arXiv subjects

Ekin Dogus Cubuk

Publications and source records attributed to Ekin Dogus Cubuk.

At least 19 recordsLinked to original sources

arXiv2026

AutoNumerics-Zero: Automated Discovery of State-of-the-Art Mathematical Functions

Transcendental functions, such as the exponential, are central to scientific computing, yet they cannot be natively calculated by digital hardware. Instead, computers must approximate these functions by combining basic operations, such as $\{+, -, \times, ÷\}$, using methods like Taylor series. These methods were developed over centuries by mathematicians, who focused on approaches that could attain arbitrary accuracy. However, computers can handle most applications by using only finite-precision types, like float32, where any accuracy beyond the type's precision is effectively discarded. We explore, therefore, whether forgoing arbitrary accuracy can lead to the discovery of more efficient approximations. The evolutionary method of symbolic regression is particularly suitable, as it can search for arbitrary operation combinations and can optimize non-differentiable objectives, such as the number of operations used. Our results show that evolution can discover computer programs that outperform established methods in this setting, despite having no prior mathematical knowledge beyond the calculation of the basic operations. Starting from empty code, symbolic regression constructs programs representing novel mathematical expressions. In particular, we discovered a 10-operation program that approximates the exponential function to 14 significant figures, exceeding the accuracy of previously known approximations of this size by more than 6 orders of magnitude.

cs.NE↗

arXiv2026

Search for thermodynamically stable ambient-pressure superconducting hydrides in GNoME database

Hydrides are considered to be one of the most promising families of compounds for achieving high temperature superconductivity. However, there are very few experimental reports of ambient-pressure hydride superconductivity, and the superconducting critical temperatures ($T_{\rm c}$) are typically less than 10 K. At the same time several hydrides have been predicted to exhibit superconductivity around 100 K at ambient pressure but in thermodynamically unfavorable phases. In this work we aim at assessing the superconducting properties of thermodynamically stable hydride superconductors at room pressure by investigating the GNoME material database, which has been recently released and includes thousands of hydrides thermodynamically stable at 0K. To scan this large material space we have adopted a multi stage approach which combines machine learning for a fast initial evaluation and cutting edge ab initio methods to obtain a reliable estimation of ($T_{\rm c}$). Ultimately we have identified 25 cubic hydrides with ($T_{\rm c}$) above 4.2~K and reach a maximum ($T_{\rm c}$) of 17 K. While these critical temperatures are modest in comparison to some recent predictions, the systems where they are found, being stable, are likely to be experimentally accessible and of potential technological relevance.

cond-mat.supr-con↗

arXiv2025

Computational search for materials having a giant anomalous Hall effect in the pyrochlore and spinel crystal structures

Ferromagnetic pyrochlore and spinel materials with topological flat bands are of interest for their potential to exhibit a giant anomalous Hall effect (AHE). In this work, we present computational predictions of stability and electronic structure for 448 compositions within the pyrochlore (A2B2O7) and spinel (AB2O4) frameworks. Of these, 92 are predicted to be thermodynamically stable or close (< 100 meV/atom) to the convex hull, with trends deviating from expectations based on ionic radius-ratio rules. Thirteen are predicted to adopt a ferromagnetic ground state among the collinear configurations considered. Two additional materials meeting these criteria were also identified from open materials databases. Calculations of anomalous Hall angles (AHA) and conductivities reveal that 11 of the screened materials are promising candidates for spintronic applications requiring high electronic conductivity and a giant AHE. Our results suggest that the AHA can be further enhanced by tuning the Fermi level, for example through chemical doping. Using this approach, we identify five materials whose AHA exceed 0.2 under the approximation of collinear magnetism. Notably, Ag2Pt2O7 exhibits a high AHA of 0.405 when its Fermi level is optimized. These findings provide a roadmap for the targeted synthesis of new pyrochlore and spinel compounds with enhanced AHE properties. They also broaden the compositional design space for these structures and support the discovery of high-performance materials for next-generation spintronic applications.

cond-mat.mtrl-sci↗

arXiv2025

CURIE: Evaluating LLMs On Multitask Scientific Long Context Understanding and Reasoning

Scientific problem-solving involves synthesizing information while applying expert knowledge. We introduce CURIE, a scientific long-Context Understanding,Reasoning and Information Extraction benchmark to measure the potential of Large Language Models (LLMs) in scientific problem-solving and assisting scientists in realistic workflows. This benchmark introduces ten challenging tasks with a total of 580 problems and solution pairs curated by experts in six disciplines - materials science, condensed matter physics, quantum computing, geospatial analysis, biodiversity, and proteins - covering both experimental and theoretical work-flows in science. We evaluate a range of closed and open LLMs on tasks in CURIE which requires domain expertise, comprehension of long in-context information,and multi-step reasoning. While Gemini Flash 2.0 and Claude-3 show consistent high comprehension across domains, the popular GPT-4o and command-R+ fail dramatically on protein sequencing tasks. With the best performance at 32% there is much room for improvement for all models. We hope that insights gained from CURIE can guide the future development of LLMs in sciences. Evaluation code and data are in https://github.com/google/curie

cs.CL↗

arXiv2025

System of Agentic AI for the Discovery of Metal-Organic Frameworks

Generative models and machine learning promise accelerated material discovery in MOFs for CO2 capture and water harvesting but face significant challenges navigating vast chemical spaces while ensuring synthetizability. Here, we present MOFGen, a system of Agentic AI comprising interconnected agents: a large language model that proposes novel MOF compositions, a diffusion model that generates crystal structures, quantum mechanical agents that optimize and filter candidates, and synthetic-feasibility agents guided by expert rules and machine learning. Trained on all experimentally reported MOFs and computational databases, MOFGen generated hundreds of thousands of novel MOF structures and synthesizable organic linkers. Our methodology was validated through high-throughput experiments and the successful synthesis of five "AI-dreamt" MOFs, representing a major step toward automated synthesizable material discovery.

cond-mat.mtrl-sci↗

arXiv2025

A practical guide to machine learning interatomic potentials -- Status and future

The rapid development and large body of literature on machine learning interatomic potentials (MLIPs) can make it difficult to know how to proceed for researchers who are not experts but wish to use these tools. The spirit of this review is to help such researchers by serving as a practical, accessible guide to the state-of-the-art in MLIPs. This review paper covers a broad range of topics related to MLIPs, including (i) central aspects of how and why MLIPs are enablers of many exciting advancements in molecular modeling, (ii) the main underpinnings of different types of MLIPs, including their basic structure and formalism, (iii) the potentially transformative impact of universal MLIPs for both organic and inorganic systems, including an overview of the most recent advances, capabilities, downsides, and potential applications of this nascent class of MLIPs, (iv) a practical guide for estimating and understanding the execution speed of MLIPs, including guidance for users based on hardware availability, type of MLIP used, and prospective simulation size and time, (v) a manual for what MLIP a user should choose for a given application by considering hardware resources, speed requirements, energy and force accuracy requirements, as well as guidance for choosing pre-trained potentials or fitting a new potential from scratch, (vi) discussion around MLIP infrastructure, including sources of training data, pre-trained potentials, and hardware resources for training, (vii) summary of some key limitations of present MLIPs and current approaches to mitigate such limitations, including methods of including long-range interactions, handling magnetic systems, and treatment of excited states, and finally (viii) we finish with some more speculative thoughts on what the future holds for the development and application of MLIPs over the next 3-10+ years.

cond-mat.mtrl-sci↗

arXiv2024

Force field optimization by end-to-end differentiable atomistic simulation

The accuracy of atomistic simulations depends on the precision of force fields. Traditional numerical methods often struggle to optimize the empirical force field parameters for reproducing target properties. Recent approaches rely on training these force fields based on forces and energies from first-principle simulations. However, it is unclear whether these approaches will enable capturing complex material responses such as vibrational, or elastic properties. To this extent, we introduce a framework, employing inner loop simulations and outer loop optimization, that exploits automatic differentiation for both property prediction and force-field optimization by computing gradients of the simulation analytically. We demonstrate the approach by optimizing classical Stillinger-Weber and EDIP potentials for silicon systems to reproduce the elastic constants, vibrational density of states, and phonon dispersion. We also demonstrate how a machine-learned potential can be fine-tuned using automatic differentiation to reproduce any target property such as radial distribution functions. Interestingly, the resulting force field exhibits improved accuracy and generalizability to unseen temperatures than those fine-tuned on energies and forces. Finally, we demonstrate the extension of the approach to optimize the force fields towards multiple target properties. Altogether, differentiable simulations, through the analytical computation of their gradients, offer a powerful tool for both theoretical exploration and practical applications toward understanding physical systems and materials.

cond-mat.mtrl-sci↗

arXiv2024

Scalable Diffusion for Materials Generation

Generative models trained on internet-scale data are capable of generating novel and realistic texts, images, and videos. A natural next question is whether these models can advance science, for example by generating novel stable materials. Traditionally, models with explicit structures (e.g., graphs) have been used in modeling structural relationships in scientific data (e.g., atoms and bonds in crystals), but generating structures can be difficult to scale to large and complex systems. Another challenge in generating materials is the mismatch between standard generative modeling metrics and downstream applications. For instance, common metrics such as the reconstruction error do not correlate well with the downstream goal of discovering stable materials. In this work, we tackle the scalability challenge by developing a unified crystal representation that can represent any crystal structure (UniMat), followed by training a diffusion probabilistic model on these UniMat representations. Our empirical results suggest that despite the lack of explicit structure modeling, UniMat can generate high fidelity crystal structures from larger and more complex chemical systems, outperforming previous graph-based approaches under various generative modeling metrics. To better connect the generation quality of materials to downstream applications, such as discovering novel stable materials, we propose additional metrics for evaluating generative models of materials, including per-composition formation energy and stability with respect to convex hulls through decomposition energy from Density Function Theory (DFT). Lastly, we show that conditional generation with UniMat can scale to previously established crystal datasets with up to millions of crystals structures, outperforming random structure search (the current leading method for structure discovery) in discovering new stable materials.

cs.LG↗

arXiv2024

Scaling (Down) CLIP: A Comprehensive Analysis of Data, Architecture, and Training Strategies

This paper investigates the performance of the Contrastive Language-Image Pre-training (CLIP) when scaled down to limited computation budgets. We explore CLIP along three dimensions: data, architecture, and training strategies. With regards to data, we demonstrate the significance of high-quality training data and show that a smaller dataset of high-quality data can outperform a larger dataset with lower quality. We also examine how model performance varies with different dataset sizes, suggesting that smaller ViT models are better suited for smaller datasets, while larger models perform better on larger datasets with fixed compute. Additionally, we provide guidance on when to choose a CNN-based architecture or a ViT-based architecture for CLIP training. We compare four CLIP training strategies - SLIP, FLIP, CLIP, and CLIP+Data Augmentation - and show that the choice of training strategy depends on the available compute resource. Our analysis reveals that CLIP+Data Augmentation can achieve comparable performance to CLIP using only half of the training data. This work provides practical insights into how to effectively train and deploy CLIP models, making them more accessible and affordable for practical use in various applications.

cs.CV↗

arXiv2023

Accurate Prediction of Experimental Band Gaps from Large Language Model-Based Data Extraction

Machine learning is transforming materials discovery by providing rapid predictions of material properties, which enables large-scale screening for target materials. However, such models require training data. While automated data extraction from scientific literature has potential, current auto-generated datasets often lack sufficient accuracy and critical structural and processing details of materials that influence the properties. Using band gap as an example, we demonstrate Large language model (LLM)-prompt-based extraction yields an order of magnitude lower error rate. Combined with additional prompts to select a subset of experimentally measured properties from pure, single-crystalline bulk materials, this results in an automatically extracted dataset that's larger and more diverse than the largest existing human-curated database of experimental band gaps. Compared to the existing human-curated database, we show the model trained on our extracted database achieves a 19% reduction in the mean absolute error of predicted band gaps. Finally, we demonstrate that LLMs are able to train models predicting band gap on the extracted data, achieving an automated pipeline of data extraction to materials property prediction.

cond-mat.mtrl-sci↗

arXiv2023

Learning and Controlling Silicon Dopant Transitions in Graphene using Scanning Transmission Electron Microscopy

We introduce a machine learning approach to determine the transition dynamics of silicon atoms on a single layer of carbon atoms, when stimulated by the electron beam of a scanning transmission electron microscope (STEM). Our method is data-centric, leveraging data collected on a STEM. The data samples are processed and filtered to produce symbolic representations, which we use to train a neural network to predict transition probabilities. These learned transition dynamics are then leveraged to guide a single silicon atom throughout the lattice to pre-determined target destinations. We present empirical analyses that demonstrate the efficacy and generality of our approach.

cond-mat.mes-hall↗

arXiv2023

Predicting emergence of crystals from amorphous matter with deep learning

Crystallization of the amorphous phases into metastable crystals plays a fundamental role in the formation of new matter, from geological to biological processes in nature to synthesis and development of new materials in the laboratory. Predicting the outcome of such phase transitions reliably would enable new research directions in these areas, but has remained beyond reach with molecular modeling or ab-initio methods. Here, we show that crystallization products of amorphous phases can be predicted in any inorganic chemistry by sampling the crystallization pathways of their local structural motifs at the atomistic level using universal deep learning potentials. We show that this approach identifies the crystal structures of polymorphs that initially nucleate from amorphous precursors with high accuracy across a diverse set of material systems, including polymorphic oxides, nitrides, carbides, fluorides, chlorides, chalcogenides, and metal alloys. Our results demonstrate that Ostwald's rule of stages can be exploited mechanistically at the molecular level to predictably access new metastable crystals from the amorphous phase in material synthesis.

cond-mat.mtrl-sci↗

arXiv2023

Accurate Surface and Finite Temperature Bulk Properties of Lithium Metal at Large Scales using Machine Learning Interaction Potentials

The properties of lithium metal are key parameters in the design of lithium ion and lithium metal batteries. They are difficult to probe experimentally due to the high reactivity and low melting point of lithium as well as the microscopic scales at which lithium exists in batteries where it is found to have enhanced strength, with implications for dendrite suppression strategies. Computationally, there is a lack of empirical potentials that are consistently quantitatively accurate across all properties and ab-initio calculations are too costly. In this work, we train Machine Learning Interaction Potentials (MLIPs) on Density Functional Theory (DFT) data to state-of-the-art accuracy in reproducing experimental and ab-initio results across a wide range of simulations at large length and time scales. We accurately predict thermodynamic properties, phonon spectra, temperature dependence of elastic constants and various surface properties inaccessible using DFT. We establish that there exists a Bell-Evans-Polanyi relation correlating the self-adsorption energy and the minimum surface diffusion barrier for high Miller index facets.

cond-mat.mtrl-sci↗

arXiv2023

Tied-Augment: Controlling Representation Similarity Improves Data Augmentation

Data augmentation methods have played an important role in the recent advance of deep learning models, and have become an indispensable component of state-of-the-art models in semi-supervised, self-supervised, and supervised training for vision. Despite incurring no additional latency at test time, data augmentation often requires more epochs of training to be effective. For example, even the simple flips-and-crops augmentation requires training for more than 5 epochs to improve performance, whereas RandAugment requires more than 90 epochs. We propose a general framework called Tied-Augment, which improves the efficacy of data augmentation in a wide range of applications by adding a simple term to the loss that can control the similarity of representations under distortions. Tied-Augment can improve state-of-the-art methods from data augmentation (e.g. RandAugment, mixup), optimization (e.g. SAM), and semi-supervised learning (e.g. FixMatch). For example, Tied-RandAugment can outperform RandAugment by 2.0% on ImageNet. Notably, using Tied-Augment, data augmentation can be made to improve generalization even when training for a few epochs and when fine-tuning. We open source our code at https://github.com/ekurtulus/tied-augment/tree/main.

cs.CV↗

arXiv2022

LidarAugment: Searching for Scalable 3D LiDAR Data Augmentations

Data augmentations are important in training high-performance 3D object detectors for point clouds. Despite recent efforts on designing new data augmentations, perhaps surprisingly, most state-of-the-art 3D detectors only use a few simple data augmentations. In particular, different from 2D image data augmentations, 3D data augmentations need to account for different representations of input data and require being customized for different models, which introduces significant overhead. In this paper, we resort to a search-based approach, and propose LidarAugment, a practical and effective data augmentation strategy for 3D object detection. Unlike previous approaches where all augmentation policies are tuned in an exponentially large search space, we propose to factorize and align the search space of each data augmentation, which cuts down the 20+ hyperparameters to 2, and significantly reduces the search complexity. We show LidarAugment can be customized for different model architectures with different input representations by a simple 2D grid search, and consistently improve both convolution-based UPillars/StarNet/RSN and transformer-based SWFormer. Furthermore, LidarAugment mitigates overfitting and allows us to scale up 3D detectors to much larger capacity. In particular, by combining with latest 3D detectors, our LidarAugment achieves a new state-of-the-art 74.8 mAPH L2 on Waymo Open Dataset.

cs.CV↗

arXiv2022

What does a deep neural network confidently perceive? The effective dimension of high certainty class manifolds and their low confidence boundaries

Deep neural network classifiers partition input space into high confidence regions for each class. The geometry of these class manifolds (CMs) is widely studied and intimately related to model performance; for example, the margin depends on CM boundaries. We exploit the notions of Gaussian width and Gordon's escape theorem to tractably estimate the effective dimension of CMs and their boundaries through tomographic intersections with random affine subspaces of varying dimension. We show several connections between the dimension of CMs, generalization, and robustness. In particular we investigate how CM dimension depends on 1) the dataset, 2) architecture (including ResNet, WideResNet \& Vision Transformer), 3) initialization, 4) stage of training, 5) class, 6) network width, 7) ensemble size, 8) label randomization, 9) training set size, and 10) robustness to data corruption. Together a picture emerges that higher performing and more robust models have higher dimensional CMs. Moreover, we offer a new perspective on ensembling via intersections of CMs. Our code is at https://github.com/stanislavfort/slice-dice-optimize/

cs.LG↗

arXiv2022

PolyLoss: A Polynomial Expansion Perspective of Classification Loss Functions

Cross-entropy loss and focal loss are the most common choices when training deep neural networks for classification problems. Generally speaking, however, a good loss function can take on much more flexible forms, and should be tailored for different tasks and datasets. Motivated by how functions can be approximated via Taylor expansion, we propose a simple framework, named PolyLoss, to view and design loss functions as a linear combination of polynomial functions. Our PolyLoss allows the importance of different polynomial bases to be easily adjusted depending on the targeting tasks and datasets, while naturally subsuming the aforementioned cross-entropy loss and focal loss as special cases. Extensive experimental results show that the optimal choice within the PolyLoss is indeed dependent on the task and dataset. Simply by introducing one extra hyperparameter and adding one line of code, our Poly-1 formulation outperforms the cross-entropy loss and focal loss on 2D image classification, instance segmentation, object detection, and 3D object detection tasks, sometimes by a large margin.

cs.CV↗

arXiv2021

Learn2Hop: Learned Optimization on Rough Landscapes

Optimization of non-convex loss surfaces containing many local minima remains a critical problem in a variety of domains, including operations research, informatics, and material design. Yet, current techniques either require extremely high iteration counts or a large number of random restarts for good performance. In this work, we propose adapting recent developments in meta-learning to these many-minima problems by learning the optimization algorithm for various loss landscapes. We focus on problems from atomic structural optimization--finding low energy configurations of many-atom systems--including widely studied models such as bimetallic clusters and disordered silicon. We find that our optimizer learns a 'hopping' behavior which enables efficient exploration and improves the rate of low energy minima discovery. Finally, our learned optimizers show promising generalization with efficiency gains on never before seen tasks (e.g. new elements or compositions). Code will be made available shortly.

cs.LG↗