SearcharxivSearch

arXiv subjects

Elizabeth Louise Baker

Publications and source records attributed to Elizabeth Louise Baker.

4 recordsLinked to original sources

Stochastics of shapes and Kunita flows

Stochastic processes of evolving shapes are used in applications including evolutionary biology, where morphology changes stochastically as a function of evolutionary processes. Due to the non-linear and often infinite-dimensional nature of shape spaces, the mathematical construction of suitable stochastic shape processes is far from immediate. We define and formalize properties that stochastic shape processes should ideally satisfy to be compatible with the shape structure, and we link this to Kunita flows that, when acting on shape spaces, induce stochastic processes that satisfy these criteria by their construction. We couple this with a survey of other relevant shape stochastic processes and show how bridge sampling techniques can be used to condition shape stochastic processes on observed data thereby allowing for statistical inference of parameters of the stochastic dynamics.

math.PR

Scalable physical source-to-field inference with hypernetworks

We present a generative model that amortises computation for the field and potential around e.g.~gravitational or electromagnetic sources. Exact numerical calculation has either computational complexity $\mathcal{O}(M\times{}N)$ in the number of sources $M$ and evaluation points $N$, or requires a fixed evaluation grid to exploit fast Fourier transforms. Using an architecture where a hypernetwork produces an implicit representation of the field or potential around a source collection, our model instead performs as $\mathcal{O}(M + N)$, achieves relative error of $\sim\!4\%-6\%$, and allows evaluation at arbitrary locations for arbitrary numbers of sources, greatly increasing the speed of e.g.~physics simulations. We compare with existing models and develop two-dimensional examples, including cases where sources overlap or have more complex geometries, to demonstrate its application.

cs.LG

Infinite-dimensional Diffusion Bridge Simulation via Operator Learning

The diffusion bridge, which is a diffusion process conditioned on hitting a specific state within a finite period, has found broad applications in various scientific and engineering fields. However, simulating diffusion bridges for modeling natural data can be challenging due to both the intractability of the drift term and continuous representations of the data. Although several methods are available to simulate finite-dimensional diffusion bridges, infinite-dimensional cases remain under explored. This paper presents a method that merges score matching techniques with operator learning, enabling a direct approach to learn the infinite-dimensional bridge and achieving a discretization equivariant bridge simulation. We conduct a series of experiments, ranging from synthetic examples with closed-form solutions to the stochastic nonlinear evolution of real-world biological shape data. Our method demonstrates high efficacy, particularly due to its ability to adapt to any resolution without extra training.

cs.LG

Conditioning non-linear and infinite-dimensional diffusion processes

Generative diffusion models and many stochastic models in science and engineering naturally live in infinite dimensions before discretisation. To incorporate observed data for statistical and learning tasks, one needs to condition on observations. While recent work has treated conditioning linear processes in infinite dimensions, conditioning non-linear processes in infinite dimensions has not been explored. This paper conditions function valued stochastic processes without prior discretisation. To do so, we use an infinite-dimensional version of Girsanov's theorem to condition a function-valued stochastic process, leading to a stochastic differential equation (SDE) for the conditioned process involving the score. We apply this technique to do time series analysis for shapes of organisms in evolutionary biology, where we discretise via the Fourier basis and then learn the coefficients of the score function with score matching methods.

stat.ML