arXiv subjects

Eleni D. Koronaki

Publications and source records attributed to Eleni D. Koronaki.

11 recordsLinked to original sources

arXiv2026

Conformal Disentanglement and Latent-Space Curation: A Neural Framework for Perspective Synthesis, Differentiation and Targeted Generation

Many scientific and engineering problems involve observing a common phenomenon through multiple heterogeneous sensors or measurement modalities. Such observations typically contain both information shared across sensors, reflecting the underlying system, and sensor-specific or extraneous components arising from measurement processes or environmental effects. Disentangling these contributions is essential when sensor-independent observations are unavailable. We propose a neural autoencoder framework that explicitly separates shared and sensor-specific latent variables from multi-sensor data. The architecture enforces geometric independence between latent components through structural constraints and orthogonality-based regularization, yielding interpretable and disentangled representations. Building on this representation, we then introduce a latent-space generative methodology in which generative models are tuned/"restricted" on selected disentangled latent subspaces; we then constructively combine disentangled observed latent variables to conditionally synthesize new samples via trained decoders. This enables consistent data generation with prescribed shared (or sensor-specific) characteristics. It also supports cross-sensor inference by consistently sampling distributions over plausible measurements in unobserved modalities. We demonstrate the approach on several computational examples, showing effective disentanglement, targeted data generation, and modality imputation in heterogeneous sensing settings.

cs.LG↗

arXiv2026

Learning to Choose: An Empowerment-Guided Multi-Agent System with semantic communication for Adaptive Method Selection

Automating scientific computing workflows requires more than generating executable code: autonomous systems must also select appropriate computational strategies, implement them faithfully, and ensure that the resulting outcomes remain causally attributable to the decisions that produced them. In multi-agent pipelines, this process is particularly fragile, as small inconsistencies between agent intentions and actions can lead to semantic drift, where the eventually executed procedure no longer reflects the originally selected strategy, thereby corrupting downstream evaluation and adaptation. In this work, motivated by the ATHENA framework (Toscano et al., 2025; Toscano et al., 2026) and the concept of empowerment (Yiu et al., 2025), we introduce a multi-agent framework that combines contextual bandits with structured inter-agent communication and, most importantly, semantic checkpoints that preserve action-outcome fidelity throughout the pipeline. The system integrates specialized large language model (LLM) agents, grounded code generation, and self-healing execution loops within an adaptive decision-making architecture. Interpreting the framework through the lens of empowerment, we show that reliable autonomous learning requires not only identifying high-quality actions, but also preserving the integrity of their propagation across agents. Using sensitivity analysis and uncertainty quantification workflows as representative case studies, we demonstrate that unchecked semantic drift degrades policy learning, whereas the proposed framework improves convergence, robustness, and adaptation to novel problem contexts. These results suggest a broader design principle for scientific multi-agent systems: adaptive decision-making must be coupled with explicit mechanisms that guarantee semantic consistency and reliable information flow across the computational pipeline.

cs.AI↗

arXiv2025

Data-driven inverse uncertainty quantification: application to the Chemical Vapor Deposition Reactor Modeling

This study presents a Bayesian framework for (inverse) uncertainty quantification and parameter estimation in a two-step Chemical Vapor Deposition coating process using production data. We develop an XGBoost surrogate model that maps reactor setup parameters to coating thickness measurements, enabling efficient Bayesian analysis while reducing sampling costs. The methodology handles a mixture of data including continuous, discrete integer, binary, and encoded categorical variables. We establish parameter prior distributions through Bayesian Model Selection and perform Inverse Uncertainty Quantification via weighted Approximate Bayesian Computation with summary statistics, providing robust parameter credible intervals while filtering measurement noise across multiple reactor locations. Furthermore, we employ clustering methods guided by geometry embeddings to focus analysis within homogeneous production groups. This integrated approach provides a validated tool for improving industrial process control under uncertainty.

stat.OT↗

arXiv2025

Implementing NLPs in industrial process modeling: Addressing Categorical Variables

Important variables of processes are often categorical, i.e. names or labels representing, e.g. categories of inputs, or types of reactors or a sequence of steps. In this work, we use Natural Language Processing Models to derive embeddings of such inputs that represent their actual meaning, or reflect the "distances" between categories, i.e. how similar or dissimilar they are. This is a marked difference from the current standard practice of using binary, or one-hot encoding to replace categorical variables with sequences of ones and zeros. Combined with dimensionality reduction techniques, either linear such as Principal Component Analysis, or nonlinear such as Uniform Manifold Approximation and Projection, the proposed approach leads to a meaningful, low-dimensional feature space. The significance of obtaining meaningful embeddings is illustrated in the context of an industrial coating process for cutting tools that includes both numerical and categorical inputs. In this industrial process, subject matter expertise suggests that the categorical inputs are critical for determining the final outcome but this cannot be taken into account with the current state-of-the-art. The proposed approach enables feature importance which is a marked improvement compared to the current state-of-the-art in the encoding of categorical variables. The proposed approach is not limited to the case-study presented here and is suitable for applications with similar mix of categorical and numerical critical inputs.

cs.LG↗

arXiv2024

On Learning what to Learn: heterogeneous observations of dynamics and establishing (possibly causal) relations among them

Before we attempt to learn a function between two (sets of) observables of a physical process, we must first decide what the inputs and what the outputs of the desired function are going to be. Here we demonstrate two distinct, data-driven ways of initially deciding ``the right quantities'' to relate through such a function, and then proceed to learn it. This is accomplished by processing multiple simultaneous heterogeneous data streams (ensembles of time series) from observations of a physical system: multiple observation processes of the system. We thus determine (a) what subsets of observables are common between the observation processes (and therefore observable from each other, relatable through a function); and (b) what information is unrelated to these common observables, and therefore particular to each observation process, and not contributing to the desired function. Any data-driven function approximation technique can subsequently be used to learn the input-output relation, from k-nearest neighbors and Geometric Harmonics to Gaussian Processes and Neural Networks. Two particular ``twists'' of the approach are discussed. The first has to do with the identifiability of particular quantities of interest from the measurements. We now construct mappings from a single set of observations of one process to entire level sets of measurements of the process, consistent with this single set. The second attempts to relate our framework to a form of causality: if one of the observation processes measures ``now'', while the second observation process measures ``in the future'', the function to be learned among what is common across observation processes constitutes a dynamical model for the system evolution.

cs.LG↗

arXiv2024

Discovering deposition process regimes: leveraging unsupervised learning for process insights, surrogate modeling, and sensitivity analysis

This work introduces a comprehensive approach utilizing data-driven methods to elucidate the deposition process regimes in Chemical Vapor Deposition (CVD) reactors and the interplay of physical mechanism that dominate in each one of them. Through this work, we address three key objectives. Firstly, our methodology relies on process outcomes, derived by a detailed CFD model, to identify clusters of "outcomes" corresponding to distinct process regimes, wherein the relative influence of input variables undergoes notable shifts. This phenomenon is experimentally validated through Arrhenius plot analysis, affirming the efficacy of our approach. Secondly, we demonstrate the development of an efficient surrogate model, based on Polynomial Chaos Expansion (PCE), that maintains accuracy, facilitating streamlined computational analyses. Finally, as a result of PCE, sensitivity analysis is made possible by means of Sobol' indices, that quantify the impact of process inputs across identified regimes. The insights gained from our analysis contribute to the formulation of hypotheses regarding phenomena occurring beyond the transition regime. Notably, the significance of temperature even in the diffusion-limited regime, as evidenced by the Arrhenius plot, suggests activation of gas phase reactions at elevated temperatures. Importantly, our proposed methods yield insights that align with experimental observations and theoretical principles, aiding decision-making in process design and optimization. By circumventing the need for costly and time-consuming experiments, our approach offers a pragmatic pathway towards enhanced process efficiency. Moreover, this study underscores the potential of data-driven computational methods for innovating reactor design paradigms.

physics.chem-ph↗

arXiv2024

Integrating supervised and unsupervised learning approaches to unveil critical process inputs

This study introduces a machine learning framework tailored to large-scale industrial processes characterized by a plethora of numerical and categorical inputs. The framework aims to (i) discern critical parameters influencing the output and (ii) generate accurate out-of-sample qualitative and quantitative predictions of production outcomes. Specifically, we address the pivotal question of the significance of each input in shaping the process outcome, using an industrial Chemical Vapor Deposition (CVD) process as an example. The initial objective involves merging subject matter expertise and clustering techniques exclusively on the process output, here, coating thickness measurements at various positions in the reactor. This approach identifies groups of production runs that share similar qualitative characteristics, such as film mean thickness and standard deviation. In particular, the differences of the outcomes represented by the different clusters can be attributed to differences in specific inputs, indicating that these inputs are critical for the production outcome. Leveraging this insight, we subsequently implement supervised classification and regression methods using the identified critical process inputs. The proposed methodology proves to be valuable in scenarios with a multitude of inputs and insufficient data for the direct application of deep learning techniques, providing meaningful insights into the underlying processes.

cs.LG↗

arXiv2024

Nonlinear Manifold Learning Determines Microgel Size from Raman Spectroscopy

Polymer particle size constitutes a crucial characteristic of product quality in polymerization. Raman spectroscopy is an established and reliable process analytical technology for in-line concentration monitoring. Recent approaches and some theoretical considerations show a correlation between Raman signals and particle sizes but do not determine polymer size from Raman spectroscopic measurements accurately and reliably. With this in mind, we propose three alternative machine learning workflows to perform this task, all involving diffusion maps, a nonlinear manifold learning technique for dimensionality reduction: (i) directly from diffusion maps, (ii) alternating diffusion maps, and (iii) conformal autoencoder neural networks. We apply the workflows to a data set of Raman spectra with associated size measured via dynamic light scattering of 47 microgel (cross-linked polymer) samples in a diameter range of 208nm to 483 nm. The conformal autoencoders substantially outperform state-of-the-art methods and results for the first time in a promising prediction of polymer size from Raman spectra.

cs.LG↗

arXiv2023

Nonlinear dimensionality reduction then and now: AIMs for dissipative PDEs in the ML era

This study presents a collection of purely data-driven workflows for constructing reduced-order models (ROMs) for distributed dynamical systems. The ROMs we focus on, are data-assisted models inspired by, and templated upon, the theory of Approximate Inertial Manifolds (AIMs); the particular motivation is the so-called post-processing Galerkin method of Garcia-Archilla, Novo and Titi. Its applicability can be extended: the need for accurate truncated Galerkin projections and for deriving closed-formed corrections can be circumvented using machine learning tools. When the right latent variables are not a priori known, we illustrate how autoencoders as well as Diffusion Maps (a manifold learning scheme) can be used to discover good sets of latent variables and test their explainability. The proposed methodology can express the ROMs in terms of (a) theoretical (Fourier coefficients), (b) linear data-driven (POD modes) and/or (c) nonlinear data-driven (Diffusion Maps) coordinates. Both Black-Box and (theoretically-informed and data-corrected) Gray-Box models are described; the necessity for the latter arises when truncated Galerkin projections are so inaccurate as to not be amenable to post-processing. We use the Chafee-Infante reaction-diffusion and the Kuramoto-Sivashinsky dissipative partial differential equations to illustrate and successfully test the overall framework.

math.DS↗

arXiv2023

Physics-agnostic and Physics-infused machine learning for thin films flows: modeling, and predictions from small data

Numerical simulations of multiphase flows are crucial in numerous engineering applications, but are often limited by the computationally demanding solution of the Navier-Stokes (NS) equations. Here, we present a data-driven workflow where a handful of detailed NS simulation data are leveraged into a reduced-order model for a prototypical vertically falling liquid film. We develop a physics-agnostic model for the film thickness, achieving a far better agreement with the NS solutions than the asymptotic Kuramoto-Sivashinsky (KS) equation. We also develop two variants of physics-infused models providing a form of calibration of a low-fidelity model (i.e. the KS) against a few high-fidelity NS data. Finally, predictive models for missing data are developed, for either the amplitude, or the full-field velocity and even the flow parameter from partial information. This is achieved with the so-called "Gappy Diffusion Maps", which we compare favorably to its linear counterpart, Gappy POD.

physics.flu-dyn↗

arXiv2023

From partial data to out-of-sample parameter and observation estimation with Diffusion Maps and Geometric Harmonics

A data-driven framework is presented, that enables the prediction of quantities, either observations or parameters, given sufficient partial data. The framework is illustrated via a computational model of the deposition of Cu in a Chemical Vapor Deposition (CVD) reactor, where the reactor pressure, the deposition temperature and feed mass flow rate are important process parameters that determine the outcome of the process. The sampled observations are high-dimensional vectors containing the outputs of a detailed CFD steady-state model of the process, i.e. the values of velocity, pressure, temperature, and species mass fractions at each point in the discretization. A machine learning workflow is presented, able to predict out-of-sample (a) observations (e.g. mass fraction in the reactor) given process parameters (e.g. inlet temperature); (b) process parameters given observation data; and (c) partial observations (e.g. temperature in the reactor) given other partial observations (e.g. mass fraction in the reactor). The proposed workflow relies on the manifold learning schemes Diffusion Maps and the associated Geometric Harmonics. Diffusion Maps is used for discovering a reduced representation of the available data, and Geometric Harmonics for extending functions defined on the manifold. In our work a special use case of Geometric Harmonics is formulated and implemented, which we call Double Diffusion Maps, to map from the reduced representation back to (partial) observations and process parameters. A comparison of our manifold learning scheme to the traditional Gappy-POD approach is provided: ours can be thought of as a "Gappy DMAP" approach. The presented methodology is easily transferable to application domains beyond reactor engineering.

math.NA↗