arXiv subjects

Efstratios Gavves

Publications and source records attributed to Efstratios Gavves.

At least 91 records · Page 5Linked to original sources

arXiv2022

Efficient Neural Causal Discovery without Acyclicity Constraints

Learning the structure of a causal graphical model using both observational and interventional data is a fundamental problem in many scientific fields. A promising direction is continuous optimization for score-based methods, which, however, require constrained optimization to enforce acyclicity or lack convergence guarantees. In this paper, we present ENCO, an efficient structure learning method for directed, acyclic causal graphs leveraging observational and interventional data. ENCO formulates the graph search as an optimization of independent edge likelihoods, with the edge orientation being modeled as a separate parameter. Consequently, we can provide convergence guarantees of ENCO under mild conditions without constraining the score function with respect to acyclicity. In experiments, we show that ENCO can efficiently recover graphs with hundreds of nodes, an order of magnitude larger than what was previously possible, while handling deterministic variables and latent confounders.

cs.LG↗

arXiv2021

WeakSTIL: Weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need

We present WeakSTIL, an interpretable two-stage weak label deep learning pipeline for scoring the percentage of stromal tumor infiltrating lymphocytes (sTIL%) in H&E-stained whole-slide images (WSIs) of breast cancer tissue. The sTIL% score is a prognostic and predictive biomarker for many solid tumor types. However, due to the high labeling efforts and high intra- and interobserver variability within and between expert annotators, this biomarker is currently not used in routine clinical decision making. WeakSTIL compresses tiles of a WSI using a feature extractor pre-trained with self-supervised learning on unlabeled histopathology data and learns to predict precise sTIL% scores for each tile in the tumor bed by using a multiple instance learning regressor that only requires a weak WSI-level label. By requiring only a weak label, we overcome the large annotation efforts required to train currently existing TIL detection methods. We show that WeakSTIL is at least as good as other TIL detection methods when predicting the WSI-level sTIL% score, reaching a coefficient of determination of $0.45\pm0.15$ when compared to scores generated by an expert pathologist, and an AUC of $0.89\pm0.05$ when treating it as the clinically interesting sTIL-high vs sTIL-low classification task. Additionally, we show that the intermediate tile-level predictions of WeakSTIL are highly interpretable, which suggests that WeakSTIL pays attention to latent features related to the number of TILs and the tissue type. In the future, WeakSTIL may be used to provide consistent and interpretable sTIL% predictions to stratify breast cancer patients into targeted therapy arms.

eess.IV↗

arXiv2021

Sparse-shot Learning with Exclusive Cross-Entropy for Extremely Many Localisations

Object localisation, in the context of regular images, often depicts objects like people or cars. In these images, there is typically a relatively small number of objects per class, which usually is manageable to annotate. However, outside the setting of regular images, we are often confronted with a different situation. In computational pathology, digitised tissue sections are extremely large images, whose dimensions quickly exceed 250'000x250'000 pixels, where relevant objects, such as tumour cells or lymphocytes can quickly number in the millions. Annotating them all is practically impossible and annotating sparsely a few, out of many more, is the only possibility. Unfortunately, learning from sparse annotations, or sparse-shot learning, clashes with standard supervised learning because what is not annotated is treated as a negative. However, assigning negative labels to what are true positives leads to confusion in the gradients and biased learning. To this end, we present exclusive cross-entropy, which slows down the biased learning by examining the second-order loss derivatives in order to drop the loss terms corresponding to likely biased terms. Experiments on nine datasets and two different localisation tasks, detection with YOLLO and segmentation with Unet, show that we obtain considerable improvements compared to cross-entropy or focal loss, while often reaching the best possible performance for the model with only 10-40% of annotations.

cs.LG↗

arXiv2021

Federated Mixture of Experts

Federated learning (FL) has emerged as the predominant approach for collaborative training of neural network models across multiple users, without the need to gather the data at a central location. One of the important challenges in this setting is data heterogeneity, i.e. different users have different data characteristics. For this reason, training and using a single global model might be suboptimal when considering the performance of each of the individual user's data. In this work, we tackle this problem via Federated Mixture of Experts, FedMix, a framework that allows us to train an ensemble of specialized models. FedMix adaptively selects and trains a user-specific selection of the ensemble members. We show that users with similar data characteristics select the same members and therefore share statistical strength while mitigating the effect of non-i.i.d data. Empirically, we show through an extensive experimental evaluation that FedMix improves performance compared to using a single global model across a variety of different sources of non-i.i.d.-ness.

cs.LG↗

arXiv2021

Unsharp Mask Guided Filtering

The goal of this paper is guided image filtering, which emphasizes the importance of structure transfer during filtering by means of an additional guidance image. Where classical guided filters transfer structures using hand-designed functions, recent guided filters have been considerably advanced through parametric learning of deep networks. The state-of-the-art leverages deep networks to estimate the two core coefficients of the guided filter. In this work, we posit that simultaneously estimating both coefficients is suboptimal, resulting in halo artifacts and structure inconsistencies. Inspired by unsharp masking, a classical technique for edge enhancement that requires only a single coefficient, we propose a new and simplified formulation of the guided filter. Our formulation enjoys a filtering prior from a low-pass filter and enables explicit structure transfer by estimating a single coefficient. Based on our proposed formulation, we introduce a successive guided filtering network, which provides multiple filtering results from a single network, allowing for a trade-off between accuracy and efficiency. Extensive ablations, comparisons and analysis show the effectiveness and efficiency of our formulation and network, resulting in state-of-the-art results across filtering tasks like upsampling, denoising, and cross-modality filtering. Code is available at \url{https://github.com/shizenglin/Unsharp-Mask-Guided-Filtering}.

cs.CV↗

arXiv2021

Categorical Normalizing Flows via Continuous Transformations

Despite their popularity, to date, the application of normalizing flows on categorical data stays limited. The current practice of using dequantization to map discrete data to a continuous space is inapplicable as categorical data has no intrinsic order. Instead, categorical data have complex and latent relations that must be inferred, like the synonymy between words. In this paper, we investigate \emph{Categorical Normalizing Flows}, that is normalizing flows for categorical data. By casting the encoding of categorical data in continuous space as a variational inference problem, we jointly optimize the continuous representation and the model likelihood. Using a factorized decoder, we introduce an inductive bias to model any interactions in the normalizing flow. As a consequence, we do not only simplify the optimization compared to having a joint decoder, but also make it possible to scale up to a large number of categories that is currently impossible with discrete normalizing flows. Based on Categorical Normalizing Flows, we propose GraphCNF a permutation-invariant generative model on graphs. GraphCNF implements a three step approach modeling the nodes, edges and adjacency matrix stepwise to increase efficiency. On molecule generation, GraphCNF outperforms both one-shot and autoregressive flow-based state-of-the-art.

cs.LG↗

arXiv2020

Rotation Equivariant Siamese Networks for Tracking

Rotation is among the long prevailing, yet still unresolved, hard challenges encountered in visual object tracking. The existing deep learning-based tracking algorithms use regular CNNs that are inherently translation equivariant, but not designed to tackle rotations. In this paper, we first demonstrate that in the presence of rotation instances in videos, the performance of existing trackers is severely affected. To circumvent the adverse effect of rotations, we present rotation-equivariant Siamese networks (RE-SiamNets), built through the use of group-equivariant convolutional layers comprising steerable filters. SiamNets allow estimating the change in orientation of the object in an unsupervised manner, thereby facilitating its use in relative 2D pose estimation as well. We further show that this change in orientation can be used to impose an additional motion constraint in Siamese tracking through imposing restriction on the change in orientation between two consecutive frames. For benchmarking, we present Rotation Tracking Benchmark (RTB), a dataset comprising a set of videos with rotation instances. Through experiments on two popular Siamese architectures, we show that RE-SiamNets handle the problem of rotation very well and out-perform their regular counterparts. Further, RE-SiamNets can accurately estimate the relative change in pose of the target in an unsupervised fashion, namely the in-plane rotation the target has sustained with respect to the reference frame.

cs.CV↗

arXiv2020

Siamese Tracking with Lingual Object Constraints

Classically, visual object tracking involves following a target object throughout a given video, and it provides us the motion trajectory of the object. However, for many practical applications, this output is often insufficient since additional semantic information is required to act on the video material. Example applications of this are surveillance and target-specific video summarization, where the target needs to be monitored with respect to certain predefined constraints, e.g., 'when standing near a yellow car'. This paper explores, tracking visual objects subjected to additional lingual constraints. Differently from Li et al., we impose additional lingual constraints upon tracking, which enables new applications of tracking. Whereas in their work the goal is to improve and extend upon tracking itself. To perform benchmarks and experiments, we contribute two datasets: c-MOT16 and c-LaSOT, curated through appending additional constraints to the frames of the original LaSOT and MOT16 datasets. We also experiment with two deep models SiamCT-DFG and SiamCT-CA, obtained through extending a recent state-of-the-art Siamese tracking method and adding modules inspired from the fields of natural language processing and visual question answering. Through experimental results, we show that the proposed model SiamCT-CA can significantly outperform its counterparts. Furthermore, our method enables the selective compression of videos, based on the validity of the constraint.

cs.CV↗

arXiv2020

Self-Selective Context for Interaction Recognition

Human-object interaction recognition aims for identifying the relationship between a human subject and an object. Researchers incorporate global scene context into the early layers of deep Convolutional Neural Networks as a solution. They report a significant increase in the performance since generally interactions are correlated with the scene (\ie riding bicycle on the city street). However, this approach leads to the following problems. It increases the network size in the early layers, therefore not efficient. It leads to noisy filter responses when the scene is irrelevant, therefore not accurate. It only leverages scene context whereas human-object interactions offer a multitude of contexts, therefore incomplete. To circumvent these issues, in this work, we propose Self-Selective Context (SSC). SSC operates on the joint appearance of human-objects and context to bring the most discriminative context(s) into play for recognition. We devise novel contextual features that model the locality of human-object interactions and show that SSC can seamlessly integrate with the State-of-the-art interaction recognition models. Our experiments show that SSC leads to an important increase in interaction recognition performance, while using much fewer parameters.

cs.CV↗

arXiv2020

PointMixup: Augmentation for Point Clouds

This paper introduces data augmentation for point clouds by interpolation between examples. Data augmentation by interpolation has shown to be a simple and effective approach in the image domain. Such a mixup is however not directly transferable to point clouds, as we do not have a one-to-one correspondence between the points of two different objects. In this paper, we define data augmentation between point clouds as a shortest path linear interpolation. To that end, we introduce PointMixup, an interpolation method that generates new examples through an optimal assignment of the path function between two point clouds. We prove that our PointMixup finds the shortest path between two point clouds and that the interpolation is assignment invariant and linear. With the definition of interpolation, PointMixup allows to introduce strong interpolation-based regularizers such as mixup and manifold mixup to the point cloud domain. Experimentally, we show the potential of PointMixup for point cloud classification, especially when examples are scarce, as well as increased robustness to noise and geometric transformations to points. The code for PointMixup and the experimental details are publicly available.

cs.CV↗

arXiv2020

Tackling Occlusion in Siamese Tracking with Structured Dropouts

Occlusion is one of the most difficult challenges in object tracking to model. This is because unlike other challenges, where data augmentation can be of help, occlusion is hard to simulate as the occluding object can be anything in any shape. In this paper, we propose a simple solution to simulate the effects of occlusion in the latent space. Specifically, we present structured dropout to mimick the change in latent codes under occlusion. We present three forms of dropout (channel dropout, segment dropout and slice dropout) with the various forms of occlusion in mind. To demonstrate its effectiveness, the dropouts are incorporated into two modern Siamese trackers (SiamFC and SiamRPN++). The outputs from multiple dropouts are combined using an encoder network to obtain the final prediction. Experiments on several tracking benchmarks show the benefits of structured dropouts, while due to their simplicity requiring only small changes to the existing tracker models.

cs.CV↗

arXiv2020

PIC: Permutation Invariant Convolution for Recognizing Long-range Activities

Neural operations as convolutions, self-attention, and vector aggregation are the go-to choices for recognizing short-range actions. However, they have three limitations in modeling long-range activities. This paper presents PIC, Permutation Invariant Convolution, a novel neural layer to model the temporal structure of long-range activities. It has three desirable properties. i. Unlike standard convolution, PIC is invariant to the temporal permutations of features within its receptive field, qualifying it to model the weak temporal structures. ii. Different from vector aggregation, PIC respects local connectivity, enabling it to learn long-range temporal abstractions using cascaded layers. iii. In contrast to self-attention, PIC uses shared weights, making it more capable of detecting the most discriminant visual evidence across long and noisy videos. We study the three properties of PIC and demonstrate its effectiveness in recognizing the long-range activities of Charades, Breakfast, and MultiThumos.

cs.CV↗

arXiv2019

BOCK : Bayesian Optimization with Cylindrical Kernels

A major challenge in Bayesian Optimization is the boundary issue (Swersky, 2017) where an algorithm spends too many evaluations near the boundary of its search space. In this paper, we propose BOCK, Bayesian Optimization with Cylindrical Kernels, whose basic idea is to transform the ball geometry of the search space using a cylindrical transformation. Because of the transformed geometry, the Gaussian Process-based surrogate model spends less budget searching near the boundary, while concentrating its efforts relatively more near the center of the search region, where we expect the solution to be located. We evaluate BOCK extensively, showing that it is not only more accurate and efficient, but it also scales successfully to problems with a dimensionality as high as 500. We show that the better accuracy and scalability of BOCK even allows optimizing modestly sized neural network layers, as well as neural network hyperparameters.

stat.ML↗

arXiv2019

Combinatorial Bayesian Optimization using the Graph Cartesian Product

This paper focuses on Bayesian Optimization (BO) for objectives on combinatorial search spaces, including ordinal and categorical variables. Despite the abundance of potential applications of Combinatorial BO, including chipset configuration search and neural architecture search, only a handful of methods have been proposed. We introduce COMBO, a new Gaussian Process (GP) BO. COMBO quantifies "smoothness" of functions on combinatorial search spaces by utilizing a combinatorial graph. The vertex set of the combinatorial graph consists of all possible joint assignments of the variables, while edges are constructed using the graph Cartesian product of the sub-graphs that represent the individual variables. On this combinatorial graph, we propose an ARD diffusion kernel with which the GP is able to model high-order interactions between variables leading to better performance. Moreover, using the Horseshoe prior for the scale parameter in the ARD diffusion kernel results in an effective variable selection procedure, making COMBO suitable for high dimensional problems. Computationally, in COMBO the graph Cartesian product allows the Graph Fourier Transform calculation to scale linearly instead of exponentially. We validate COMBO in a wide array of realistic benchmarks, including weighted maximum satisfiability problems and neural architecture search. COMBO outperforms consistently the latest state-of-the-art while maintaining computational and statistical efficiency.

stat.ML↗

arXiv2019

Tracking-Assisted Segmentation of Biological Cells

U-Net and its variants have been demonstrated to work sufficiently well in biological cell tracking and segmentation. However, these methods still suffer in the presence of complex processes such as collision of cells, mitosis and apoptosis. In this paper, we augment U-Net with Siamese matching-based tracking and propose to track individual nuclei over time. By modelling the behavioural pattern of the cells, we achieve improved segmentation and tracking performances through a re-segmentation procedure. Our preliminary investigations on the Fluo-N2DH-SIM+ and Fluo-N2DH-GOWT1 datasets demonstrate that absolute improvements of up to 3.8 % and 3.4% can be obtained in segmentation and tracking accuracy, respectively.

eess.IV↗

arXiv2019

SafeCritic: Collision-Aware Trajectory Prediction

Navigating complex urban environments safely is a key to realize fully autonomous systems. Predicting future locations of vulnerable road users, such as pedestrians and cyclists, thus, has received a lot of attention in the recent years. While previous works have addressed modeling interactions with the static (obstacles) and dynamic (humans) environment agents, we address an important gap in trajectory prediction. We propose SafeCritic, a model that synergizes generative adversarial networks for generating multiple "real" trajectories with reinforcement learning to generate "safe" trajectories. The Discriminator evaluates the generated candidates on whether they are consistent with the observed inputs. The Critic network is environmentally aware to prune trajectories that are in collision or are in violation with the environment. The auto-encoding loss stabilizes training and prevents mode-collapse. We demonstrate results on two large scale data sets with a considerable improvement over state-of-the-art. We also show that the Critic is able to classify the safety of trajectories.

cs.LG↗

arXiv2019

VideoGraph: Recognizing Minutes-Long Human Activities in Videos

Many human activities take minutes to unfold. To represent them, related works opt for statistical pooling, which neglects the temporal structure. Others opt for convolutional methods, as CNN and Non-Local. While successful in learning temporal concepts, they are short of modeling minutes-long temporal dependencies. We propose VideoGraph, a method to achieve the best of two worlds: represent minutes-long human activities and learn their underlying temporal structure. VideoGraph learns a graph-based representation for human activities. The graph, its nodes and edges are learned entirely from video datasets, making VideoGraph applicable to problems without node-level annotation. The result is improvements over related works on benchmarks: Epic-Kitchen and Breakfast. Besides, we demonstrate that VideoGraph is able to learn the temporal structure of human activities in minutes-long videos.

cs.CV↗

arXiv2019

Increasing Expressivity of a Hyperspherical VAE

Learning suitable latent representations for observed, high-dimensional data is an important research topic underlying many recent advances in machine learning. While traditionally the Gaussian normal distribution has been the go-to latent parameterization, recently a variety of works have successfully proposed the use of manifold-valued latents. In one such work (Davidson et al., 2018), the authors empirically show the potential benefits of using a hyperspherical von Mises-Fisher (vMF) distribution in low dimensionality. However, due to the unique distributional form of the vMF, expressivity in higher dimensional space is limited as a result of its scalar concentration parameter leading to a 'hyperspherical bottleneck'. In this work we propose to extend the usability of hyperspherical parameterizations to higher dimensions using a product-space instead, showing improved results on a selection of image datasets.

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