately. The model also transitions smoothly between field-aligned conductivity and isotropic conductivity for regions with a low or null magnetic field. Finally, we present a two-dimensional test for heat conduction using realistic values of the solar atmosphere where we prove the robustness of the two schemes implemented.

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