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Eleonora Vercesi

Publications and source records attributed to Eleonora Vercesi.

8 recordsLinked to original sources

TSP with Predictions: Heatmap to Tour with Provable Guarantees

The Traveling Salesperson Problem (TSP) has long served as a benchmark for evaluating the strength of optimization techniques in the classical theory of algorithms. In recent efforts to apply ML to algorithmic problems, TSP has also become a natural testbed for the development of ML-based techniques. A common approach is to train a neural network to output a heatmap estimating the likelihood of each edge to be part of the optimal tour; however, converting such a heatmap into an actual tour remains a non-trivial and often computationally intensive step. In this work, we propose algorithms for transforming heatmaps into tours with theoretical guarantees linking the achieved approximation ratio to the quality of the provided heatmap. In the spirit of algorithms with predictions, our results can be described as $(1+2\frac{\eta}{\mathrm{OPT}})$-approximation algorithms, where $\eta$ denotes the L1 distance between the prediction (heatmap) and an optimal solution (tour). Since the previous works lack such explicit guarantees, we compare our approach against them experimentally.

cs.DS

The Integrality Gap of the Traveling Salesman Problem is $4/3$ if the LP Solution Has at Most $n+6$ Non-zero Components

We address the classical Dantzig - Fulkerson - Johnson formulation of the symmetric metric Traveling Salesman Problem and study the integrality gap of its linear relaxation, namely the Subtour Elimination Problem (SEP). This integrality gap is conjectured to be 4/3. We prove that, when solving a problem on n nodes, if the optimal SEP solution has at most n + 6 non-zero components, then the conjecture is true. To establish this result, we devise a new methodology that combines theoretical analysis and computational verification.

cs.DM

On the integrality Gap of Small Asymmetric Traveling Salesman Problems: A Polyhedral and Computational Approach

In this paper, we investigate the integrality gap of the Asymmetric Traveling Salesman Problem (ATSP) with respect to the linear relaxation given by the Asymmetric Subtour Elimination Problem (ASEP) for instances with $n$ nodes, where $n$ is small. In particular, we focus on the geometric properties and symmetries of the ASEP polytope ($P^{n}_{ASEP}$) and its vertices. The polytope's symmetries are exploited to design a heuristic pivoting algorithm to search vertices where the integrality gap is maximized. Furthermore, a general procedure for the extension of vertices from $P^{n}_{ASEP}$ to $P^{n + 1}_{ASEP}$ is defined. The generated vertices improve the known lower bounds of the integrality gap for $ 16 \leq n \leq 22$ and, provide small hard-to-solve ATSP instances.

math.OC

Branch-and-Bound Algorithms as Polynomial-time Approximation Schemes

Branch-and-bound algorithms (B&B) and polynomial-time approximation schemes (PTAS) are two seemingly distant areas of combinatorial optimization. We intend to (partially) bridge the gap between them while expanding the boundary of theoretical knowledge on the B\&B framework. Branch-and-bound algorithms typically guarantee that an optimal solution is eventually found. However, we show that the standard implementation of branch-and-bound for certain knapsack and scheduling problems also exhibits PTAS-like behavior, yielding increasingly better solutions within polynomial time. Our findings are supported by computational experiments and comparisons with benchmark methods. This paper is an extended version of a paper accepted at ICALP 2025

cs.DS

Lower bounds for the integrality gap of the bi-directed cut formulation of the Steiner Tree Problem

In this work, we study the metric Steiner Tree problem on graphs focusing on computing lower bounds for the integrality gap of the bi-directed cut (BCR) formulation and introducing a novel formulation, the Complete Metric (CM) model, specifically designed to address the weakness of the BCR formulation on metric instances. A key contribution of our work is extending the Gap problem, previously explored in the context of the Traveling Salesman problems, to the metric Steiner Tree problem. To tackle the Gap problem for Steiner Tree instances, we first establish several structural properties of the CM formulation. We then classify the isomorphism classes of the vertices within the CM polytope, revealing a correspondence between the vertices of the BCR and CM polytopes. Computationally, we exploit these structural properties to design two complementary heuristics for finding nontrivial small metric Steiner instances with a large integrality gap. We present several vertices for graphs with a number of nodes <=10, which realize the best-known lower bounds on the integrality gap for the CM and the BCR formulations. We conclude the paper by presenting two new conjectures on the integrality gap of the BCR and CM formulations for small graphs.

math.OC

On the generation of Metric TSP instances with a large integrality gap by branch-and-cut

This paper introduces a computational method for generating metric Travelling Salesman Problem (TSP) instances having a large integrality gap. The method is based on the solution of an integer programming problem, called IH-OPT, that takes as input a fractional solution of the Subtour Elimination Problem (SEP) on a TSP instance and computes a TSP instance having an integrality gap larger than or equal to the integrality gap of the first instance. The decision variables of IH-OPT are the entries of the TSP cost matrix, and the constraints are defined by the intersection of the metric cone with an exponential number of inequalities, one for each possible TSP tour. Given the very large number of constraints, we have implemented a branch-and-cut algorithm for solving IH-OPT. Then, by sampling cost vectors over the metric polytope and by solving the corresponding SEP, we can generate random fractional vertices of the SEP polytope. If we solve the IH-OPT problem for every sampled vertex using our branch-and-cut algorithm, we can select the generated TSP instance (i.e., cost vector), yielding the longest runtime for Concorde, the state-of-the-art TSP solver. Our computational results show that our method is very effective in producing challenging instances. As a by-product, we release the Hard-TSPLIB, a library of 41 small metric TSP instances which have a large integrality gap and are challenging in terms of runtime for Concorde.

math.OC

A kinetic description of the body size distributions of species

In this paper, by resorting to classical methods of statistical mechanics, we build a kinetic model able to reproduce the observed statistical weight distribution of many diverse species. The kinetic description of the time variations of the weight distribution is based on elementary interactions that describe in a qualitative and quantitative way successive evolutionary updates, and determine explicit equilibrium distributions. Numerical fittings on mammalian eutherians of the order Chiroptera population illustrates the effectiveness of the approach.

q-bio.PE

The Gene Mover's Distance: Single-cell similarity via Optimal Transport

This paper introduces the Gene Mover's Distance, a measure of similarity between a pair of cells based on their gene expression profiles obtained via single-cell RNA sequencing. The underlying idea of the proposed distance is to interpret the gene expression array of a single cell as a discrete probability measure. The distance between two cells is hence computed by solving an Optimal Transport problem between the two corresponding discrete measures. In the Optimal Transport model, we use two types of cost function for measuring the distance between a pair of genes. The first cost function exploits a gene embedding, called gene2vec, which is used to map each gene to a high dimensional vector: the cost of moving a unit of mass of gene expression from a gene to another is set to the Euclidean distance between the corresponding embedded vectors. The second cost function is based on a Pearson distance among pairs of genes. In both cost functions, the more two genes are correlated, the lower is their distance. We exploit the Gene Mover's Distance to solve two classification problems: the classification of cells according to their condition and according to their type. To assess the impact of our new metric, we compare the performances of a $k$-Nearest Neighbor classifier using different distances. The computational results show that the Gene Mover's Distance is competitive with the state-of-the-art distances used in the literature.

q-bio.GN