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Edward B. Linscott

Publications and source records attributed to Edward B. Linscott.

3 recordsLinked to original sources

Many body study of iron(III) bound human serum transferrin

Transferrins are proteins responsible for transporting metal ions in all vertebrates. However, the iron binding properties of transferrins remain poorly understood. Iron, as a transition metal, forms ions with partially-occupied 3d subshells. The electrons within the 3d orbitals of iron-bound transferrin are therefore highly localized, and interact with one another in a complex manner that cannot be fully characterized by considering each electron separately. In this work, we make use of dynamical mean field theory, a technique that accounts for the strong interactions between these electrons. This is a higher level of theory than has ever been used to study transferrins. We present novel data on the effective spin, multiplet states and optical spectra of iron-bound human serum transferrin.

cond-mat.str-el

ONETEP + TOSCAM: uniting dynamical mean field theory and linear-scaling density functional theory

We introduce the unification of dynamical mean field theory (DMFT) and linear-scaling density functional theory (DFT), as recently implemented in ONETEP, a linear-scaling DFT package, and TOSCAM, a DMFT toolbox. This code can account for strongly correlated electronic behavior while simultaneously including the effects of the environment, making it ideally suited for studying complex and heterogeneous systems containing transition metals and lanthanides, such as metalloproteins. We systematically introduce the necessary formalism, which must account for the non-orthogonal basis set used by ONETEP. In order to demonstrate the capabilities of this code, we apply it to carbon monoxide-ligated iron porphyrin and explore the distinctly quantum-mechanical character of the iron $3d$ electrons during the process of photodissociation.

cond-mat.str-el

The role of spin in the calculation of Hubbard $U$ and Hund's $J$ parameters from first principles

The density functional theory (DFT)+$U$ method is a pragmatic and effective approach for calculating the ground-state properties of strongly-correlated systems, and linear response calculations are widely used to determine the requisite Hubbard parameters from first principles. We provide a detailed treatment of spin within this linear response approach, demonstrating that the conventional Hubbard $U$ formula, unlike the conventional DFT+$U$ corrective functional, incorporates interactions that are off-diagonal in the spin indices and places greater weight on one spin channel over the other. We construct alternative definitions for Hubbard and Hund's parameters that are consistent with the contemporary DFT+$U$ functional, expanding upon the minimum-tracking linear response method. This approach allows Hund's $J$ and spin-dependent $U$ parameters to be calculated with the same ease as for the standard Hubbard $U$. Our methods accurately reproduce the experimental band gap, local magnetic moments, and the valence band edge character of manganese oxide, a canonical strongly-correlated system. We also apply our approach to a complete series of transition-metal complexes [M(H$_2$O)$_6$]$^{n+}$ (for M = Ti to Zn), showing that Hubbard corrections on oxygen atoms are necessary for preserving bond lengths, and demonstrating that our methods are numerically well-behaved even for near-filled subspaces such as in zinc. However, spectroscopic properties appear beyond the reach of the standard DFT+$U$ approach. Collectively, these results shed new light on the role of spin in the calculation of the corrective parameters $U$ and $J$, and point the way towards avenues for further development of DFT+$U$-type methods.

cond-mat.str-el