arXiv subjects

Edvin Fako

Publications and source records attributed to Edvin Fako.

8 recordsLinked to original sources

arXiv2026

AdsMind: A Physics-Grounded Multi-Agent System for Self-Correcting Discovery of Adsorption Configurations on Heterogeneous Catalyst Surfaces

Identifying the lowest-energy surface-adsorbate configuration is critical for modeling heterogeneous catalysis, yet exhaustive exploration with ab initio calculations is computationally prohibitive. Machine-learning force fields (MLFFs) accelerate structural relaxation but leave the search over the vast configurational space a major bottleneck, and open-loop large language model (LLM) agents lack a physics-grounded feedback mechanism to correct erroneous initial guesses. We propose AdsMind (Adsorption configuration discovery with Machine intelligence and relaxation feedback), a closed-loop multi-agent framework that enables autonomous error correction through MLFF relaxation feedback. Across four LLM backends, AdsMind achieves consistently high search reliability, with success rates of 100% and 98.8% on the benchmarks AA20 and OCD-GMAE62. Relative to its single-pass (1-Shot) ablation it reduces cross-backend energy dispersion, and it uses only 4.11 and 4.67 MLFF relaxations per case, respectively -- an approximately 14-fold reduction over heuristic enumeration baselines. Density functional theory (DFT) validation using VASP/PBE on six representative AA20 systems shows that the reported open-loop Adsorb-Agent outputs exhibit qualitative adsorption-energy sign errors for molecular adsorbates, whereas AdsMind preserves the correct sign in all tested cases with closer quantitative agreement. AdsMind thus delivers reliability, self-reflection, and interpretability simultaneously, supporting more DFT-informed autonomous chemistry workflows.

cond-mat.mtrl-sci↗

arXiv2026

On the Covalent Fields of Molecule-Surface Interactions

The ambiguity of the active site, the empirical status of Br{\o}nsted-Evans-Polanyi relations, and the unpredictability of linear scaling relation breakdown are three symptoms of a single representational choice: treating chemical affinity as an attribute of discrete geometric sites. Here we show that all three are resolved when chemical affinity is represented as a continuous property of the interface: the covalent field. We present a framework, Covalent Field Theory (CFT), in which active sites emerge as regions where the field sustains a bias toward bond formation beyond the thermal threshold, removing the need for geometric classification. Linear scaling relations are correlation structure in the field across probe families; their breakdown is a topological bifurcation with a precise geometric signature. Br{\o}nsted-Evans-Polanyi correlations arise from the covalent field decomposition, providing a theoretical basis for what has previously been treated as an empirical regularity, demonstrated across ~120,000 candidate pathways. Applied to a high-entropy alloy nanoparticle and a partially reduced high-entropy oxide, CFT maps these properties onto surfaces of arbitrary compositional and structural complexity.

physics.chem-ph↗

arXiv2026

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

cond-mat.mtrl-sci↗

arXiv2025

LeMat-Bulk: aggregating, and de-duplicating quantum chemistry materials databases

The rapid expansion of materials science databases has driven machine learning-based discovery while also posing challenges in data integration, duplication, and interoperability. Robust standardization and de-duplication methods are needed to address these issues and streamline materials research. We present LeMat-Bulk, a unified dataset combining Materials Project, OQMD, and Alexandria, encompassing over 5.3 million PBE-calculated materials and also representing the largest collection of PBESol and SCAN functional calculations. Our methodology standardizes calculations across databases that utilize different parameters, effectively addressing redundancy and enhancing cross-compatibility. To de-duplicate, we propose a hashing function which we termed the Bonding Algorithm Weisfeiller-Lehman (BAWL). We comprehensively benchmark this fingerprint under atomic noise, lattice strain, and symmetry transformations, demonstrating that it outperforms existing fingerprinting techniques such as SLICES, and CLOUD in robustness while offering greater computational efficiency than similarity-based approaches such as Pymatgen's StructureMatcher. Additionally, the fingerprint facilitates the analysis of functional-dependent trends (PBE, PBESol, SCAN) offering a scalable framework for data-driven materials science.

cond-mat.mtrl-sci↗

arXiv2025

Accelerating inverse materials design using generative diffusion models with reinforcement learning

Diffusion models promise to accelerate material design by directly generating novel structures with desired properties, but existing approaches typically require expensive and substantial labeled data ($>$10,000) and lack adaptability. Here we present MatInvent, a general and efficient reinforcement learning workflow that optimizes diffusion models for goal-directed crystal generation. For single-objective designs, MatInvent rapidly converges to target values within 60 iterations ($\sim$ 1,000 property evaluations) across electronic, magnetic, mechanical, thermal, and physicochemical properties. Furthermore, MatInvent achieves robust optimization in design tasks with multiple conflicting properties, successfully proposing low-supply-chain-risk magnets and high-$\kappa$ dielectrics. Compared to state-of-the-art methods, MatInvent exhibits superior generation performance under specified property constraints while dramatically reducing the demand for property computation by up to 378-fold. Compatible with diverse diffusion model architectures and property constraints, MatInvent could offer broad applicability in materials discovery.

physics.chem-ph↗

arXiv2023

A foundation model for atomistic materials chemistry

Atomistic simulations of matter, especially those that leverage first-principles (ab initio) electronic structure theory, provide a microscopic view of the world, underpinning much of our understanding of chemistry and materials science. Over the last decade or so, machine-learned force fields have transformed atomistic modeling by enabling simulations of ab initio quality over unprecedented time and length scales. However, early ML force fields have largely been limited by: (i) the substantial computational and human effort of developing and validating potentials for each particular system of interest; and (ii) a general lack of transferability from one chemical system to the next. Here we show that it is possible to create a general-purpose atomistic ML model, trained on a public dataset of moderate size, that is capable of running stable molecular dynamics for a wide range of molecules and materials. We demonstrate the power of the MACE-MP-0 model - and its qualitative and at times quantitative accuracy - on a diverse set of problems in the physical sciences, including properties of solids, liquids, gases, chemical reactions, interfaces and even the dynamics of a small protein. The model can be applied out of the box as a starting or "foundation" model for any atomistic system of interest and, when desired, can be fine-tuned on just a handful of application-specific data points to reach ab initio accuracy. Establishing that a stable force-field model can cover almost all materials changes atomistic modeling in a fundamental way: experienced users get reliable results much faster, and beginners face a lower barrier to entry. Foundation models thus represent a step towards democratising the revolution in atomic-scale modeling that has been brought about by ML force fields.

physics.chem-ph↗

arXiv2023

Accurate Energy Barriers for Catalytic Reaction Pathways: An Automatic Training Protocol for Machine Learning Force Fields

In this study, we introduce a training protocol for developing machine learning force fields (MLFFs), capable of accurately determining energy barriers in catalytic reaction pathways. The protocol is validated on the extensively explored hydrogenation of carbon dioxide to methanol over indium oxide. With the help of active learning, the final force field obtains energy barriers within 0.05 eV of Density Functional Theory. Thanks to the computational speedup, not only do we reduce the cost of routine in-silico catalytic tasks, but also find a 40\% reduction in the previously established rate-limiting step. Furthermore, we illustrate the importance of finite-temperature effects and compute free energy barriers. The transferability of the protocol is demonstrated on the experimentally relevant, yet unexplored, top-layer reduced indium oxide surface. The ability of MLFFs to enhance our understanding of extensively studied catalysts underscores the need for fast and accurate alternatives to direct ab-intio simulations.

physics.chem-ph↗

arXiv2017

Lattice mismatch as the descriptor of segregation, stability and reactivity of supported thin catalyst films

Increasing demand and high prices of advanced catalysts motivate a constant search for novel active materials with reduced content of noble metals. The development of thin films and core-shell catalysts seem to be a promising strategy along this path. Using Density Functional Theory we have analyzed a number of surface properties of supported bimetallic thin films with composition A3B (where A = Pt, Pd, B = Cu, Ag, Au). We focus on surface segregation, dissolution stability and surface electronic structure. We also address the chemisorption properties of Pd3Au thin films supported by different substrates, by probing the surface reactivity with CO. We find a strong influence of the support in the case of mono- and bilayers, while the surface strain seems to be the predominant factor in determining the surface properties of supported trilayers and thicker films. In particular, we show that the studied properties of the supported trilayers can be predicted from the lattice mismatch between the overlayer and the support. Namely, if the strain dependence of the corresponding quantities for pure strained surfaces is known, the properties of strained supported trilayers can be reliably estimated. The obtained results can be used in the design of novel catalysts and predictions of the surface properties of supported ultrathin catalyst layers.

cond-mat.mtrl-sci↗